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Search of human proteins with 239745238
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745238 PREDICTED: hypothetical protein XP_002343415 [Homo
sapiens]
(211 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756352 PREDICTED: hypothetical protein XP_002344902 [Homo ... 442 e-124
gi|239750878 PREDICTED: hypothetical protein [Homo sapiens] 442 e-124
gi|239745238 PREDICTED: hypothetical protein XP_002343415 [Homo ... 442 e-124
gi|195963410 MEF2 activating motif and SAP domain containing tra... 41 6e-04
gi|32698970 MEF2 activating motif and SAP domain containing tran... 41 6e-04
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens] 41 6e-04
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens] 41 6e-04
gi|112382216 atrophin-1 like protein isoform a [Homo sapiens] 41 6e-04
gi|239756307 PREDICTED: similar to ubiquitin-associated protein ... 40 0.001
gi|239750857 PREDICTED: similar to ubiquitin-associated protein ... 40 0.001
gi|239745220 PREDICTED: hypothetical protein [Homo sapiens] 40 0.001
gi|8567388 period 3 [Homo sapiens] 39 0.003
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 38 0.007
gi|194272140 dendrin [Homo sapiens] 37 0.012
gi|32880208 diaphanous homolog 3 isoform b [Homo sapiens] 37 0.016
gi|110225351 diaphanous homolog 3 isoform a [Homo sapiens] 37 0.016
gi|186700623 Rab-like GTP-binding protein 1 isoform 1 [Homo sapi... 35 0.036
gi|98986457 host cell factor 1 [Homo sapiens] 35 0.036
gi|188536004 zinc finger protein 469 [Homo sapiens] 35 0.036
gi|52485606 formin-like 2 [Homo sapiens] 35 0.036
gi|32171215 CREB regulated transcription coactivator 2 [Homo sap... 35 0.036
gi|150170670 piccolo isoform 2 [Homo sapiens] 35 0.036
gi|150378539 piccolo isoform 1 [Homo sapiens] 35 0.036
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 35 0.036
gi|167621456 kinase suppressor of ras 2 [Homo sapiens] 35 0.036
gi|29826341 calmodulin binding transcription activator 2 [Homo s... 35 0.036
gi|14790190 spen homolog, transcriptional regulator [Homo sapiens] 35 0.047
gi|21359951 RNA binding motif protein 42 [Homo sapiens] 35 0.047
gi|122937496 WAS/WASL interacting protein family, member 3 [Homo... 35 0.047
gi|148886752 immunoglobulin superfamily, member 9B [Homo sapiens] 35 0.047
>gi|239756352 PREDICTED: hypothetical protein XP_002344902 [Homo
sapiens]
Length = 211
Score = 442 bits (1137), Expect = e-124
Identities = 211/211 (100%), Positives = 211/211 (100%)
Query: 1 MQTWESLLLPPSCSSRRQWLLPDPPFRDSPMTPLGHQSGFSKRVQENGEPFPRAANLPGS 60
MQTWESLLLPPSCSSRRQWLLPDPPFRDSPMTPLGHQSGFSKRVQENGEPFPRAANLPGS
Sbjct: 1 MQTWESLLLPPSCSSRRQWLLPDPPFRDSPMTPLGHQSGFSKRVQENGEPFPRAANLPGS 60
Query: 61 AQAPSPSAPSCPPAITVGYGAQGSHERRSFYLHLLHFRPPGPTLGLAVGWAGGRALESAE 120
AQAPSPSAPSCPPAITVGYGAQGSHERRSFYLHLLHFRPPGPTLGLAVGWAGGRALESAE
Sbjct: 61 AQAPSPSAPSCPPAITVGYGAQGSHERRSFYLHLLHFRPPGPTLGLAVGWAGGRALESAE 120
Query: 121 RTAMFLALASFSVLLVPGTAILMSHAQTPQTGNGGISSSSVPPSPISQVSPASPPPPLPS 180
RTAMFLALASFSVLLVPGTAILMSHAQTPQTGNGGISSSSVPPSPISQVSPASPPPPLPS
Sbjct: 121 RTAMFLALASFSVLLVPGTAILMSHAQTPQTGNGGISSSSVPPSPISQVSPASPPPPLPS 180
Query: 181 SCLPMCSLVPSPLGTGPSLWLLLCNYQKTLW 211
SCLPMCSLVPSPLGTGPSLWLLLCNYQKTLW
Sbjct: 181 SCLPMCSLVPSPLGTGPSLWLLLCNYQKTLW 211
>gi|239750878 PREDICTED: hypothetical protein [Homo sapiens]
Length = 211
Score = 442 bits (1137), Expect = e-124
Identities = 211/211 (100%), Positives = 211/211 (100%)
Query: 1 MQTWESLLLPPSCSSRRQWLLPDPPFRDSPMTPLGHQSGFSKRVQENGEPFPRAANLPGS 60
MQTWESLLLPPSCSSRRQWLLPDPPFRDSPMTPLGHQSGFSKRVQENGEPFPRAANLPGS
