Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239744995
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744995 PREDICTED: hypothetical protein XP_002343325 [Homo
sapiens]
(909 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239744995 PREDICTED: hypothetical protein XP_002343325 [Homo ... 1901 0.0
gi|239750685 PREDICTED: hypothetical protein XP_002347506 [Homo ... 1257 0.0
gi|239756161 PREDICTED: hypothetical protein [Homo sapiens] 480 e-135
gi|19924099 synapsin I isoform Ia [Homo sapiens] 55 4e-07
gi|19924097 synapsin I isoform Ib [Homo sapiens] 55 4e-07
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 48 5e-05
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 47 8e-05
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 47 8e-05
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 47 1e-04
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 46 2e-04
gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens] 46 2e-04
gi|163965366 nascent polypeptide-associated complex alpha subuni... 45 3e-04
gi|59806361 hypothetical protein LOC387104 [Homo sapiens] 45 4e-04
gi|113416996 PREDICTED: ankyrin repeat domain 33B [Homo sapiens] 45 4e-04
gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Hom... 44 5e-04
gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Hom... 44 5e-04
gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo ... 44 5e-04
gi|33286446 opioid growth factor receptor [Homo sapiens] 44 5e-04
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens] 44 7e-04
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens] 44 7e-04
gi|112382216 atrophin-1 like protein isoform a [Homo sapiens] 44 7e-04
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 44 7e-04
gi|150170670 piccolo isoform 2 [Homo sapiens] 44 9e-04
gi|150378539 piccolo isoform 1 [Homo sapiens] 44 9e-04
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 44 9e-04
gi|110832843 TBP-associated factor 4 [Homo sapiens] 43 0.001
gi|146219832 myosin light chain kinase 3 [Homo sapiens] 43 0.001
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 43 0.002
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 43 0.002
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 43 0.002
>gi|239744995 PREDICTED: hypothetical protein XP_002343325 [Homo
sapiens]
Length = 909
Score = 1901 bits (4924), Expect = 0.0
Identities = 909/909 (100%), Positives = 909/909 (100%)
Query: 1 MGWPSFCQAAWDSGAVSSEQESRTNCPRAACTNEGSTPAKLILERRSCGRVALVIRHLHP 60
MGWPSFCQAAWDSGAVSSEQESRTNCPRAACTNEGSTPAKLILERRSCGRVALVIRHLHP
Sbjct: 1 MGWPSFCQAAWDSGAVSSEQESRTNCPRAACTNEGSTPAKLILERRSCGRVALVIRHLHP 60
Query: 61 VQGPWTQAPAPMAILQRPGCGGPPLAQAVGLAARDHQKARAFSAPRPLSCAGWVPARLQD 120
VQGPWTQAPAPMAILQRPGCGGPPLAQAVGLAARDHQKARAFSAPRPLSCAGWVPARLQD
Sbjct: 61 VQGPWTQAPAPMAILQRPGCGGPPLAQAVGLAARDHQKARAFSAPRPLSCAGWVPARLQD 120
Query: 121 CCRHHPCGCSFQKPQAGDDGAHGEIPGSCSCTLAPRQSYWHCHGSRHTRSGYIGPQRQRS 180
CCRHHPCGCSFQKPQAGDDGAHGEIPGSCSCTLAPRQSYWHCHGSRHTRSGYIGPQRQRS
Sbjct: 121 CCRHHPCGCSFQKPQAGDDGAHGEIPGSCSCTLAPRQSYWHCHGSRHTRSGYIGPQRQRS 180
Query: 181 TSGQPSLRKSHGHWAAGTARGCFHQSLSTVQTCPRLVPQQPSPTELEPLGGQTLTVEATA 240
TSGQPSLRKSHGHWAAGTARGCFHQSLSTVQTCPRLVPQQPSPTELEPLGGQTLTVEATA
Sbjct: 181 TSGQPSLRKSHGHWAAGTARGCFHQSLSTVQTCPRLVPQQPSPTELEPLGGQTLTVEATA 240
Query: 241 LDLGMPPVLSPPYDFVQPAGPQGSLATEAREMPCGHRGSTREDCVCSRGALSPTAGVAGM 300
LDLGMPPVLSPPYDFVQPAGPQGSLATEAREMPCGHRGSTREDCVCSRGALSPTAGVAGM
Sbjct: 241 LDLGMPPVLSPPYDFVQPAGPQGSLATEAREMPCGHRGSTREDCVCSRGALSPTAGVAGM 300
Query: 301 GAAAERERGPGLTDEMQYTERDWEPPPQEAEQGAHGPAFQLVPVSQSDSIPLGLTLVKGQ 360
GAAAERERGPGLTDEMQYTERDWEPPPQEAEQGAHGPAFQLVPVSQSDSIPLGLTLVKGQ
Sbjct: 301 GAAAERERGPGLTDEMQYTERDWEPPPQEAEQGAHGPAFQLVPVSQSDSIPLGLTLVKGQ 360
Query: 361 LLERLCSPMRGAALPGPGCKDPEERAALWPHAKPSPPPSQEARCHQGQAVTGWHQPCGEP 420
LLERLCSPMRGAALPGPGCKDPEERAALWPHAKPSPPPSQEARCHQGQAVTGWHQPCGEP
Sbjct: 361 LLERLCSPMRGAALPGPGCKDPEERAALWPHAKPSPPPSQEARCHQGQAVTGWHQPCGEP 420
Query: 421 VTCRLPVPTHSLGPSKAPRSRPVQLGGLVPFPPKFLGLIMGRGAGKVSPLGLRARVKIAG 480
VTCRLPVPTHSLGPSKAPRSRPVQLGGLVPFPPKFLGLIMGRGAGKVSPLGLRARVKIAG
Sbjct: 421 VTCRLPVPTHSLGPSKAPRSRPVQLGGLVPFPPKFLGLIMGRGAGKVSPLGLRARVKIAG 480
Query: 481 TPVSWPWLALAHVVGVGLMVDGAEHQAGLGLRGGAPGMESLRGQVPLSTPLVMQDGAGCW 540
TPVSWPWLALAHVVGVGLMVDGAEHQAGLGLRGGAPGMESLRGQVPLSTPLVMQDGAGCW
Sbjct: 481 TPVSWPWLALAHVVGVGLMVDGAEHQAGLGLRGGAPGMESLRGQVPLSTPLVMQDGAGCW 540
Query: 541 QGPGRLDGPVPIEVVFPTNILHSCAEETASEVPAGSSLVDEDAGGTHGNYEDLVVAWGQR 600
QGPGRLDGPVPIEVVFPTNILHSCAEETASEVPAGSSLVDEDAGGTHGNYEDLVVAWGQR
Sbjct: 541 QGPGRLDGPVPIEVVFPTNILHSCAEETASEVPAGSSLVDEDAGGTHGNYEDLVVAWGQR 600
Query: 601 RRSLINEVLVYQAPSSPSCRMTVGHHCYRSRGSPSPSLCDGRNASHSRLSKNRAQNGIQE 660
RRSLINEVLVYQAPSSPSCRMTVGHHCYRSRGSPSPSLCDGRNASHSRLSKNRAQNGIQE
Sbjct: 601 RRSLINEVLVYQAPSSPSCRMTVGHHCYRSRGSPSPSLCDGRNASHSRLSKNRAQNGIQE 660
Query: 661 APRERVPAALTAVVGQPPIPPPLELRSVELRALLGPEVPGAVGAALRGGGEVGIQEGGVR 720
APRERVPAALTAVVGQPPIPPPLELRSVELRALLGPEVPGAVGAALRGGGEVGIQEGGVR
Sbjct: 661 APRERVPAALTAVVGQPPIPPPLELRSVELRALLGPEVPGAVGAALRGGGEVGIQEGGVR 720
Query: 721 GPPTSRPARAQGAQESPLPAPSEPPEAVEGKASPREQGEEGAPTQPCCGLAGGPQAGPTQ 780
GPPTSRPARAQGAQESPLPAPSEPPEAVEGKASPREQGEEGAPTQPCCGLAGGPQAGPTQ
