Guide to the Human Genome
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Name: CAMTA2 Sequence: fasta or formatted (1202aa) NCBI GI: 29826341
Description:

calmodulin binding transcription activator 2

Referenced in:

Calmodulin and Calcium

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8        106           3
 C cysteine            2.0         24           1
 D aspartate           3.7         45           3
 E glutamate           7.2         86           2
 F phenylalanine       3.1         37           2
 G glycine             6.7         80           3
 H histidine           2.7         33           2
 I isoleucine          3.4         41           2
 K lysine              4.0         48           2
 L leucine            10.4        125           3
 M methionine          1.9         23           1
 N asparagine          1.5         18           1
 P proline            10.7        129           3
 Q glutamine           4.2         51           2
 R arginine            6.7         80           3
 S serine             10.3        124           9
 T threonine           4.5         54           2
 V valine              4.6         55           3
 W tryptophan          1.4         17           1
 Y tyrosine            2.2         26           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calmodulin binding transcription activator 2 
CAMTA1                0.172   calmodulin-binding transcription activator 1 
FLJ22184              0.017   PREDICTED: hypothetical protein FLJ22184 
MYO9A                 0.015   myosin IXA 
PELP1                 0.015   proline, glutamic acid and leucine rich protein 1 [...
IQSEC2                0.015   IQ motif and Sec7 domain 2 isoform1 
SHANK1                0.015   SH3 and multiple ankyrin repeat domains 1 
FLJ22184              0.014   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.014   PREDICTED: hypothetical protein LOC80164 
NACA                  0.014   nascent polypeptide-associated complex alpha subuni...
ASPM                  0.013   asp (abnormal spindle)-like, microcephaly associate...
CDKN1C                0.013   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.013   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.013   cyclin-dependent kinase inhibitor 1C isoform a 
GLTSCR1               0.012   glioma tumor suppressor candidate region gene 1 [Ho...
UNCX                  0.012   UNC homeobox 
BAT3                  0.012   HLA-B associated transcript-3 isoform b 
BAT3                  0.012   HLA-B associated transcript-3 isoform b 
BAT3                  0.012   HLA-B associated transcript-3 isoform b 
BAT3                  0.012   HLA-B associated transcript-3 isoform a 
SF3A2                 0.012   splicing factor 3a, subunit 2 
RAPH1                 0.012   Ras association and pleckstrin homology domains 1 is...
ZIC5                  0.012   zinc finger protein of the cerebellum 5 
CASKIN1               0.012   CASK interacting protein 1 
KIAA1522              0.012   hypothetical protein LOC57648 
TAF4                  0.011   TBP-associated factor 4 
MLL2                  0.011   myeloid/lymphoid or mixed-lineage leukemia 2 
POM121                0.011   nuclear pore membrane protein 121 
WIPF2                 0.011   WIRE protein 
ZNF469                0.011   zinc finger protein 469 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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