Sbjct: 1 MQTWESLLLPPSCSSRRQWLLPDPPFRDSPMTPLGHQSGFSKRVQENGEPFPRAANLPGS 60
Query: 61 AQAPSPSAPSCPPAITVGYGAQGSHERRSFYLHLLHFRPPGPTLGLAVGWAGGRALESAE 120
AQAPSPSAPSCPPAITVGYGAQGSHERRSFYLHLLHFRPPGPTLGLAVGWAGGRALESAE
Sbjct: 61 AQAPSPSAPSCPPAITVGYGAQGSHERRSFYLHLLHFRPPGPTLGLAVGWAGGRALESAE 120
Query: 121 RTAMFLALASFSVLLVPGTAILMSHAQTPQTGNGGISSSSVPPSPISQVSPASPPPPLPS 180
RTAMFLALASFSVLLVPGTAILMSHAQTPQTGNGGISSSSVPPSPISQVSPASPPPPLPS
Sbjct: 121 RTAMFLALASFSVLLVPGTAILMSHAQTPQTGNGGISSSSVPPSPISQVSPASPPPPLPS 180
Query: 181 SCLPMCSLVPSPLGTGPSLWLLLCNYQKTLW 211
SCLPMCSLVPSPLGTGPSLWLLLCNYQKTLW
Sbjct: 181 SCLPMCSLVPSPLGTGPSLWLLLCNYQKTLW 211
>gi|239745238 PREDICTED: hypothetical protein XP_002343415 [Homo
sapiens]
Length = 211
Score = 442 bits (1137), Expect = e-124
Identities = 211/211 (100%), Positives = 211/211 (100%)
Query: 1 MQTWESLLLPPSCSSRRQWLLPDPPFRDSPMTPLGHQSGFSKRVQENGEPFPRAANLPGS 60
MQTWESLLLPPSCSSRRQWLLPDPPFRDSPMTPLGHQSGFSKRVQENGEPFPRAANLPGS
Sbjct: 1 MQTWESLLLPPSCSSRRQWLLPDPPFRDSPMTPLGHQSGFSKRVQENGEPFPRAANLPGS 60
Query: 61 AQAPSPSAPSCPPAITVGYGAQGSHERRSFYLHLLHFRPPGPTLGLAVGWAGGRALESAE 120
AQAPSPSAPSCPPAITVGYGAQGSHERRSFYLHLLHFRPPGPTLGLAVGWAGGRALESAE
Sbjct: 61 AQAPSPSAPSCPPAITVGYGAQGSHERRSFYLHLLHFRPPGPTLGLAVGWAGGRALESAE 120
Query: 121 RTAMFLALASFSVLLVPGTAILMSHAQTPQTGNGGISSSSVPPSPISQVSPASPPPPLPS 180
RTAMFLALASFSVLLVPGTAILMSHAQTPQTGNGGISSSSVPPSPISQVSPASPPPPLPS
Sbjct: 121 RTAMFLALASFSVLLVPGTAILMSHAQTPQTGNGGISSSSVPPSPISQVSPASPPPPLPS 180
Query: 181 SCLPMCSLVPSPLGTGPSLWLLLCNYQKTLW 211
SCLPMCSLVPSPLGTGPSLWLLLCNYQKTLW
Sbjct: 181 SCLPMCSLVPSPLGTGPSLWLLLCNYQKTLW 211
>gi|195963410 MEF2 activating motif and SAP domain containing
transcriptional regulator isoform 1 [Homo sapiens]
Length = 415
Score = 41.2 bits (95), Expect = 6e-04
Identities = 52/195 (26%), Positives = 71/195 (36%), Gaps = 48/195 (24%)
Query: 22 PDPPFRDSPMTPLGHQSGFSKRVQENGEPFPRAANLPGSAQAPSPS-APSCPPAITVGYG 80
P P + + Q + P PRAA+ PG+A AP+P+ AP+ PA+T G
Sbjct: 224 PWPRLKPKALAAARRQGSVKPSAASHRPPLPRAADTPGTAPAPTPTPAPAAAPALTPSSG 283
Query: 81 AQGSHERRSFYLHLLHFRPPGPTLGLAVGWAGGRALESAERTAMFLALASFSVLL----- 135
P L L L+ A R A L +L
Sbjct: 284 ------------------PGSAALTLE------EELQEAIRRAQLLPNRGIDDILEDQVE 319
Query: 136 -----------VPGTAILMSHAQTPQTGNGGISS--SSVPPSPISQVSPASPPPPLPSSC 182
PG+ ++S P + G+SS SS PSP + SP+ P
Sbjct: 320 PDDPLPPIPLDFPGSFDVLS----PSPDSEGLSSVFSSSLPSPTNSSSPSPRDPTDSLDW 375
Query: 183 LPMCSLVPSPLGTGP 197
L S P PLG+GP
Sbjct: 376 LEALSGGP-PLGSGP 389
>gi|32698970 MEF2 activating motif and SAP domain containing
transcriptional regulator isoform 2 [Homo sapiens]
Length = 312
Score = 41.2 bits (95), Expect = 6e-04
Identities = 52/195 (26%), Positives = 71/195 (36%), Gaps = 48/195 (24%)
Query: 22 PDPPFRDSPMTPLGHQSGFSKRVQENGEPFPRAANLPGSAQAPSPS-APSCPPAITVGYG 80
P P + + Q + P PRAA+ PG+A AP+P+ AP+ PA+T G
Sbjct: 121 PWPRLKPKALAAARRQGSVKPSAASHRPPLPRAADTPGTAPAPTPTPAPAAAPALTPSSG 180
Query: 81 AQGSHERRSFYLHLLHFRPPGPTLGLAVGWAGGRALESAERTAMFLALASFSVLL----- 135
P L L L+ A R A L +L
Sbjct: 181 ------------------PGSAALTLE------EELQEAIRRAQLLPNRGIDDILEDQVE 216
Query: 136 -----------VPGTAILMSHAQTPQTGNGGISS--SSVPPSPISQVSPASPPPPLPSSC 182
PG+ ++S P + G+SS SS PSP + SP+ P
Sbjct: 217 PDDPLPPIPLDFPGSFDVLS----PSPDSEGLSSVFSSSLPSPTNSSSPSPRDPTDSLDW 272
Query: 183 LPMCSLVPSPLGTGP 197
L S P PLG+GP
Sbjct: 273 LEALSGGP-PLGSGP 286
>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
Length = 1012
Score = 41.2 bits (95), Expect = 6e-04
Identities = 51/193 (26%), Positives = 68/193 (35%), Gaps = 38/193 (19%)
Query: 14 SSRRQWLLPDPPFRDSP--MTPLGHQSGFSKRVQENGEPFPRAANLPG-----SAQAPS- 65
S+++Q L PP +P +TP + P P A +P ++QAP+