Sbjct: 721 GPPTSRPARAQGAQESPLPAPSEPPEAVEGKASPREQGEEGAPTQPCCGLAGGPQAGPTQ 780
Query: 781 QPAARSGHPNGEIGQEGLGKLVPSPAPRELYLRATRAVAPGGAHAAGASISPAGPEHRED 840
QPAARSGHPNGEIGQEGLGKLVPSPAPRELYLRATRAVAPGGAHAAGASISPAGPEHRED
Sbjct: 781 QPAARSGHPNGEIGQEGLGKLVPSPAPRELYLRATRAVAPGGAHAAGASISPAGPEHRED 840
Query: 841 LTETQRPCPRSGALCRPQLLRDSPVGAARPVQHQELETRGNRQHACSSSEWKALGNGLIS 900
LTETQRPCPRSGALCRPQLLRDSPVGAARPVQHQELETRGNRQHACSSSEWKALGNGLIS
Sbjct: 841 LTETQRPCPRSGALCRPQLLRDSPVGAARPVQHQELETRGNRQHACSSSEWKALGNGLIS 900
Query: 901 CAELMLLPE 909
CAELMLLPE
Sbjct: 901 CAELMLLPE 909
>gi|239750685 PREDICTED: hypothetical protein XP_002347506 [Homo
sapiens]
Length = 684
Score = 1257 bits (3252), Expect = 0.0
Identities = 593/596 (99%), Positives = 594/596 (99%)
Query: 1 MGWPSFCQAAWDSGAVSSEQESRTNCPRAACTNEGSTPAKLILERRSCGRVALVIRHLHP 60
MGWPSFCQAAWDSGAVSSEQESRTNCPRAACTNEGSTPAKLILERRSCGRVALVIRHLHP
Sbjct: 1 MGWPSFCQAAWDSGAVSSEQESRTNCPRAACTNEGSTPAKLILERRSCGRVALVIRHLHP 60
Query: 61 VQGPWTQAPAPMAILQRPGCGGPPLAQAVGLAARDHQKARAFSAPRPLSCAGWVPARLQD 120
VQGPWTQAPAPMAILQRPGCGGPPLAQAVGLAARDHQKARAFSAPRPLSCAGWVPARLQD
Sbjct: 61 VQGPWTQAPAPMAILQRPGCGGPPLAQAVGLAARDHQKARAFSAPRPLSCAGWVPARLQD 120
Query: 121 CCRHHPCGCSFQKPQAGDDGAHGEIPGSCSCTLAPRQSYWHCHGSRHTRSGYIGPQRQRS 180
CCRHHPCGCSFQKPQAGDDGAHGEIPGSCSCTLAPRQSYWHCHGSRHTRSGYIGPQRQRS
Sbjct: 121 CCRHHPCGCSFQKPQAGDDGAHGEIPGSCSCTLAPRQSYWHCHGSRHTRSGYIGPQRQRS 180
Query: 181 TSGQPSLRKSHGHWAAGTARGCFHQSLSTVQTCPRLVPQQPSPTELEPLGGQTLTVEATA 240
TSGQPSLRKSHGHWAAGTARGCFHQSLSTVQTCPRLVPQQPSPTELEPLGGQTLTVEATA
Sbjct: 181 TSGQPSLRKSHGHWAAGTARGCFHQSLSTVQTCPRLVPQQPSPTELEPLGGQTLTVEATA 240
Query: 241 LDLGMPPVLSPPYDFVQPAGPQGSLATEAREMPCGHRGSTREDCVCSRGALSPTAGVAGM 300
LDLG+PPVLSPPYDFVQPAGPQGSLATEAREMPCGHRGSTREDCVCSRGALSPTAGVAGM
Sbjct: 241 LDLGLPPVLSPPYDFVQPAGPQGSLATEAREMPCGHRGSTREDCVCSRGALSPTAGVAGM 300
Query: 301 GAAAERERGPGLTDEMQYTERDWEPPPQEAEQGAHGPAFQLVPVSQSDSIPLGLTLVKGQ 360
GAAAERERGPGLTDEMQYTERDWEPPPQEAEQGAHGPAFQLVPVSQSDSIPLGLTLVKGQ
Sbjct: 301 GAAAERERGPGLTDEMQYTERDWEPPPQEAEQGAHGPAFQLVPVSQSDSIPLGLTLVKGQ 360
Query: 361 LLERLCSPMRGAALPGPGCKDPEERAALWPHAKPSPPPSQEARCHQGQAVTGWHQPCGEP 420
LLERLCSPMRGAALPGPGCKDPEERAALWPHAKPSPPPSQEARCHQGQAVTGWHQPCGEP
Sbjct: 361 LLERLCSPMRGAALPGPGCKDPEERAALWPHAKPSPPPSQEARCHQGQAVTGWHQPCGEP 420
Query: 421 VTCRLPVPTHSLGPSKAPRSRPVQLGGLVPFPPKFLGLIMGRGAGKVSPLGLRARVKIAG 480
VTCRLPVPTHSLGPSKAPRSRPVQLGGLVPFPPKFLGLIMGRGAGKVSPLGLRARVKIAG
Sbjct: 421 VTCRLPVPTHSLGPSKAPRSRPVQLGGLVPFPPKFLGLIMGRGAGKVSPLGLRARVKIAG 480
Query: 481 TPVSWPWLALAHVVGVGLMVDGAEHQAGLGLRGGAPGMESLRGQVPLSTPLVMQDGAGCW 540
TPVSWPWLALAHVVGVGLMVDGAEHQAGLGLRGGAPGMESLRGQVPLSTPLVMQDGAGCW
Sbjct: 481 TPVSWPWLALAHVVGVGLMVDGAEHQAGLGLRGGAPGMESLRGQVPLSTPLVMQDGAGCW 540
Query: 541 QGPGRLDGPVPIEVVFPTNILHSCAEETASEVPAGSSLVDEDAGGTHGNYEDLVVA 596
QGPGRLDGPVPIEVVFPTNILHSCAEETASEVPAGSSLVDEDAGGTHGNYEDL A
Sbjct: 541 QGPGRLDGPVPIEVVFPTNILHSCAEETASEVPAGSSLVDEDAGGTHGNYEDLARA 596
>gi|239756161 PREDICTED: hypothetical protein [Homo sapiens]
Length = 229
Score = 480 bits (1235), Expect = e-135
Identities = 228/259 (88%), Positives = 229/259 (88%), Gaps = 30/259 (11%)
Query: 1 MGWPSFCQAAWDSGAVSSEQESRTNCPRAACTNEGSTPAKLILERRSCGRVALVIRHLHP 60
MGWPSFCQAAWDSGAVSSEQESRTNCPRAACTNEGSTPAKLILERRSCGRVALVIRHLHP
Sbjct: 1 MGWPSFCQAAWDSGAVSSEQESRTNCPRAACTNEGSTPAKLILERRSCGRVALVIRHLHP 60
Query: 61 VQGPWTQAPAPMAILQRPGCGGPPLAQAVGLAARDHQKARAFSAPRPLSCAGWVPARLQD 120
VQGPWTQAPAPMAILQRPGCGGPPLAQAVGLAARDHQKARAFSAPRPLSCAGWVPARLQD
Sbjct: 61 VQGPWTQAPAPMAILQRPGCGGPPLAQAVGLAARDHQKARAFSAPRPLSCAGWVPARLQD 120
Query: 121 CCRHHPCGCSFQKPQAGDDGAHGEIPGSCSCTLAPRQSYWHCHGSRHTRSGYIGPQRQRS 180
CCRHHPCGCSFQKPQAGDDGAHGEIPGSCSCTLAPRQSYWHCHGSRHTRSGYIGPQRQRS
Sbjct: 121 CCRHHPCGCSFQKPQAGDDGAHGEIPGSCSCTLAPRQSYWHCHGSRHTRSGYIGPQRQRS 180
Query: 181 TSGQPSLRKSHGHWAAGTARGCFHQSLSTVQTCPRLVPQQPSPTELEPLGGQTLTVEATA 240
TSGQPSLRKSHGHWAAGTAR GQTLTVEATA
Sbjct: 181 TSGQPSLRKSHGHWAAGTAR------------------------------GQTLTVEATA 210
Query: 241 LDLGMPPVLSPPYDFVQPA 259
LDLG+PPVLSPPYDFVQPA
Sbjct: 211 LDLGLPPVLSPPYDFVQPA 229
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 54.7 bits (130), Expect = 4e-07
Identities = 71/262 (27%), Positives = 94/262 (35%), Gaps = 29/262 (11%)
Query: 626 HCYRSRGSPSPSLCDGRNASHSRLSKNRAQNGIQEAPRERVPAALTA--VVGQPPIPPPL 683
H GS P + D ++ + + Q PR+R A GQ P P L
Sbjct: 383 HIIEVVGSSMPLIGDHQDEDKQLIVELVVNKMAQALPRQRQRDASPGRGSHGQTPSPGAL 442
Query: 684 ELRSVELRALLGPEVPGAVGAALRGGGEVGIQEGGVRGPPTSRPARAQGAQE-------- 735
L + GP P +GG +GPP + QG Q
Sbjct: 443 PLGRQTSQQPAGP--PAQQRPPPQGGPPQPGPGPQRQGPPLQQRPPPQGQQHLSGLGPPA 500
Query: 736 -SPLP----APSEPPEAVEGKASPREQGEEGAPTQPCCGLAGGPQAGPTQQPAARSGHPN 790
SPLP +P+ P+ +A+P QG+ G ++P +AGGP A P +P A S P
Sbjct: 501 GSPLPQRLPSPTSAPQQPASQAAPPTQGQ-GRQSRP---VAGGPGAPPAARPPA-SPSPQ 555
Query: 791 GEIG--QEGLGKLVPSPAPRELYLRATRAVAPGGAHAAGASISPAGPEHREDLTETQRPC 848
+ G Q V PAP + PGG G P GP P
Sbjct: 556 RQAGPPQATRQTSVSGPAPPK-----ASGAPPGGQQRQGPPQKPPGPAGPTRQASQAGPV 610
Query: 849 PRSGALCRPQLLRDSPVGAARP 870
PR+G Q P A RP
Sbjct: 611 PRTGPPTTQQPRPSGPGPAGRP 632
Score = 39.7 bits (91), Expect = 0.013
Identities = 40/136 (29%), Positives = 55/136 (40%), Gaps = 31/136 (22%)
