Guide to the Human Genome
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Name: ARMC6 Sequence: fasta or formatted (476aa) NCBI GI: 15529984
Description:

armadillo repeat containing 6

Referenced in:

Additional Interaction Domain Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.4         59           2
 C cysteine            3.4         16           1
 D aspartate           6.5         31           3
 E glutamate           5.9         28           2
 F phenylalanine       2.5         12           1
 G glycine             6.5         31           3
 H histidine           3.4         16           2
 I isoleucine          4.6         22           2
 K lysine              4.6         22           1
 L leucine            11.8         56           3
 M methionine          2.1         10           1
 N asparagine          2.9         14           1
 P proline             2.9         14           1
 Q glutamine           7.1         34           1
 R arginine            5.0         24           1
 S serine              5.3         25           2
 T threonine           4.4         21           1
 V valine              7.6         36           2
 W tryptophan          0.6          3           1
 Y tyrosine            0.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   armadillo repeat containing 6 
ARMC5                 0.016   armadillo repeat containing 5 isoform b 
ARMC5                 0.016   armadillo repeat containing 5 isoform a 
RAP1GDS1              0.015   RAP1, GTP-GDP dissociation stimulator 1 isoform 2 [...
RAP1GDS1              0.013   RAP1, GTP-GDP dissociation stimulator 1 isoform 6 [...
RAP1GDS1              0.013   RAP1, GTP-GDP dissociation stimulator 1 isoform 5 [...
RAP1GDS1              0.013   RAP1, GTP-GDP dissociation stimulator 1 isoform 4 [...
RAP1GDS1              0.013   RAP1, GTP-GDP dissociation stimulator 1 isoform 3 [...
RAP1GDS1              0.013   RAP1, GTP-GDP dissociation stimulator 1 isoform 1 [...
APC2                  0.013   adenomatosis polyposis coli 2 
SPAG6                 0.012   sperm associated antigen 6 isoform 1 
SPAG6                 0.012   sperm associated antigen 6 isoform 2 
ARVCF                 0.011   armadillo repeat protein 
SFRS14                0.010   splicing factor, arginine/serine-rich 14 
SFRS14                0.010   splicing factor, arginine/serine-rich 14 
ZER1                  0.010   zyg-11 homolog B (C. elegans)-like 
CTNND1                0.009   catenin, delta 1 isoform 3A 
CTNND1                0.009   catenin, delta 1 isoform 3A 
CTNND1                0.009   catenin, delta 1 isoform 3A 
CTNND1                0.009   catenin, delta 1 isoform 3AC 
CTNND1                0.009   catenin, delta 1 isoform 3B 
CTNND1                0.009   catenin, delta 1 isoform 3AB 
CTNND1                0.009   catenin, delta 1 isoform 3ABC 
CTNND1                0.009   catenin, delta 1 isoform 1A 
CTNND1                0.009   catenin, delta 1 isoform 1A 
CTNND1                0.009   catenin, delta 1 isoform 1A 
CTNND1                0.009   catenin, delta 1 isoform 1B 
CTNND1                0.009   catenin, delta 1 isoform 1AB 
CTNND1                0.009   catenin, delta 1 isoform 1ABC 
ARMC2                 0.009   armadillo repeat containing 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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