Sbjct: 174 SAQQQMLQAQPPALQAPTGVTPAPSSAPPGTPQLPTPGPTPSATAVPPQGSPTASQAPNQ 233
Query: 66 PSAPSCPPAITVGYGAQGSHERRSFYLHLLHFRPPGPTLGLAVGWAGGRALESAERTAMF 125
P AP+ P T A H +R H P P L G AG + S
Sbjct: 234 PQAPTAPVPHTHIQQAPALHPQRPPSPHPPPHPSPHPPLQPLTGSAGQPSAPS------- 286
Query: 126 LALASFSVLLVPGTAILMSHAQTPQTGNGGISSSSVPPSPISQVSPASPPPPLPSSCLPM 185
HAQ P G G S+ P+ Q P PP P P
Sbjct: 287 -------------------HAQPPLHGQGPPGPHSLQAGPLLQ----HPGPPQPFGLPPQ 323
Query: 186 CSLVPSPLGTGPS 198
S +PLGT P+
Sbjct: 324 ASQGQAPLGTSPA 336
>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 41.2 bits (95), Expect = 6e-04
Identities = 51/193 (26%), Positives = 68/193 (35%), Gaps = 38/193 (19%)
Query: 14 SSRRQWLLPDPPFRDSP--MTPLGHQSGFSKRVQENGEPFPRAANLPG-----SAQAPS- 65
S+++Q L PP +P +TP + P P A +P ++QAP+
Sbjct: 728 SAQQQMLQAQPPALQAPTGVTPAPSSAPPGTPQLPTPGPTPSATAVPPQGSPTASQAPNQ 787
Query: 66 PSAPSCPPAITVGYGAQGSHERRSFYLHLLHFRPPGPTLGLAVGWAGGRALESAERTAMF 125
P AP+ P T A H +R H P P L G AG + S
Sbjct: 788 PQAPTAPVPHTHIQQAPALHPQRPPSPHPPPHPSPHPPLQPLTGSAGQPSAPS------- 840
Query: 126 LALASFSVLLVPGTAILMSHAQTPQTGNGGISSSSVPPSPISQVSPASPPPPLPSSCLPM 185
HAQ P G G S+ P+ Q P PP P P
Sbjct: 841 -------------------HAQPPLHGQGPPGPHSLQAGPLLQ----HPGPPQPFGLPPQ 877
Query: 186 CSLVPSPLGTGPS 198
S +PLGT P+
Sbjct: 878 ASQGQAPLGTSPA 890
>gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 41.2 bits (95), Expect = 6e-04
Identities = 51/193 (26%), Positives = 68/193 (35%), Gaps = 38/193 (19%)
Query: 14 SSRRQWLLPDPPFRDSP--MTPLGHQSGFSKRVQENGEPFPRAANLPG-----SAQAPS- 65
S+++Q L PP +P +TP + P P A +P ++QAP+
Sbjct: 728 SAQQQMLQAQPPALQAPTGVTPAPSSAPPGTPQLPTPGPTPSATAVPPQGSPTASQAPNQ 787
Query: 66 PSAPSCPPAITVGYGAQGSHERRSFYLHLLHFRPPGPTLGLAVGWAGGRALESAERTAMF 125
P AP+ P T A H +R H P P L G AG + S
Sbjct: 788 PQAPTAPVPHTHIQQAPALHPQRPPSPHPPPHPSPHPPLQPLTGSAGQPSAPS------- 840
Query: 126 LALASFSVLLVPGTAILMSHAQTPQTGNGGISSSSVPPSPISQVSPASPPPPLPSSCLPM 185
HAQ P G G S+ P+ Q P PP P P
Sbjct: 841 -------------------HAQPPLHGQGPPGPHSLQAGPLLQ----HPGPPQPFGLPPQ 877
Query: 186 CSLVPSPLGTGPS 198
S +PLGT P+
Sbjct: 878 ASQGQAPLGTSPA 890
>gi|239756307 PREDICTED: similar to ubiquitin-associated protein 1
(predicted) [Homo sapiens]
Length = 290
Score = 40.0 bits (92), Expect = 0.001
Identities = 51/209 (24%), Positives = 82/209 (39%), Gaps = 39/209 (18%)
Query: 10 PPSCSSRRQWLL---PDPPFRDSPMTPLGHQSGFSKRVQENGEPFPRAANLPGSAQAPSP 66
P + S+ WLL P+ +P T ++G +R +E GE A++ GS + P+P
Sbjct: 68 PGTASAPPAWLLLVSPEHGLAPAPTTIRDPEAGHQERPEEEGEDEAEASS--GSEEEPAP 125
Query: 67 SAPSCPPAITVGYGAQGSHERRSFYLHLLHFRPPGPTLGLAVGWAGGRALESAERTAMFL 126
S+ + G A RR L +L G+ + AG R S +
Sbjct: 126 SS------LQPGSPASPGPGRRLCSLDVLR--------GVRLELAGARRRLSEGK----- 166
Query: 127 ALASFSVLLVPGTAILMSHAQTPQTGNGGISSSSVPPSPISQVSPASPPPPLPSSCLP-- 184
L S L+ G + + P S+S P+P +PASPP P + +P
Sbjct: 167 -LVSRPRALLHGLRGHRALSLCPSPAQSPRSASPPGPAPQHPAAPASPPRPSTAGAIPPL 225
Query: 185 -------MCSLVPSP-----LGTGPSLWL 201
++P+P GP +W+
Sbjct: 226 RSHKPTVAVRILPAPPRPPISSPGPIIWV 254
>gi|239750857 PREDICTED: similar to ubiquitin-associated protein 1
(predicted) [Homo sapiens]
Length = 290
Score = 40.0 bits (92), Expect = 0.001
Identities = 51/209 (24%), Positives = 82/209 (39%), Gaps = 39/209 (18%)
Query: 10 PPSCSSRRQWLL---PDPPFRDSPMTPLGHQSGFSKRVQENGEPFPRAANLPGSAQAPSP 66
P + S+ WLL P+ +P T ++G +R +E GE A++ GS + P+P
Sbjct: 68 PGTASAPPAWLLLVSPEHGLAPAPTTIRDPEAGHQERPEEEGEDEAEASS--GSEEEPAP 125
Query: 67 SAPSCPPAITVGYGAQGSHERRSFYLHLLHFRPPGPTLGLAVGWAGGRALESAERTAMFL 126
S+ + G A RR L +L G+ + AG R S +
Sbjct: 126 SS------LQPGSPASPGPGRRLCSLDVLR--------GVRLELAGARRRLSEGK----- 166