Query: 717 GGVRGPPTSRPARAQGAQESPLPAPSEPPEAVEGKASPREQG-------EEGAPTQPCCG 769
GG PP +RP + Q P + +V G A P+ G +G P +P
Sbjct: 538 GGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKP--- 594
Query: 770 LAGGPQAGPTQQ-----PAARSGHPNGEIGQEGLGKLVPSPAPR---ELYLRATRAVAPG 821
GP AGPT+Q P R+G P + + P PA R +L + ++ V P
Sbjct: 595 --PGP-AGPTRQASQAGPVPRTGPPTTQQPRPS----GPGPAGRPKPQLAQKPSQDVPPP 647
Query: 822 GAHAAGASISPAGPEH 837
AAG GP H
Sbjct: 648 ATAAAG------GPPH 657
Score = 37.0 bits (84), Expect = 0.084
Identities = 53/197 (26%), Positives = 65/197 (32%), Gaps = 41/197 (20%)
Query: 675 GQPPIP--------PPLELR----SVELRALLGPEVPGAVGAALRGGGEVGIQEGGVRGP 722
G PP P PPL+ R + + LGP + L Q P
Sbjct: 465 GGPPQPGPGPQRQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAP 524
Query: 723 PTSRPARAQGAQESPLPAPSEPPEAVEGKASPREQGEEGAPTQPCCGLAGGPQAGPTQQP 782
PT + QG Q P+ P A ASP Q + G P GP P
Sbjct: 525 PT----QGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGP------AP 574
Query: 783 AARSGHPNGEIGQEGLGKLVPSPAPRELYLRATRAVAPGGAHAAGASISPAGPEHREDLT 842
SG P G ++G + P PA G A S AGP R
Sbjct: 575 PKASGAPPGGQQRQGPPQKPPGPA--------------GPTRQA----SQAGPVPRTGPP 616
Query: 843 ETQRPCPRS-GALCRPQ 858
TQ+P P G RP+
Sbjct: 617 TTQQPRPSGPGPAGRPK 633
Score = 32.7 bits (73), Expect = 1.6
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 12/77 (15%)
Query: 368 PMRGAALPGPGCKDPEERAALWPHAKPSPPPSQEARCHQGQAVTGWHQPCGEPVTCRLPV 427
P G PGPG P+ + P + PPP + Q ++G P G P+ RLP
Sbjct: 463 PQGGPPQPGPG---PQRQG---PPLQQRPPPQGQ------QHLSGLGPPAGSPLPQRLPS 510
Query: 428 PTHSLGPSKAPRSRPVQ 444
PT + + + P Q
Sbjct: 511 PTSAPQQPASQAAPPTQ 527
Score = 30.4 bits (67), Expect = 7.8
Identities = 49/200 (24%), Positives = 61/200 (30%), Gaps = 33/200 (16%)
Query: 174 GPQRQRSTSGQ--PSLRKSHGHWAAGTARGCFHQSLSTVQTCPRLVPQQPSPTELEPLGG 231
GPQRQ Q P + H A Q L + P PQQP+ P G
Sbjct: 473 GPQRQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPS----PTSAPQQPASQAAPPTQG 528
Query: 232 QTLTVEATALDLGMPPVLSPP-----------------YDFVQPAGPQGSLATEAREM-- 272
Q A G PP PP PA P+ S A +
Sbjct: 529 QGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQ 588
Query: 273 -----PCGHRGSTREDCVCSRGALSPTAGVAGMGAAAERERGPGLTDEMQYTERDWEPPP 327
P G G TR+ S+ P G GP + Q ++ + P
Sbjct: 589 GPPQKPPGPAGPTRQ---ASQAGPVPRTGPPTTQQPRPSGPGPAGRPKPQLAQKPSQDVP 645
Query: 328 QEAEQGAHGPAFQLVPVSQS 347
A A GP + SQS
Sbjct: 646 PPATAAAGGPPHPQLNKSQS 665
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 54.7 bits (130), Expect = 4e-07
Identities = 71/262 (27%), Positives = 94/262 (35%), Gaps = 29/262 (11%)
Query: 626 HCYRSRGSPSPSLCDGRNASHSRLSKNRAQNGIQEAPRERVPAALTA--VVGQPPIPPPL 683
H GS P + D ++ + + Q PR+R A GQ P P L
Sbjct: 383 HIIEVVGSSMPLIGDHQDEDKQLIVELVVNKMAQALPRQRQRDASPGRGSHGQTPSPGAL 442
Query: 684 ELRSVELRALLGPEVPGAVGAALRGGGEVGIQEGGVRGPPTSRPARAQGAQE-------- 735
L + GP P +GG +GPP + QG Q
Sbjct: 443 PLGRQTSQQPAGP--PAQQRPPPQGGPPQPGPGPQRQGPPLQQRPPPQGQQHLSGLGPPA 500
Query: 736 -SPLP----APSEPPEAVEGKASPREQGEEGAPTQPCCGLAGGPQAGPTQQPAARSGHPN 790
SPLP +P+ P+ +A+P QG+ G ++P +AGGP A P +P A S P
Sbjct: 501 GSPLPQRLPSPTSAPQQPASQAAPPTQGQ-GRQSRP---VAGGPGAPPAARPPA-SPSPQ 555
Query: 791 GEIG--QEGLGKLVPSPAPRELYLRATRAVAPGGAHAAGASISPAGPEHREDLTETQRPC 848
+ G Q V PAP + PGG G P GP P
Sbjct: 556 RQAGPPQATRQTSVSGPAPPK-----ASGAPPGGQQRQGPPQKPPGPAGPTRQASQAGPV 610
Query: 849 PRSGALCRPQLLRDSPVGAARP 870
PR+G Q P A RP
Sbjct: 611 PRTGPPTTQQPRPSGPGPAGRP 632
Score = 39.7 bits (91), Expect = 0.013
Identities = 40/136 (29%), Positives = 55/136 (40%), Gaps = 31/136 (22%)
Query: 717 GGVRGPPTSRPARAQGAQESPLPAPSEPPEAVEGKASPREQG-------EEGAPTQPCCG 769
GG PP +RP + Q P + +V G A P+ G +G P +P
Sbjct: 538 GGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKP--- 594
Query: 770 LAGGPQAGPTQQ-----PAARSGHPNGEIGQEGLGKLVPSPAPR---ELYLRATRAVAPG 821
GP AGPT+Q P R+G P + + P PA R +L + ++ V P
Sbjct: 595 --PGP-AGPTRQASQAGPVPRTGPPTTQQPRPS----GPGPAGRPKPQLAQKPSQDVPPP 647
Query: 822 GAHAAGASISPAGPEH 837
AAG GP H
Sbjct: 648 ATAAAG------GPPH 657
Score = 37.0 bits (84), Expect = 0.084
Identities = 53/197 (26%), Positives = 65/197 (32%), Gaps = 41/197 (20%)
Query: 675 GQPPIP--------PPLELR----SVELRALLGPEVPGAVGAALRGGGEVGIQEGGVRGP 722
G PP P PPL+ R + + LGP + L Q P
Sbjct: 465 GGPPQPGPGPQRQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAP 524
Query: 723 PTSRPARAQGAQESPLPAPSEPPEAVEGKASPREQGEEGAPTQPCCGLAGGPQAGPTQQP 782
PT + QG Q P+ P A ASP Q + G P GP P
Sbjct: 525 PT----QGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGP------AP 574
Query: 783 AARSGHPNGEIGQEGLGKLVPSPAPRELYLRATRAVAPGGAHAAGASISPAGPEHREDLT 842
SG P G ++G + P PA G A S AGP R
Sbjct: 575 PKASGAPPGGQQRQGPPQKPPGPA--------------GPTRQA----SQAGPVPRTGPP 616
Query: 843 ETQRPCPRS-GALCRPQ 858
TQ+P P G RP+
Sbjct: 617 TTQQPRPSGPGPAGRPK 633
Score = 32.7 bits (73), Expect = 1.6
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 12/77 (15%)
Query: 368 PMRGAALPGPGCKDPEERAALWPHAKPSPPPSQEARCHQGQAVTGWHQPCGEPVTCRLPV 427
P G PGPG P+ + P + PPP + Q ++G P G P+ RLP
Sbjct: 463 PQGGPPQPGPG---PQRQG---PPLQQRPPPQGQ------QHLSGLGPPAGSPLPQRLPS 510
Query: 428 PTHSLGPSKAPRSRPVQ 444
PT + + + P Q
Sbjct: 511 PTSAPQQPASQAAPPTQ 527
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 47.8 bits (112), Expect = 5e-05
