Guide to the Human Genome
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Name: LOC100287180 Sequence: fasta or formatted (211aa) NCBI GI: 239745238
Description:

PREDICTED: hypothetical protein XP_002343415

Not currently referenced in the text

Other entries for this name:
alt mRNA {211aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         17           2
 C cysteine            2.4          5           1
 D aspartate           0.9          2           1
 E glutamate           2.8          6           1
 F phenylalanine       3.3          7           1
 G glycine             8.5         18           2
 H histidine           2.4          5           1
 I isoleucine          1.9          4           1
 K lysine              0.9          2           1
 L leucine            12.8         27           3
 M methionine          2.4          5           1
 N asparagine          1.9          4           1
 P proline            15.6         33           4
 Q glutamine           4.7         10           1
 R arginine            4.7         10           2
 S serine             14.2         30           4
 T threonine           4.7         10           1
 V valine              3.8          8           1
 W tryptophan          2.4          5           1
 Y tyrosine            1.4          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343415 
LOC100292038          1.000   PREDICTED: hypothetical protein XP_002344902 
LOC100287180          1.000   PREDICTED: hypothetical protein 
MAMSTR                0.038   MEF2 activating motif and SAP domain containing tra...
MAMSTR                0.038   MEF2 activating motif and SAP domain containing tran...
RERE                  0.038   atrophin-1 like protein isoform b 
RERE                  0.038   atrophin-1 like protein isoform a 
RERE                  0.038   atrophin-1 like protein isoform a 
LOC390595             0.036   PREDICTED: similar to ubiquitin-associated protein ...
LOC390595             0.036   PREDICTED: similar to ubiquitin-associated protein ...
LOC390595             0.036   PREDICTED: hypothetical protein 
PER3                  0.034   period 3 
SHANK1                0.031   SH3 and multiple ankyrin repeat domains 1 
DDN                   0.029   dendrin 
DIAPH3                0.029   diaphanous homolog 3 isoform b 
DIAPH3                0.029   diaphanous homolog 3 isoform a 
C9orf86               0.024   Rab-like GTP-binding protein 1 isoform 1 
HCFC1                 0.024   host cell factor 1 
ZNF469                0.024   zinc finger protein 469 
FMNL2                 0.024   formin-like 2 
CRTC2                 0.024   CREB regulated transcription coactivator 2 
PCLO                  0.024   piccolo isoform 2 
PCLO                  0.024   piccolo isoform 1 
SRCAP                 0.024   Snf2-related CBP activator protein 
KSR2                  0.024   kinase suppressor of ras 2 
CAMTA2                0.024   calmodulin binding transcription activator 2 
SPEN                  0.024   spen homolog, transcriptional regulator 
RBM42                 0.024   RNA binding motif protein 42 
WIPF3                 0.024   WAS/WASL interacting protein family, member 3 [Homo...
IGSF9B                0.024   immunoglobulin superfamily, member 9B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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