Query: 127 ALASFSVLLVPGTAILMSHAQTPQTGNGGISSSSVPPSPISQVSPASPPPPLPSSCLP-- 184
L S L+ G + + P S+S P+P +PASPP P + +P
Sbjct: 167 -LVSRPRALLHGLRGHRALSLCPSPAQSPRSASPPGPAPQHPAAPASPPRPSTAGAIPPL 225
Query: 185 -------MCSLVPSP-----LGTGPSLWL 201
++P+P GP +W+
Sbjct: 226 RSHKPTVAVRILPAPPRPPISSPGPIIWV 254
>gi|239745220 PREDICTED: hypothetical protein [Homo sapiens]
Length = 290
Score = 40.0 bits (92), Expect = 0.001
Identities = 51/209 (24%), Positives = 82/209 (39%), Gaps = 39/209 (18%)
Query: 10 PPSCSSRRQWLL---PDPPFRDSPMTPLGHQSGFSKRVQENGEPFPRAANLPGSAQAPSP 66
P + S+ WLL P+ +P T ++G +R +E GE A++ GS + P+P
Sbjct: 68 PGTASAPPAWLLLVSPEHGLAPAPTTIRDPEAGHQERPEEEGEDEAEASS--GSEEEPAP 125
Query: 67 SAPSCPPAITVGYGAQGSHERRSFYLHLLHFRPPGPTLGLAVGWAGGRALESAERTAMFL 126
S+ + G A RR L +L G+ + AG R S +
Sbjct: 126 SS------LQPGSPASPGPGRRLCSLDVLR--------GVRLELAGARRRLSEGK----- 166
Query: 127 ALASFSVLLVPGTAILMSHAQTPQTGNGGISSSSVPPSPISQVSPASPPPPLPSSCLP-- 184
L S L+ G + + P S+S P+P +PASPP P + +P
Sbjct: 167 -LVSRPRALLHGLRGHRALSLCPSPAQSPRSASPPGPAPQHPAAPASPPRPSTAGAIPPL 225
Query: 185 -------MCSLVPSP-----LGTGPSLWL 201
++P+P GP +W+
Sbjct: 226 RSHKPTVAVRILPAPPRPPISSPGPIIWV 254
>gi|8567388 period 3 [Homo sapiens]
Length = 1201
Score = 38.9 bits (89), Expect = 0.003
Identities = 49/170 (28%), Positives = 73/170 (42%), Gaps = 23/170 (13%)
Query: 21 LPDPPFRDSPMTPLGHQSGFSKRVQENGEPFPRAANLPGSAQAPSPSAPSCPPAITVGYG 80
LP+PP S T G + G +N +P P +A +P S+P+ PPA V
Sbjct: 744 LPEPPDSSSSNTGSGPRRG----AHQNAQPC-----CPSAASSPHTSSPTFPPAAMVP-- 792
Query: 81 AQGSHERRSFYLHLLHFRPPGPTLGLAVGWA--GGRALESAERTAMFLA-----LASFSV 133
+Q + +F L PG A G A G L +E + A L +F
Sbjct: 793 SQAPYLVPAFPLPAA--TSPGREYA-APGTAPEGLHGLPLSEGLQPYPAFPFPYLDTFMT 849
Query: 134 LLVPGTAI--LMSHAQTPQTGNGGISSSSVPPSPISQVSPASPPPPLPSS 181
+ +P + L+S + P G +SS++ PS S +SP PPP +S
Sbjct: 850 VFLPDPPVCPLLSPSFLPCPFLGATASSAISPSMSSAMSPTLDPPPSVTS 899
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 37.7 bits (86), Expect = 0.007
Identities = 43/174 (24%), Positives = 67/174 (38%), Gaps = 42/174 (24%)
Query: 9 LPPSCSSRRQWLLPDPPFRDSPMTPLGHQSGFSKRVQENGEPFPRAANLPGSAQAPSPSA 68
LPP +S ++ P R G + K+ + GEP + LP + SP++
Sbjct: 1087 LPPRAASAAMYV----PARSGR----GRKGPLVKQTKVEGEP-QKGGGLPPAPSPTSPAS 1137
Query: 69 PSCPPAITVGYGAQGSHERRSFYLHLLHFRPPGPTLGLAVGWAGGRALESAERTAMFLAL 128
P PPA+ E+ S + + + P + + GR+ + + A
Sbjct: 1138 PQPPPAVAA------PSEKNSIPIPTIIIKAPSTS-------SSGRSSQGSSTEAE---- 1180
Query: 129 ASFSVLLVPGTAILMSHAQTPQTGNGGISSSSVPPSP-ISQVSPASPPPPLPSS 181
P T Q TG GG SS P+P +S V P+ P P P+S
Sbjct: 1181 --------PPT-------QPEPTGGGGGGGSSPSPAPAMSPVPPSPSPVPTPAS 1219
Score = 33.1 bits (74), Expect = 0.18
Identities = 41/123 (33%), Positives = 51/123 (41%), Gaps = 43/123 (34%)
Query: 81 AQGSHERRSFYLHLLHFRPPGPTLGLAVGWAGGRALESAERTAMFLALASFSV---LLVP 137
AQ S+ER SF PPGP L L +++ +AE +LA + L VP
Sbjct: 868 AQPSYERPSFL-------PPGPGLMLRQ-----KSIGAAEDDRPYLAPPAMKFSRSLSVP 915
Query: 138 GTAILMSHAQTPQTGNGGISSSSVPPSPISQVSPASPP---PPLPSSCLPMCSLVPSPLG 194
G S +PP P + SP PP PP+PSS L PSP G
Sbjct: 916 G-------------------SEDIPPPPTT--SPPEPPYSTPPVPSS---SGRLTPSPRG 951
Query: 195 TGP 197
GP
Sbjct: 952 -GP 953
Score = 29.3 bits (64), Expect = 2.6
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 16/87 (18%)
Query: 100 PGPTLGLAVGWAGGRALESAERTAMFLALASFSVLLVP--------GTAILMSHAQ-TPQ 150
P P+ + G GG + A R A+ + + VP G + + + PQ
Sbjct: 1062 PSPSHHGSAGGGGGSSQGPALRYFQLPPRAASAAMYVPARSGRGRKGPLVKQTKVEGEPQ 1121
Query: 151 TGNGGISSSSVPPSPISQVSPASPPPP 177
G G +PP+P S SPASP PP
Sbjct: 1122 KGGG------LPPAP-SPTSPASPQPP 1141
>gi|194272140 dendrin [Homo sapiens]
Length = 711