Identities = 54/179 (30%), Positives = 65/179 (36%), Gaps = 40/179 (22%)
Query: 708 GGGEVGIQEGGVR--GPPTSRPARAQGAQESPLPAPSEPP--------EAVEGKASPREQ 757
GGG G G GPP P Q P P P+ PP +A P E
Sbjct: 6 GGGRPGESPGATPAPGPPPPPPPAPPQQQPPPPPPPAPPPGPGPAPPQHPPRAEALPPEA 65
Query: 758 GEEGAP------TQPCCGLAGGPQAGPTQQPAARSGHPNGEIGQEGLGKLVPSPAPRELY 811
+EG P CG G P A T + G PNGE G+ G+ SPA E
Sbjct: 66 ADEGGPRGRLRSRDSSCGRPGTPGAASTAK-----GSPNGECGR---GEPQCSPAGPEGP 117
Query: 812 LRATR------------AVAPGGAHAAGA-SISPAGPEHREDLTETQRPCPRSGALCRP 857
R + A PG A AG+ PAG + QR + GAL +P
Sbjct: 118 ARGPKVSFSCRGAASGPAPGPGPAEEAGSEEAGPAGEPRGSQASFMQR---QFGALLQP 173
Score = 41.2 bits (95), Expect = 0.004
Identities = 54/199 (27%), Positives = 71/199 (35%), Gaps = 14/199 (7%)
Query: 646 HSRLSKNRAQNGIQEAPRERVPAALTAVVGQ-----PPIPPPLELRSV--ELRALLGPEV 698
+S + N+ IQE + A +GQ PP PPP ++ S L+
Sbjct: 679 NSGVFNNQENAIIQEIVKYDREMVQQAELGQRVGLFPPPPPPPQVTSAIATLQQAAAMSF 738
Query: 699 PGAVGAALRGGGEVGIQEGGVRGPPTSRPARAQGAQESPLPAPSEPPEAVEGKASPREQG 758
V L G +G R PP PA A P P+ PP A +PR
Sbjct: 739 CPQVARPLVGPLALGSPRLVRRPPPGPAPAAASPGP----PPPASPPGAPASPRAPRTSP 794
Query: 759 EEGAPTQPCCGLA-GGPQAGPTQQP--AARSGHPNGEIGQEGLGKLVPSPAPRELYLRAT 815
G P P G A + +P A++ P+G G + S PR A
Sbjct: 795 YGGLPAAPLAGPALPARRLSRASRPLSASQPSLPHGAPGPAASTRPASSSTPRLGPTPAA 854
Query: 816 RAVAPGGAHAAGASISPAG 834
RA AP AS AG
Sbjct: 855 RAAAPSPDRRDSASPGAAG 873
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 47.0 bits (110), Expect = 8e-05
Identities = 48/155 (30%), Positives = 61/155 (39%), Gaps = 27/155 (17%)
Query: 695 GPEVPGAVGAALRGGGEVGIQEGGVRGPPTSRPARAQ-GAQESPLPAPSEPPEAVEGKAS 753
GP PGA GA GE G G RGP ++ R + G SP PA + +G
Sbjct: 364 GPGFPGAPGAK----GEAG--PTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDG--I 415
Query: 754 PREQGEEGAPTQPCCGLAG-----GPQAGPTQQPAARSGHPNGEIGQEGLGKLVPSPAPR 808
P +G GAP G+AG GP+ P Q A P G+ G+ G+ P+
Sbjct: 416 PGAKGSAGAP-----GIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPK 470
Query: 809 ELYLRATRAVAPG--------GAHAAGASISPAGP 835
A APG GA + P GP
Sbjct: 471 GEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGP 505
Score = 40.4 bits (93), Expect = 0.008
Identities = 155/599 (25%), Positives = 190/599 (31%), Gaps = 117/599 (19%)
Query: 259 AGPQGSLATEAREMPCGHRGSTREDCVCSRGALSPTAGVAGMGAAAERERGPGLTDEMQY 318
AGP G+ E + P G G+ T G+ G +A PG+ +
Sbjct: 377 AGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAG---APGIAGAPGF 433
Query: 319 TERDWEPPPQEAEQGAHGPAFQLVPVSQSDSIPLGLTLVKGQLLERLCSPMRGAALPGPG 378
P PQ GA GP L P Q+ G+ KG+ + PGP
Sbjct: 434 PGPRGPPGPQ----GATGP---LGPKGQTGEP--GIAGFKGEQGPK--------GEPGPA 476
Query: 379 CKDPEERAALWPHAKPSPPPSQEARCHQGQ-AVTGWHQPCGE---PVTCRLPVPTHSLGP 434
P P P + R +G+ G P GE P P GP
Sbjct: 477 ----------GPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGP 526
Query: 435 SKAPRSR-PVQLGGLV-----PFPPKFLGLIMGRGA----------GKVSPLGLRARVKI 478
AP R P L G P P GL RG GKV P G
Sbjct: 527 KGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGR 586
Query: 479 AGTPVSWPWLALAHVVGVGLMVDGAEHQAGLGLRGGAPGMESLRGQVPLSTPLVMQDGAG 538
G P V+G GA + G G PG LRG L +DG
Sbjct: 587 PGPPGPQGARGQPGVMGFP-GPKGANGEPGKAGEKGLPGAPGLRG-------LPGKDGET 638
Query: 539 CWQGPGRLDGPVPIEVVFPTNILHSCAEETASEVPAGSSLVDEDAG--GTHGNYEDLVVA 596
GP GP E + P+G + G G G D V
Sbjct: 639 GAAGPPGPAGPAGER------------GEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVP 686
Query: 597 WGQRRRSLINEVLVYQAPS---SPSCRMTVGHHCYRSRGSPSPSLCDGRNASHSRLSKNR 653
L+ P SP + G RG P DG +
Sbjct: 687 GEAGAPGLVGPRGERGFPGERGSPGAQGLQG-----PRGLPGTPGTDGPKGASGPAGPPG 741
Query: 654 AQN--GIQEAPRERVPAALTAVVGQPPIPPPLELRSVELRALLGPEVPGAVGAALRGGGE 711
AQ G+Q P ER A + G R +G + G GA + GG
Sbjct: 742 AQGPPGLQGMPGERGAAGIAGPKGD--------------RGDVGEK--GPEGAPGKDGGR 785
Query: 712 VGIQEGGVRGPPTSRPARAQGAQESPLPAPSEPPEAVEGKASPREQGEEGAPTQPCCGLA 771
G+ G GPP PA A G E P P + + +P E+GE G P G A
Sbjct: 786 -GLT--GPIGPPG--PAGANG--EKGEVGPPGPAGSAGARGAPGERGETGPPGP--AGFA 836
Query: 772 GGPQAGPTQQPAARSGHPNGEIGQEG----LGKLVPSPAPRELYLRATRAVAPGGAHAA 826
G P G QP A+ GE GQ+G G PS AP T P GA A
Sbjct: 837 GPP--GADGQPGAKG--EQGEAGQKGDAGAPGPQGPSGAPGP--QGPTGVTGPKGARGA 889
Score = 39.7 bits (91), Expect = 0.013
Identities = 63/223 (28%), Positives = 76/223 (34%), Gaps = 46/223 (20%)
Query: 632 GSPSPSLCDGRNASHSRLSKNRAQNGIQEAPRERVPAALTAVVGQPPIPPPLELRSVELR 691
GSP P+ G N +GI P + A + G P P P R
Sbjct: 399 GSPGPAGASG----------NPGTDGI---PGAKGSAGAPGIAGAPGFPGP--------R 437
Query: 692 ALLGPEVPGAVGAALRGG--GEVGIQ----EGGVRGPPTSRPARAQGAQESPLPAPSEPP 745
GP+ GA G G GE GI E G +G P PA QGA P PA E
Sbjct: 438 GPPGPQ--GATGPLGPKGQTGEPGIAGFKGEQGPKGEPG--PAGPQGA---PGPAGEEGK 490
Query: 746 EAVEGKAS-------PREQGEEGAPTQPCCGLAGGPQAGPTQQPAARSGHPNGEIGQEGL 798
G+ P E+G G P GP+ P ++ + P G G G
Sbjct: 491 RGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGR 550
Query: 799 GKLVPSPAPRELYLRATRA-----VAPGGAHAAGASISPAGPE 836
P R L R A V P GA P GP+
Sbjct: 551 PGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQ 593
Score = 38.9 bits (89), Expect = 0.022
Identities = 71/223 (31%), Positives = 83/223 (37%), Gaps = 20/223 (8%)
Query: 657 GIQEAPRERVPAALTAVVGQPPIPP-PLELRSVELRALLGPEVPGAVGAALRGGGEVGIQ 715