Score = 37.0 bits (84), Expect = 0.012
Identities = 42/167 (25%), Positives = 65/167 (38%), Gaps = 30/167 (17%)
Query: 16 RRQWLLPDP----PFRDSPMTPLGHQSGFSKRVQENGEPFPRAANLPGSAQAPSPSAPSC 71
RR+W P P P + P LG + G PG++Q P+ SAP+
Sbjct: 218 RRRWDRPPPYVAPPSYEGPHRTLGTKRG------------------PGNSQVPTSSAPAA 259
Query: 72 PPAITVGYGAQGSHERRSF--YLHLLHFRPPGPTLGLAVGWAGGRALESAERTAMFLALA 129
PA T G + + R + L R LG + G RA + + +L
Sbjct: 260 TPARTDGGRTKKRLDPRIYRDVLGAWGLRQGQGLLGGSPGCGAARARPEPGKGVVEKSLG 319
Query: 130 SFSVLLVPGTAILMSHAQTPQTGNGGISSSSVPPSPISQVSPASPPP 176
+ L G+ SH Q TG+ G + + P+ + +P +P P
Sbjct: 320 LAAADLNSGSD---SHPQAKATGSAG---TEIAPAGSATAAPCAPHP 360
>gi|32880208 diaphanous homolog 3 isoform b [Homo sapiens]
Length = 849
Score = 36.6 bits (83), Expect = 0.016
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 7/51 (13%)
Query: 149 PQTGNGGISSSSVPPSP-------ISQVSPASPPPPLPSSCLPMCSLVPSP 192
P + GG S++PP P + P PPPPLP +P VP P
Sbjct: 300 PPSKEGGTGHSALPPPPPLPSGGGVPPPPPPPPPPPLPGMRMPFSGPVPPP 350
>gi|110225351 diaphanous homolog 3 isoform a [Homo sapiens]
Length = 1193
Score = 36.6 bits (83), Expect = 0.016
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 7/51 (13%)
Query: 149 PQTGNGGISSSSVPPSP-------ISQVSPASPPPPLPSSCLPMCSLVPSP 192
P + GG S++PP P + P PPPPLP +P VP P
Sbjct: 563 PPSKEGGTGHSALPPPPPLPSGGGVPPPPPPPPPPPLPGMRMPFSGPVPPP 613
>gi|186700623 Rab-like GTP-binding protein 1 isoform 1 [Homo
sapiens]
Length = 729
Score = 35.4 bits (80), Expect = 0.036
Identities = 32/108 (29%), Positives = 46/108 (42%), Gaps = 11/108 (10%)
Query: 91 YLHLLHFRPPGPTLGLAVGWAGGRALESAERTAMFLALASFSVLLVPGTAILMSHAQTPQ 150
+L ++ R G LA A G++ ++ + A A + PGT PQ
Sbjct: 271 FLEMMEARSRGHASPLA---ANGQSPSPGSQSPVVPAGAVSTGSSSPGTP-----QPAPQ 322
Query: 151 TGNGGISSSSVPPSPISQVSPASPPPPLPSSCLPMCSLVPSPLGTGPS 198
SSVPP P S+ A PPP PS+ P S++ GT P+
Sbjct: 323 LPLNAAPPSSVPPVPPSE---ALPPPACPSAPAPRRSIISRLFGTSPA 367
>gi|98986457 host cell factor 1 [Homo sapiens]
Length = 2035
Score = 35.4 bits (80), Expect = 0.036
Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 9/104 (8%)
Query: 103 TLGLAVGWAGGRALESAERTAMFL--ALASFSVLLVPGTAILMSHAQTPQTGNGGISSSS 160
T+ ++ AGG + ++ T + +A+ S ++ TAI +S AQT T GG+++ +
Sbjct: 889 TVSTSLAGAGGHSTSASLATPITTLGTIATLSSQVINPTAITVSAAQTTLTAAGGLTTPT 948
Query: 161 VPPSPISQ------VSPASPPPPLPSSCLPMCSLVPSPLGTGPS 198
+ P+SQ ++ S P LP+ S++ SP P+
Sbjct: 949 ITMQPVSQPTQVTLITAPSGVEAQPVHDLPV-SILASPTTEQPT 991
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 35.4 bits (80), Expect = 0.036
Identities = 55/202 (27%), Positives = 79/202 (39%), Gaps = 30/202 (14%)
Query: 10 PPSCSSRRQWLLPDPPFRDSPMTPLGHQSGFSKRVQENGEPFP-RAANLPGSAQAPSPSA 68
PP + W DP P TP G ++ + NG+P P + LP SA P P
Sbjct: 432 PPPARLPQLW---DPTAAPYP-TPPGGPLAATRSMFFNGQPSPGQRLCLPQSAPLPWPQV 487
Query: 69 PSCPPAITVGYGAQGSHERRSFYLHLLHFRPPGP--------TLGLAVGWAGGRALESAE 120
P A +G + L L F GP LG A G R A
Sbjct: 488 --LPTARPSPHGME--------MLSRLPFPAGGPEWQGGSQGALGTAGKTPGPREKLPAV 537
Query: 121 RTAM--FLALASFSVLLVPGTAILMSHAQTPQTGNGGISSSSVPPSPISQVSPASPPPPL 178
R++ AL +++ + PG L PQ G + S+PP + SP+ P P
Sbjct: 538 RSSQGGSPALFTYNGMTDPGAQPLFFGVAQPQVSPHG--TPSLPPPRVVGASPSESPLPS 595
Query: 179 P--SSCLPMCSLVPSPLGTGPS 198
P ++ CS + SP+ + P+
Sbjct: 596 PATNTAGSTCSSL-SPMSSSPA 616
>gi|52485606 formin-like 2 [Homo sapiens]
Length = 1092
Score = 35.4 bits (80), Expect = 0.036
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 129 ASFSVLLVPGTAILMSHAQTPQTGNGGISSSSVPPSPISQVSPASPPPPLPSSCL--PMC 186
A+ S L P L + TP+T G + +PP P P PPPP P L P
Sbjct: 520 AASSGPLPPPPPPLPPSSDTPETVQNGPVTPPMPPPPPPPPPPPPPPPPPPPPPLPGPAA 579