G + AP ER P+ L G P P E R L G PG G + G
Sbjct: 525 GPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGR--PGDAGPQGKVGPSGAPG 582
Query: 716 EGGVRGPPTSRPARAQ-GAQESPLP--APSEPPEAVEGKASPREQGEEGAPTQPCCGLAG 772
E G GPP + AR Q G P P A EP +A E K P G G P + A
Sbjct: 583 EDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGE-KGLPGAPGLRGLPGKDGETGAA 641
Query: 773 GPQAGPTQQPAARSGHPNGEIGQEGLGKLVPSPAPRELYLRATRAVAPGGAHAAGASISP 832
GP GP PA G G G G L P P + PG A A G + P
Sbjct: 642 GP-PGPA-GPAGERGE-QGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGL-VGP 697
Query: 833 AGPEHREDLTETQRPCPRSGALCRPQLL-----RDSPVGAARP 870
G E +R P + L P+ L D P GA+ P
Sbjct: 698 RG----ERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGP 736
Score = 34.3 bits (77), Expect = 0.54
Identities = 44/159 (27%), Positives = 54/159 (33%), Gaps = 33/159 (20%)
Query: 699 PGAVGAALRGGGEVGIQEGGVRGPPTSR----PARAQGAQESP-LPAPSEPPEAVEGKAS 753
PG G + G G RG P R PA A GA+ + P P+ PP V
Sbjct: 305 PGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGG 364
Query: 754 PREQGEEGAPTQPCCGLAGGPQA--GPTQQ--------PAARSGHP--------NGEIGQ 795
P G GA + A GP+ GP + PA SG+P G G
Sbjct: 365 PGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGA 424
Query: 796 EGLGKLVPSPAPRELYLRATRAVAPGGAHAAGASISPAG 834
G+ P PR P G A + P G
Sbjct: 425 PGIAGAPGFPGPR----------GPPGPQGATGPLGPKG 453
Score = 32.3 bits (72), Expect = 2.1
Identities = 47/142 (33%), Positives = 57/142 (40%), Gaps = 28/142 (19%)
Query: 698 VPGAVGAALRG-GGEVGIQEGGVRGPP-TSRPARAQGAQESPLPAPSEPPEAVEGKASPR 755
+PGA G LRG G+ G E G GPP + PA +G Q +P P+
Sbjct: 622 LPGAPG--LRGLPGKDG--ETGAAGPPGPAGPAGERGEQGAPGPSGF------------- 664
Query: 756 EQGEEGAPTQPCCGLAGGPQAGPTQQPAARSGHPNGEIGQEGLGKLVPSPAPRELYLRAT 815
QG G P P G G Q P + A P GE G G +P L+
Sbjct: 665 -QGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPG-----ERGSPGAQGLQGP 718
Query: 816 RAV--APGGAHAAGASISPAGP 835
R + PG GAS PAGP
Sbjct: 719 RGLPGTPGTDGPKGAS-GPAGP 739
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 47.0 bits (110), Expect = 8e-05
Identities = 48/155 (30%), Positives = 61/155 (39%), Gaps = 27/155 (17%)
Query: 695 GPEVPGAVGAALRGGGEVGIQEGGVRGPPTSRPARAQ-GAQESPLPAPSEPPEAVEGKAS 753
GP PGA GA GE G G RGP ++ R + G SP PA + +G
Sbjct: 295 GPGFPGAPGAK----GEAG--PTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDG--I 346
Query: 754 PREQGEEGAPTQPCCGLAG-----GPQAGPTQQPAARSGHPNGEIGQEGLGKLVPSPAPR 808
P +G GAP G+AG GP+ P Q A P G+ G+ G+ P+
Sbjct: 347 PGAKGSAGAP-----GIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPK 401
Query: 809 ELYLRATRAVAPG--------GAHAAGASISPAGP 835
A APG GA + P GP
Sbjct: 402 GEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGP 436
Score = 40.4 bits (93), Expect = 0.008
Identities = 155/599 (25%), Positives = 190/599 (31%), Gaps = 117/599 (19%)
Query: 259 AGPQGSLATEAREMPCGHRGSTREDCVCSRGALSPTAGVAGMGAAAERERGPGLTDEMQY 318
AGP G+ E + P G G+ T G+ G +A PG+ +
Sbjct: 308 AGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAG---APGIAGAPGF 364
Query: 319 TERDWEPPPQEAEQGAHGPAFQLVPVSQSDSIPLGLTLVKGQLLERLCSPMRGAALPGPG 378
P PQ GA GP L P Q+ G+ KG+ + PGP
Sbjct: 365 PGPRGPPGPQ----GATGP---LGPKGQTGEP--GIAGFKGEQGPK--------GEPGPA 407
Query: 379 CKDPEERAALWPHAKPSPPPSQEARCHQGQ-AVTGWHQPCGE---PVTCRLPVPTHSLGP 434
P P P + R +G+ G P GE P P GP
Sbjct: 408 ----------GPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGP 457
Query: 435 SKAPRSR-PVQLGGLV-----PFPPKFLGLIMGRGA----------GKVSPLGLRARVKI 478
AP R P L G P P GL RG GKV P G
Sbjct: 458 KGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGR 517
Query: 479 AGTPVSWPWLALAHVVGVGLMVDGAEHQAGLGLRGGAPGMESLRGQVPLSTPLVMQDGAG 538
G P V+G GA + G G PG LRG L +DG
Sbjct: 518 PGPPGPQGARGQPGVMGFP-GPKGANGEPGKAGEKGLPGAPGLRG-------LPGKDGET 569
Query: 539 CWQGPGRLDGPVPIEVVFPTNILHSCAEETASEVPAGSSLVDEDAG--GTHGNYEDLVVA 596
GP GP E + P+G + G G G D V
Sbjct: 570 GAAGPPGPAGPAGER------------GEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVP 617
Query: 597 WGQRRRSLINEVLVYQAPS---SPSCRMTVGHHCYRSRGSPSPSLCDGRNASHSRLSKNR 653
L+ P SP + G RG P DG +
Sbjct: 618 GEAGAPGLVGPRGERGFPGERGSPGAQGLQG-----PRGLPGTPGTDGPKGASGPAGPPG 672
Query: 654 AQN--GIQEAPRERVPAALTAVVGQPPIPPPLELRSVELRALLGPEVPGAVGAALRGGGE 711
AQ G+Q P ER A + G R +G + G GA + GG
Sbjct: 673 AQGPPGLQGMPGERGAAGIAGPKGD--------------RGDVGEK--GPEGAPGKDGGR 716
Query: 712 VGIQEGGVRGPPTSRPARAQGAQESPLPAPSEPPEAVEGKASPREQGEEGAPTQPCCGLA 771
G+ G GPP PA A G E P P + + +P E+GE G P G A
Sbjct: 717 -GLT--GPIGPPG--PAGANG--EKGEVGPPGPAGSAGARGAPGERGETGPPGP--AGFA 767
Query: 772 GGPQAGPTQQPAARSGHPNGEIGQEG----LGKLVPSPAPRELYLRATRAVAPGGAHAA 826
G P G QP A+ GE GQ+G G PS AP T P GA A
Sbjct: 768 GPP--GADGQPGAKG--EQGEAGQKGDAGAPGPQGPSGAPGP--QGPTGVTGPKGARGA 820
Score = 39.7 bits (91), Expect = 0.013
Identities = 63/223 (28%), Positives = 76/223 (34%), Gaps = 46/223 (20%)
Query: 632 GSPSPSLCDGRNASHSRLSKNRAQNGIQEAPRERVPAALTAVVGQPPIPPPLELRSVELR 691
GSP P+ G N +GI P + A + G P P P R
Sbjct: 330 GSPGPAGASG----------NPGTDGI---PGAKGSAGAPGIAGAPGFPGP--------R 368
Query: 692 ALLGPEVPGAVGAALRGG--GEVGIQ----EGGVRGPPTSRPARAQGAQESPLPAPSEPP 745
GP+ GA G G GE GI E G +G P PA QGA P PA E