Query: 187 SLVPSP 192
VP+P
Sbjct: 580 ETVPAP 585
>gi|32171215 CREB regulated transcription coactivator 2 [Homo
sapiens]
Length = 693
Score = 35.4 bits (80), Expect = 0.036
Identities = 44/158 (27%), Positives = 61/158 (38%), Gaps = 17/158 (10%)
Query: 52 PRAANLPGSAQAPSPSAPSCPPAITVGYGAQGSHERRSFYLHLLHFRPPGPT-----LGL 106
PR+ +PG PSP P+ P + GS L LHF PP PT
Sbjct: 242 PRSCEVPGINIFPSPDQPANVPVLPPAMNTGGSLPD----LTNLHFPPPLPTPLDPEETA 297
Query: 107 AVGWAGGRALESAERTAMFLALASFSVL----LVPGTAILMSHAQTPQT-GNGGISSSSV 161
+GG + + T L ++ L PG +SH + N + +S
Sbjct: 298 YPSLSGGNSTSNLTHTMTHLGISRGMGLGPGYDAPGLHSPLSHPSLQSSLSNPNLQASLS 357
Query: 162 PPSPISQVSPASPPPPLPSSCLPMCSLVPSPLGTGPSL 199
P P Q+ + P LP+S L L + LG PSL
Sbjct: 358 SPQP--QLQGSHSHPSLPASSLARHVLPTTSLG-HPSL 392
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 35.4 bits (80), Expect = 0.036
Identities = 49/196 (25%), Positives = 64/196 (32%), Gaps = 33/196 (16%)
Query: 30 PMTPLGHQSGFSKRVQENGEPFPRAANLPGSAQAPS-PSAPSCPPAITVGYGAQGSHERR 88
P P SG +K + + PG+ + P+ P P+ PPA G S +
Sbjct: 328 PAKPPAQPSGLTKPLAQQPGTVKPPVQPPGTTKPPAQPLGPAKPPAQQTGSEKPSSEQPG 387
Query: 89 SFYLHLLHFRPPGPTLGLAVGWAGGRALESAERTAMFLALASFSVLLVPGTAILMSHAQT 148
L +PPG +G G A ++ LA L P A +
Sbjct: 388 PKALA----QPPG--VGKTPAQQPGPAKPPTQQVGTPKPLAQQPGLQSPAKAPGPTKTPV 441
Query: 149 PQTGNGGISSSSV--------------PPS--------PISQVSPASPPPPLPSSCLPMC 186
Q G G I + PPS P Q PA PPP P S P
Sbjct: 442 QQPGPGKIPAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPGPAKPPPQQPGSAKPPS 501
Query: 187 ----SLVPSPLGTGPS 198
S P P GP+
Sbjct: 502 QQPGSTKPPPQQPGPA 517
Score = 29.6 bits (65), Expect = 2.0
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 162 PPSPISQVSPASPPPPLPSSCLPMCSLVP 190
PP P P PPPPLP P +++P
Sbjct: 2411 PPPPPPPPPPPPPPPPLPPPTSPKPTILP 2439
Score = 28.1 bits (61), Expect = 5.7
Identities = 15/38 (39%), Positives = 17/38 (44%)
Query: 156 ISSSSVPPSPISQVSPASPPPPLPSSCLPMCSLVPSPL 193
IS+ PP P P PPPP P P S P+ L
Sbjct: 2401 ISAQPPPPPPPPPPPPPPPPPPPPPPLPPPTSPKPTIL 2438
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 35.4 bits (80), Expect = 0.036
Identities = 49/196 (25%), Positives = 64/196 (32%), Gaps = 33/196 (16%)
Query: 30 PMTPLGHQSGFSKRVQENGEPFPRAANLPGSAQAPS-PSAPSCPPAITVGYGAQGSHERR 88
P P SG +K + + PG+ + P+ P P+ PPA G S +
Sbjct: 328 PAKPPAQPSGLTKPLAQQPGTVKPPVQPPGTTKPPAQPLGPAKPPAQQTGSEKPSSEQPG 387
Query: 89 SFYLHLLHFRPPGPTLGLAVGWAGGRALESAERTAMFLALASFSVLLVPGTAILMSHAQT 148
L +PPG +G G A ++ LA L P A +
Sbjct: 388 PKALA----QPPG--VGKTPAQQPGPAKPPTQQVGTPKPLAQQPGLQSPAKAPGPTKTPV 441
Query: 149 PQTGNGGISSSSV--------------PPS--------PISQVSPASPPPPLPSSCLPMC 186
Q G G I + PPS P Q PA PPP P S P
Sbjct: 442 QQPGPGKIPAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPGPAKPPPQQPGSAKPPS 501
Query: 187 ----SLVPSPLGTGPS 198
S P P GP+
Sbjct: 502 QQPGSTKPPPQQPGPA 517
Score = 29.6 bits (65), Expect = 2.0
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 162 PPSPISQVSPASPPPPLPSSCLPMCSLVP 190
PP P P PPPPLP P +++P
Sbjct: 2411 PPPPPPPPPPPPPPPPLPPPTSPKPTILP 2439
Score = 28.1 bits (61), Expect = 5.7
Identities = 15/38 (39%), Positives = 17/38 (44%)
Query: 156 ISSSSVPPSPISQVSPASPPPPLPSSCLPMCSLVPSPL 193
IS+ PP P P PPPP P P S P+ L
Sbjct: 2401 ISAQPPPPPPPPPPPPPPPPPPPPPPLPPPTSPKPTIL 2438
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 35.4 bits (80), Expect = 0.036
Identities = 57/208 (27%), Positives = 80/208 (38%), Gaps = 35/208 (16%)
Query: 17 RQWLLPDPPFRDSPMTPLGHQSGFSKRVQENGEPFPRAANLP----GSAQAPSPSAPSCP 72
R L P PP +P P SG + N P LP G+A+AP P+
Sbjct: 1318 RDGLTPVPPLAPAPRPP---SSGLPAVL--NPRPTLTPGRLPTPTLGTARAPMPTPTLVR 1372
Query: 73 PAIT--------VGYGAQGSHERR-SFYLHLLHFRPPGPTLGLAVGWAGGRALESAERTA 123
P + V A G+ S LH+ P + + + L S +
Sbjct: 1373 PLLKLVHSPSPEVSASAPGAAPLTISSPLHVPSSLPGPASSPMPI--PNSSPLASPVSST 1430
Query: 124 MFLALASFSVLLVPGTAILMSHAQTPQT----------GNGGISSSSVPPSPISQVSPAS 173
+ + L+S + VP T L + A P T +G +SV P P++ V PA+
Sbjct: 1431 VSVPLSSSLPISVPTT--LPAPASAPLTIPISAPLTVSASGPALLTSVTP-PLAPVVPAA 1487
Query: 174 PPPP--LPSSCLPMCSLVPSPLGTGPSL 199
P PP PS P S + L T PSL
Sbjct: 1488 PGPPSLAPSGASPSASALTLGLATAPSL 1515
Score = 32.7 bits (73), Expect = 0.23
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 10/66 (15%)
Query: 137 PGTAILMSHAQTP-------QTGNGGISSSSVPPSPISQVSPASPPPPLPSSCLPMCSLV 189
PG A +++ +QTP T ++S+S P+P ++P+S LP+ P+ S +
Sbjct: 1616 PGAAPVLASSQTPVPVMAPSSTPGTSLASASPVPAPTPVLAPSSTQTMLPA---PVPSPL 1672
Query: 190 PSPLGT 195
PSP T
Sbjct: 1673 PSPAST 1678
Score = 30.0 bits (66), Expect = 1.5
Identities = 42/159 (26%), Positives = 57/159 (35%), Gaps = 7/159 (4%)
Query: 50 PFPRAANLPGSAQAPSP-SAPSCPPAITVGYGAQGSHERRSFYLHLLHFRPPGPTLGLAV 108
P P AA + S+Q P P APS P ++ + P P
Sbjct: 1614 PSPGAAPVLASSQTPVPVMAPSSTPGTSLASASPVPAPTPVLAPSSTQTMLPAPVPSPLP 1673
Query: 109 GWAGGRALESAERTAMFLALASFSVLLVPGTAILMSHAQTPQTGNGGISSSSVPPSPISQ 168
A + L A A L +S S L GT P +SS+ P+P
Sbjct: 1674 SPASTQTLALAPALAPTLGGSSPSQTLSLGTG--NPQGPFPTQTLSLTPASSLVPTPAQT 1731
Query: 169 VSPASPPPPLPSSCLPMCSLVP----SPLGTGPSLWLLL 203
+S A PP P+ L + P SP+G P+ L L
Sbjct: 1732 LSLAPGPPLGPTQTLSLAPAPPLAPASPVGPAPAHTLTL 1770
Score = 27.7 bits (60), Expect = 7.4
Identities = 45/174 (25%), Positives = 66/174 (37%), Gaps = 12/174 (6%)
Query: 21 LPDPPFRDSPMTPLGHQSGFSKRVQENGEPFPRAANLPGSAQAPSPSAPSCPPAITVGYG 80
LP P SPM P+ + S + V P +++LP S P+ S P I +
Sbjct: 1407 LPGPA--SSPM-PIPNSSPLASPVSSTVS-VPLSSSLPISVPTTLPAPASAPLTIPISAP 1462
Query: 81 AQGSHERRSFYLHLLHFRPP-GPTLGLAVG---WAGGRALESAERTAMFLALA-SFSVLL 135
S + L PP P + A G A A SA + LA A S S
Sbjct: 1463 LTVSASGPAL---LTSVTPPLAPVVPAAPGPPSLAPSGASPSASALTLGLATAPSLSSSQ 1519
Query: 136 VPGTAILMSHAQTPQTGNGGISSSSVPPSPISQVSPASPPPPLPSSCLPMCSLV 189
PG +L++ + G + + P + + ASP P P+ SL+
Sbjct: 1520 TPGHPLLLAPTSSHVPGLNSTVAPACSPVLVPASALASPFPSAPNPAPAQASLL 1573
>gi|167621456 kinase suppressor of ras 2 [Homo sapiens]
Length = 921
Score = 35.4 bits (80), Expect = 0.036
Identities = 17/34 (50%), Positives = 20/34 (58%)
Query: 159 SSVPPSPISQVSPASPPPPLPSSCLPMCSLVPSP 192
SS PS + +P+SP PPLP S P L PSP
Sbjct: 488 SSSNPSSTTSSTPSSPAPPLPPSATPPSPLHPSP 521
>gi|29826341 calmodulin binding transcription activator 2 [Homo
sapiens]
Length = 1202
Score = 35.4 bits (80), Expect = 0.036
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
Query: 146 AQTPQTGNGGISSSSV-------PPSPISQVSPASPPP-PLPSSCLPMCSLVPSPLGTG- 196
+ +P TG +SS S S S SPPP PLP+S + M + P L +G
Sbjct: 829 SSSPDTGLSSVSSPSELSDGTFSVTSAYSSAPDGSPPPAPLPASEMTMEDMAPGQLSSGV 888
Query: 197 PSLWLLLCNYQKT 209
P LLL +Y+ T
Sbjct: 889 PEAPLLLMDYEAT 901
>gi|14790190 spen homolog, transcriptional regulator [Homo sapiens]
Length = 3664
Score = 35.0 bits (79), Expect = 0.047
Identities = 40/155 (25%), Positives = 55/155 (35%), Gaps = 12/155 (7%)
Query: 49 EPFPRAANLPGSAQAPSPSAPSCPPAITVGYGAQGSH-ERR------SFYLHLLHFRPPG 101
+P AA P + AP+P+ P + + A H E R S L L PP
Sbjct: 3228 QPGKEAAKTPDAKAAPTPTPAPVPVPVPLPAPAPAPHGEARILTVTPSNQLQGLPLTPPV 3287
Query: 102 P-TLGLAVGWAGGRALESAE----RTAMFLALASFSVLLVPGTAILMSHAQTPQTGNGGI 156
T G+ + + G + RT A + + + L S +T G
Sbjct: 3288 VVTHGVQIVHSSGELFQEYRYGDIRTYHPPAQLTHTQFPAASSVGLPSRTKTAAQGPPPE 3347
Query: 157 SSSSVPPSPISQVSPASPPPPLPSSCLPMCSLVPS 191
PP P+ PA P PP P S L PS
Sbjct: 3348 GEPLQPPQPVQSTQPAQPAPPCPPSQLGQPGQPPS 3382