Sbjct: 369 GPPGPQ--GATGPLGPKGQTGEPGIAGFKGEQGPKGEPG--PAGPQGA---PGPAGEEGK 421
Query: 746 EAVEGKAS-------PREQGEEGAPTQPCCGLAGGPQAGPTQQPAARSGHPNGEIGQEGL 798
G+ P E+G G P GP+ P ++ + P G G G
Sbjct: 422 RGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGR 481
Query: 799 GKLVPSPAPRELYLRATRA-----VAPGGAHAAGASISPAGPE 836
P R L R A V P GA P GP+
Sbjct: 482 PGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQ 524
Score = 38.9 bits (89), Expect = 0.022
Identities = 71/223 (31%), Positives = 83/223 (37%), Gaps = 20/223 (8%)
Query: 657 GIQEAPRERVPAALTAVVGQPPIPP-PLELRSVELRALLGPEVPGAVGAALRGGGEVGIQ 715
G + AP ER P+ L G P P E R L G PG G + G
Sbjct: 456 GPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGR--PGDAGPQGKVGPSGAPG 513
Query: 716 EGGVRGPPTSRPARAQ-GAQESPLP--APSEPPEAVEGKASPREQGEEGAPTQPCCGLAG 772
E G GPP + AR Q G P P A EP +A E K P G G P + A
Sbjct: 514 EDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGE-KGLPGAPGLRGLPGKDGETGAA 572
Query: 773 GPQAGPTQQPAARSGHPNGEIGQEGLGKLVPSPAPRELYLRATRAVAPGGAHAAGASISP 832
GP GP PA G G G G L P P + PG A A G + P
Sbjct: 573 GP-PGPA-GPAGERGE-QGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGL-VGP 628
Query: 833 AGPEHREDLTETQRPCPRSGALCRPQLL-----RDSPVGAARP 870
G E +R P + L P+ L D P GA+ P
Sbjct: 629 RG----ERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGP 667
Score = 34.3 bits (77), Expect = 0.54
Identities = 44/159 (27%), Positives = 54/159 (33%), Gaps = 33/159 (20%)
Query: 699 PGAVGAALRGGGEVGIQEGGVRGPPTSR----PARAQGAQESP-LPAPSEPPEAVEGKAS 753
PG G + G G RG P R PA A GA+ + P P+ PP V
Sbjct: 236 PGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGG 295
Query: 754 PREQGEEGAPTQPCCGLAGGPQA--GPTQQ--------PAARSGHP--------NGEIGQ 795
P G GA + A GP+ GP + PA SG+P G G
Sbjct: 296 PGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGA 355
Query: 796 EGLGKLVPSPAPRELYLRATRAVAPGGAHAAGASISPAG 834
G+ P PR P G A + P G
Sbjct: 356 PGIAGAPGFPGPR----------GPPGPQGATGPLGPKG 384
Score = 32.3 bits (72), Expect = 2.1
Identities = 47/142 (33%), Positives = 57/142 (40%), Gaps = 28/142 (19%)
Query: 698 VPGAVGAALRG-GGEVGIQEGGVRGPP-TSRPARAQGAQESPLPAPSEPPEAVEGKASPR 755
+PGA G LRG G+ G E G GPP + PA +G Q +P P+
Sbjct: 553 LPGAPG--LRGLPGKDG--ETGAAGPPGPAGPAGERGEQGAPGPSGF------------- 595
Query: 756 EQGEEGAPTQPCCGLAGGPQAGPTQQPAARSGHPNGEIGQEGLGKLVPSPAPRELYLRAT 815
QG G P P G G Q P + A P GE G G +P L+
Sbjct: 596 -QGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPG-----ERGSPGAQGLQGP 649
Query: 816 RAV--APGGAHAAGASISPAGP 835
R + PG GAS PAGP
Sbjct: 650 RGLPGTPGTDGPKGAS-GPAGP 670
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 46.6 bits (109), Expect = 1e-04
Identities = 65/237 (27%), Positives = 78/237 (32%), Gaps = 50/237 (21%)
Query: 632 GSPSPSLCDGRNASHSR--LSKNRAQNGIQEAPRERVPAALTAVVGQP------------ 677
G P PS DG + L + G + P P L + G P
Sbjct: 1189 GQPGPSGADGEPGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQM 1248
Query: 678 -PIPPPLELRSVELRALLGPEVP-------GAVGAALRGG--GEVGIQEGGVRGPPTSRP 727
P PP GP+ P GAVG G GE G+ G GPP +
Sbjct: 1249 GPPGPPGPRGPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEG--GPPGPKG 1306
Query: 728 ARAQGAQESPL-----PAPSEPPEAVEGKASPREQGEEGAPTQPCCGLAGGPQAGPTQQP 782
R + + P P P PP K SP G G P GP P P
Sbjct: 1307 ERGEKGESGPSGAAGPPGPKGPPGDDGPKGSPGPVGFPGDP---------GPPGEP--GP 1355
Query: 783 AARSGHPNGEIGQEGLGKLVPSPAPRELYLRATRAVAPGGAHAAGASISPAGPEHRE 839
A + G P G+ G +G SP P T P G PAGPE R+
Sbjct: 1356 AGQDG-PPGDKGDDGEPGQTGSPGP-------TGEPGPSGPPGKRGPPGPAGPEGRQ 1404
Score = 40.4 bits (93), Expect = 0.008
Identities = 34/108 (31%), Positives = 41/108 (37%), Gaps = 9/108 (8%)
Query: 699 PGAVGAALRGGGEVGIQEGGVRGPP-TSRPARAQGAQESPLPAPSEPPEAVEGKASPREQ 757
PG G R G + E G+ GPP + P QGA P P+ + G P
Sbjct: 1395 PGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKP------GPDGLRGIPGP--V 1446
Query: 758 GEEGAPTQPCCGLAGGPQAGPTQQPAARSGHPNGEIGQEGLGKLVPSP 805
GE+G P P GP P P GE G GL L+ P
Sbjct: 1447 GEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPP 1494
Score = 38.9 bits (89), Expect = 0.022
Identities = 39/107 (36%), Positives = 45/107 (42%), Gaps = 12/107 (11%)
Query: 698 VPGAVGAALRGGGEVGIQEGGVRGPPTSR-PARAQGAQESP-LPAPSEPPEAVEGKASPR 755
+PG VGA G E G G P R PA A G P P P PP K +P
Sbjct: 1064 LPGPVGALGLKGNEGPPGPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAPG 1123
Query: 756 EQGEEGAPTQPCCGLAG-----GPQAGPTQQPAARSGHPNGEIGQEG 797
E+G +G + GL G GP AGP P GEIG+ G
Sbjct: 1124 EKGPQGPAGRD--GLQGPVGLPGP-AGPVGPPG--EDGDKGEIGEPG 1165
Score = 36.6 bits (83), Expect = 0.11
Identities = 103/401 (25%), Positives = 123/401 (30%), Gaps = 112/401 (27%)
Query: 60 PVQGPWTQAPA----PMAILQRPGCGGPPLAQAVGLAARDHQKARAFSAPR-----PLSC 110
P P + PA P+ I RPG GPP G +K A R P+
Sbjct: 1085 PAGSPGERGPAGAAGPIGIPGRPGPQGPP--GPAGEKGAPGEKGPQGPAGRDGLQGPVGL 1142
Query: 111 AGWVPARLQDCCRHHPCGCSFQKPQAGDDGAHGEIPGSCSCTLAPRQSYWHCHGSRHTRS 170
G P G + GD G GE PG GS+ +
Sbjct: 1143 PG-------------PAGPVGPPGEDGDKGEIGE-PGQ--------------KGSKGDKG 1174
Query: 171 --GYIGPQRQRSTSGQPSLRKSHGHWAAGTARGCFHQSLSTVQTCPRLVPQQPSPTELEP 228
G GP + GQP + G +G F Q PR P P P L+
Sbjct: 1175 EQGPPGPTGPQGPIGQPGPSGADGEPGPRGQQGLFGQK---GDEGPRGFPGPPGPVGLQG 1231