>gi|21359951 RNA binding motif protein 42 [Homo sapiens]
Length = 480
Score = 35.0 bits (79), Expect = 0.047
Identities = 43/157 (27%), Positives = 59/157 (37%), Gaps = 20/157 (12%)
Query: 52 PRAANLPGSAQAPSPSAPSCPPAITVGYGAQGSHERRSFYLHLLHFRPP---GPTLGLAV 108
P +P P+AP P I Q + PP GP V
Sbjct: 64 PTVPTVPTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAATVVPPMVGGPPFVGPV 123
Query: 109 GWAGGRA--LESAE-RTAMFLALASFSVLLVPGTAILMSHAQTP---QTGNGGISSSSVP 162
G+ G L+S E R AMFL A+ + P A ++ A P Q + +SS++
Sbjct: 124 GFGPGDRSHLDSPEAREAMFLRRAA----VAPQRAPILRPAFVPHVLQRADSALSSAAAG 179
Query: 163 PSPISQ-------VSPASPPPPLPSSCLPMCSLVPSP 192
P P++ V P P PP P LP + P P
Sbjct: 180 PRPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGP 216
>gi|122937496 WAS/WASL interacting protein family, member 3 [Homo
sapiens]
Length = 483
Score = 35.0 bits (79), Expect = 0.047
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 149 PQTGNGGISSSSVPPSPISQVSPASPPPPLP--SSCLPMCSLVPSPL 193
P G G+ + P+ +Q PA PPPPLP +SC P SL PL
Sbjct: 268 PPCGYPGLKAEPASPAQDAQEPPA-PPPPLPPYASCSPRASLPAPPL 313
Score = 33.1 bits (74), Expect = 0.18
Identities = 53/184 (28%), Positives = 71/184 (38%), Gaps = 16/184 (8%)
Query: 21 LPDPPFRDSPM-TPLGHQSG--FSKRVQENGEPFPRAANLPGSAQAPSPSAPSCPPAITV 77
LP P SP+ TPL G + P P A P P P+ P PPA +
Sbjct: 186 LPPPLPSSSPIKTPLVSPPGPLTKGNLPVVAPPVPCAP--PPPPPPPPPTPPPLPPASVL 243
Query: 78 GYGAQGSHERRSFYLHLLHFRPPGPTLGLAVGWAGGRALESAERTAMFLALASFSVLLVP 137
A + + LHL PP P L G+ G +A ++ A L P
Sbjct: 244 SDKAV---KPQLAPLHLPPIPPPLPLLP-PCGYPGLKAEPASPAQDAQEPPAPPPPL--P 297
Query: 138 GTAILMSHAQTPQTGNGGISSSSVPPSPISQVSPA--SPPPPLPSSCLPMCSLVPSPLGT 195
A A P G++SSS P P+ SP+ +PP + LP P+P G+
Sbjct: 298 PYASCSPRASLPAPPLPGVNSSSETPPPLPPKSPSFQAPPQKAGAQALP---APPAPPGS 354
Query: 196 GPSL 199
P L
Sbjct: 355 QPFL 358
Score = 28.5 bits (62), Expect = 4.4
Identities = 17/37 (45%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 162 PPSPISQVSPASPPPPLPSSCLPMCSLV--PSPLGTG 196
PP P P PPPLPSS LV P PL G
Sbjct: 174 PPPPTPPPPPPPLPPPLPSSSPIKTPLVSPPGPLTKG 210
>gi|148886752 immunoglobulin superfamily, member 9B [Homo sapiens]
Length = 1349
Score = 35.0 bits (79), Expect = 0.047
Identities = 54/210 (25%), Positives = 74/210 (35%), Gaps = 39/210 (18%)
Query: 21 LPDPP---FRDSPMTPLGHQSGFSKRVQENGEP---FPRAANLPGSAQAPSPSA------ 68
+P PP ++D PM PL Q Q G P +P A PG+ PS
Sbjct: 1113 VPAPPAAKWQDRPMQPLVSQGQLRHTSQGMGIPVLPYPEPAE-PGAHGGPSTFGLDTRWY 1171
Query: 69 ---PSCPPAITVGYGAQGSHERRSFYLHLLHFRPP--GPTLGLAVGWAGGR---ALESAE 120
P P+ A+ S LH + +P P + G A +
Sbjct: 1172 EPQPRPRPSPRQARRAEPS-------LHQVVLQPSRLSPLTQSPLSSRTGSPELAARARP 1224
Query: 121 RTAMFLALASFSVLLVPGTAILMSHAQTPQTGNGGISSSSVPPS--------PISQVSPA 172
R + + L P A+ S TP TG+ SS S PS ++ P+
Sbjct: 1225 RPGLLQQAEMSEITLQPPAAVSFSRKSTPSTGSPSQSSRSGSPSYRPAMGFTTLATGYPS 1284
Query: 173 SPPPPLPS---SCLPMCSLVPSPLGTGPSL 199
PP P P+ L + PSP TG L
Sbjct: 1285 PPPGPAPAGPGDSLDVFGQTPSPRRTGEEL 1314
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.133 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,373,343
Number of Sequences: 37866
Number of extensions: 782370
Number of successful extensions: 10496
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 455
Number of HSP's that attempted gapping in prelim test: 7952
Number of HSP's gapped (non-prelim): 2567
length of query: 211
length of database: 18,247,518
effective HSP length: 98
effective length of query: 113
effective length of database: 14,536,650
effective search space: 1642641450
effective search space used: 1642641450
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.