Query: 229 LGGQTLTVEATALDLGMPPVLSPPYDFVQPAGPQGSLATEAREMPCGHRGSTREDCVCSR 288
L G T D+G + PP P GP+G P G G+
Sbjct: 1232 LPGPPGEKGETG-DVGQ---MGPP----GPPGPRG---------PSGAPGAD-------- 1266
Query: 289 GALSPTAGVAGMGAAAERERGPGLTDEMQYTERDWEPPPQEAEQGAHGPAFQLVPVSQSD 348
G P G+ GA E+ PG E P E G GP
Sbjct: 1267 GPQGPPGGIGNPGAVGEKGE-PGEAGE----------PGLPGEGGPPGP----------- 1304
Query: 349 SIPLGLTLVKGQLLERLCSPMRGAALPGPGCKDPEERAALWPHAKPSP--------PPSQ 400
KG+ E+ S GAA P PG K P P P P PP +
Sbjct: 1305 ---------KGERGEKGESGPSGAAGP-PGPKGPPGDDG--PKGSPGPVGFPGDPGPPGE 1352
Query: 401 EARCHQGQAVTGWHQPCGEPVTCRLPVPTHSLGPSKAPRSR 441
Q G GEP P PT GPS P R
Sbjct: 1353 PGPAGQ-DGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKR 1392
Score = 35.0 bits (79), Expect = 0.32
Identities = 49/173 (28%), Positives = 61/173 (35%), Gaps = 33/173 (19%)
Query: 631 RGSPSPSLCDGRNASHSRLSKNRAQNGIQEAPRERVPAALTAVVGQPPIPPPLELRSVEL 690
RG P PS G + + G + P E P L G PP PP
Sbjct: 645 RGDPGPSGPPGPPGDDGERGDD-GEVGPRGLPGEPGPRGLLGPKG-PPGPP--------- 693
Query: 691 RALLGPEVPGAVGAALRGGGEVGIQEGGVRGPPTSRPARAQGAQESPLPAPSEPPEAVEG 750
GP PG G + G + + G GPP + GAQ P P + P
Sbjct: 694 ----GP--PGVTGMDGQPGPKGNVGPQGEPGPPGQQGN--PGAQGLPGPQGAIGP----- 740
Query: 751 KASPREQGEEGAPTQPCCGLAGGPQAGPTQQ--PAARSGH----PNGEIGQEG 797
P E+G G P P A GP P ++ P + G P G IG G
Sbjct: 741 ---PGEKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKGGQGPPGPQGPIGYPG 790
Score = 32.0 bits (71), Expect = 2.7
Identities = 33/112 (29%), Positives = 46/112 (41%), Gaps = 15/112 (13%)
Query: 696 PEVPGAVGAALRGGGEVGIQEGGVRGPPTSRPARAQGAQESPLPAPSEPPEAVEG-KASP 754
P +PGA G G E E G +GPP QG P P + + + G K +
Sbjct: 753 PGMPGADGPPGHPGKEGPPGEKGGQGPP-----GPQGPIGYPGPRGVKGADGIRGLKGTK 807
Query: 755 REQGEEGAP-TQPCCGLAG--------GPQAGPTQQPAARSGHPNGEIGQEG 797
E+GE+G P + G+ G GP+ + G PNG+ G G
Sbjct: 808 GEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGEDGPEGPKGRGGPNGDPGPLG 859
Score = 31.2 bits (69), Expect = 4.6
Identities = 59/198 (29%), Positives = 71/198 (35%), Gaps = 36/198 (18%)
Query: 631 RGSPSPSLCDGRNASHSRLSKNRAQNGIQEAPRERVPAALTAVVGQPPIPPPLELRSVEL 690
+G P P DG L + Q G + P VVG P P E +
Sbjct: 963 KGPPGPPGKDG-------LPGHPGQRGETGFQGKTGPPGPPGVVG--PQGPTGETGPMGE 1013
Query: 691 RALLGPEVP----GAVGAALRGG-----GEVGIQEGGVRGPPTSRPARAQGAQESPLPA- 740
R GP P G G A + G G G+ G GPP R P+ A
Sbjct: 1014 RGHPGPPGPPGEQGLPGLAGKEGTKGDPGPAGLP--GKDGPPGLRGFPGDRGLPGPVGAL 1071
Query: 741 ---PSEPPEAVEGKA-SPREQGEEGAPTQPCCGLAG--GPQAGPTQQPAARSGHPN---- 790
+E P G A SP E+G GA G+ G GPQ P PA G P
Sbjct: 1072 GLKGNEGPPGPPGPAGSPGERGPAGAAGP--IGIPGRPGPQGPPG--PAGEKGAPGEKGP 1127
Query: 791 -GEIGQEGLGKLVPSPAP 807
G G++GL V P P
Sbjct: 1128 QGPAGRDGLQGPVGLPGP 1145
Score = 31.2 bits (69), Expect = 4.6
Identities = 36/111 (32%), Positives = 46/111 (41%), Gaps = 14/111 (12%)
Query: 696 PEVPGAVGAALRGG--GEVGIQ-EGGVRGPP--TSRPARAQGAQESPLPAPSEPPEAVEG 750
P PG G A + G G+ G E G G P T P + + P P+ P
Sbjct: 1347 PGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKRGPPGPAGPEGRQGE 1406
Query: 751 KASPREQGEEGAPTQPCCGLAG--GPQAGPTQQ-PAARSGHPNGEIGQEGL 798
K + E G EG P G G GPQ P + P G P G +G++GL
Sbjct: 1407 KGAKGEAGLEGPP-----GKTGPIGPQGAPGKPGPDGLRGIP-GPVGEQGL 1451
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 45.8 bits (107), Expect = 2e-04
Identities = 71/234 (30%), Positives = 84/234 (35%), Gaps = 44/234 (18%)
Query: 614 PSSPSCRMTVGHHCYRSRGSPSPSLCDGRNASHSRLSKNRAQN-----GIQEAPRERVPA 668
P SP + VG GSP + G+ AQ GI +P +
Sbjct: 344 PGSPGAKGEVG-----PAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEM 398
Query: 669 ALTAVVGQPPIPPPLELRSVELRALLGPEVP-GAVGA-ALRGG-GEVGIQEGGVRGPPTS 725
+ G P L GP P GA GA LRGG GE G + G +G P
Sbjct: 399 GPAGIPGAPG-----------LMGARGPPGPAGANGAPGLRGGAGEPG--KNGAKGEPGP 445
Query: 726 RPARAQGAQESPLPAPSEPPEAVEGK-ASPREQGEEGAPTQPCCGLAGGPQAGPTQQPAA 784
R R + A E +GK SP E G G P G AG A + PA
Sbjct: 446 RGERGEAGIPGVPGAKGE-----DGKDGSPGEPGANGLP-----GAAGERGAPGFRGPAG 495
Query: 785 RSGHPN--GEIGQEGLGKLVPSPA-PRELYLRATRAVAPGGAHAAGASISPAGP 835
+G P G G+ G P PA PR R PGG G SP GP
Sbjct: 496 PNGIPGEKGPAGERG----APGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGP 545
Score = 38.5 bits (88), Expect = 0.029
Identities = 44/155 (28%), Positives = 55/155 (35%), Gaps = 29/155 (18%)
Query: 698 VPGAVGAALRGGGEVGIQEGGVRGPPTSRPARAQGAQESPLPAPSEPPEAVEGKASPREQ 757
VPG G G G G GPP S + + + P P PS P P +
Sbjct: 529 VPGGPGMRGMPGSPGGPGSDGKPGPPGS---QGESGRPGP-PGPSGPRGQPGVMGFPGPK 584
Query: 758 GEEGAPTQPCCGLAGGPQAGPTQQPAARSGHPNGEIGQEGLGKLVPSPAPRELYLRATRA 817
G +GAP + G GGP Q P + NGE G +G P P
Sbjct: 585 GNDGAPGKN--GERGGPGGPGPQGPPGK----NGETGPQG------PPGP---------- 622
Query: 818 VAPGGAHAAGASISPAGPEHREDLTETQRPCPRSG 852
PGG P GP+ + L T P +G
Sbjct: 623 TGPGGDK---GDTGPPGPQGLQGLPGTGGPPGENG 654
Score = 37.4 bits (85), Expect = 0.064
Identities = 44/137 (32%), Positives = 53/137 (38%), Gaps = 7/137 (5%)
Query: 698 VPGAVGAALRGGGEVGIQEGGVRGPPTSRPARAQ-GAQESP-LPAPSEPPEAVEGKASPR 755
+PG GA G E G G P + AR GA+ S P P PP SP
Sbjct: 289 LPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPG 348
Query: 756 EQGEEGAPTQPCCGLAGGPQAGPTQQPAARSGHPNGEIG----QEGLGKLVPSPAPRELY 811
+GE G P A G + P Q A + P G G G G++ P+ P
Sbjct: 349 AKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPG 408
Query: 812 LRATRAVAPGGAHAAGA 828
L R PG A A GA
Sbjct: 409 LMGARG-PPGPAGANGA 424
Score = 35.8 bits (81), Expect = 0.19
Identities = 46/163 (28%), Positives = 56/163 (34%), Gaps = 23/163 (14%)
Query: 696 PEVPGAVGAALRGGGEVGIQEGGVRGPP-TSRPARAQGAQESPLPAPSEPPEAVEG-KAS 753
P +PGA GA G + G GPP T+ + GA+ PA S G +
Sbjct: 311 PGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGE 370
Query: 754 PREQGEEGAPTQP-CCGLAGGP----QAGPT--------------QQPAARSGHP--NGE 792
P QG GA P G+ G P + GP PA +G P G
Sbjct: 371 PGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGG 430
Query: 793 IGQEGLGKLVPSPAPRELYLRATRAVAPGGAHAAGASISPAGP 835
G+ G P PR A PG G SP P
Sbjct: 431 AGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEP 473
Score = 33.9 bits (76), Expect = 0.71
Identities = 170/671 (25%), Positives = 216/671 (32%), Gaps = 143/671 (21%)
Query: 218 PQQPSPTELEPLGGQTLTVEATALDL----------GMPPVLSPPYDFVQPAGPQGSLAT 267
P P E P G Q + + + D+ G P PP P GP G+
Sbjct: 135 PGPPGICESCPTGPQNYSPQYDSYDVKSGVAVGGLAGYPGPAGPP----GPPGPPGTSGH 190
Query: 268 EAREMPCGHRGSTREDCVCSR-------GALSPTAGVAGMGAAAERERGPGLTDEMQYTE 320
G++G E GA+ P+ G AG + R PG E
Sbjct: 191 PGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPS-GPAGKDGESGRPGRPG--------E 241
Query: 321 RDWEPPPQEAEQGAHGPAFQLVPVSQSDSIPLGLTLVKGQLLERLCSPMRGA-ALPG--- 376
R PP G GPA +P G G+ E ++G LPG
Sbjct: 242 RGLPGPP-----GIKGPAG--IPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGENG 294
Query: 377 -PGCKDPEERAALWPHAKPSPPPSQEARCHQG-QAVTGWHQPCGEPVTCRLPVPTHS--- 431
PG P R A +P P + AR + G + G P G P T P +
Sbjct: 295 APGPMGP--RGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGE 352
Query: 432 LGPSKAPRSR--PVQLGGLVPFPPKFLGLIMGRGAGKVSPLGLRARVKIAGTPVSWPWLA 489
+GP+ +P S P Q G P P G G P G+ G+P +
Sbjct: 353 VGPAGSPGSNGAPGQRGE--PGPQGHAG-----AQGPPGPPGIN------GSPGGKGEMG 399
Query: 490 LAHVVGV-GLM-VDGAEHQAGL----GLRGGA--PGMESLRGQVPLSTPLVMQDGAGCWQ 541
A + G GLM G AG GLRGGA PG +G+ P + AG
Sbjct: 400 PAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGE---PGPRGERGEAGIPG 456
Query: 542 GPGRL--DGPVPIEVVFPTNILHSCAEETAS---EVPAGSSLVDEDAG--GTHGNYEDLV 594
PG DG N L A E + PAG + + + G G G
Sbjct: 457 VPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERG------ 510
Query: 595 VAWGQRRRSLINEVLVYQAPSSPSCRMTVGHHCYRSRGSPSPSLCDGRNASHSRLSKNRA 654
R E P P R GSP DG+ ++
Sbjct: 511 APGPAGPRGAAGEPGRDGVPGGPGMR--------GMPGSPGGPGSDGKPGPPG----SQG 558
Query: 655 QNGIQEAPRERVPAALTAVVGQPPIPPPLELRSVELRALLGPEVPGAVGAALRGGGEVGI 714
++G P P V+G P P + + GP PG G + G
Sbjct: 559 ESGRPGPPGPSGPRGQPGVMGFPG-PKGNDGAPGKNGERGGPGGPGPQGPPGKNG----- 612
Query: 715 QEGGVRGPP----------TSRPARAQGAQESPLPAPSEPPEAVEGKASPREQGEEGAPT 764
E G +GPP + P QG Q LP PP P +G+ GAP
Sbjct: 613 -ETGPQGPPGPTGPGGDKGDTGPPGPQGLQG--LPGTGGPPGENGKPGEPGPKGDAGAP- 668
Query: 765 QPCCGLAGGPQAGPTQQPAARSGHPNGEIGQEGLGKLVPSPAPRELYLRATRAVAPGGAH 824
G GG G P R P G G GL P P GG
Sbjct: 669 ----GAPGG--KGDAGAPGERG--PPGLAGAPGLRGGAGPPGPE------------GGKG 708
Query: 825 AAGASISPAGP 835
AAG P GP
Sbjct: 709 AAG----PPGP 715
Score = 32.3 bits (72), Expect = 2.1
Identities = 40/148 (27%), Positives = 49/148 (33%), Gaps = 11/148 (7%)
Query: 696 PEVPGAVGAALRGGGEVGIQEGGVRGPPTSRPARAQGAQESPLPAPSEPPEAVEGKASPR 755
P PG VG A + G G G P PA ++GA P + G A +
Sbjct: 1049 PGPPGPVGPAGKSGDRGESGPAGPAGAP--GPAGSRGAPGPQGPRGDKGETGERGAAGIK 1106
Query: 756 EQ----GEEGAPTQP----CCGLAGGPQAGPTQQPAARSGHPNGEIGQEGLGKLVPSPAP 807
G GAP P G G P + P SG P G+ G G + P P
Sbjct: 1107 GHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSG-PPGKDGTSGHPGPIGPPGP 1165
Query: 808 RELYLRATRAVAPGGAHAAGASISPAGP 835
R +PG G P P
Sbjct: 1166 RGNRGERGSEGSPGHPGQPGPPGPPGAP 1193
Score = 32.0 bits (71), Expect = 2.7
Identities = 32/106 (30%), Positives = 41/106 (38%), Gaps = 3/106 (2%)
Query: 695 GPEVP-GAVGAALRGGGEVGIQEGGVRG-PPTSRPARAQGAQ-ESPLPAPSEPPEAVEGK 751
GP P G +G G EGG G P + P + G + E+ P P+ P A
Sbjct: 759 GPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQN 818
Query: 752 ASPREQGEEGAPTQPCCGLAGGPQAGPTQQPAARSGHPNGEIGQEG 797
P +GE GAP + G G P A P G G+ G
Sbjct: 819 GEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERG 864
>gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens]
Length = 1712
Score = 45.8 bits (107), Expect = 2e-04
Identities = 71/236 (30%), Positives = 84/236 (35%), Gaps = 41/236 (17%)
Query: 655 QNGIQEAPRERVPAALTAVVGQPPIPPPLELRSVE----------LRALLGPEVPGAVGA 704
Q G Q AP ER P + G P I PP + L+ GP PG G+
Sbjct: 1246 QKGDQGAPGERGPPGSPGLQGFPGITPPSNISGAPGDKGAPGIFGLKGYRGP--PGPPGS 1303
Query: 705 ALRGGGEVGIQEGGVRGPP-TSRPARAQGAQESP----LPAPSEP-----------PEAV 748
A G + G G P T A G Q P LP P P
Sbjct: 1304 AALPGSKGDTGNPGAPGTPGTKGWAGDSGPQGRPGVFGLPGEKGPRGEQGFMGNTGPTGA 1363
Query: 749 EGKASPR-EQGEEGAPTQPCCGLAGGPQ-AGPTQQPAARSG--HPNGEIGQEGL-GKLVP 803
G P+ +G+ G P P G G P AG Q+ A + G P G G G G++ P
Sbjct: 1364 VGDRGPKGPKGDPGFPGAP--GTVGAPGIAGIPQKIAVQPGTVGPQGRRGPPGAPGEMGP 1421
Query: 804 SPAPRELYLRATRAVAPGGAHAAGASISPAGPEHREDLTET--QRPCPRSGALCRP 857
P E R APG A G A P R D Q P + GA RP
Sbjct: 1422 QGPPGEPGFRG----APGKAGPQGRGGVSAVPGFRGDEGPIGHQGPIGQEGAPGRP 1473
Score = 35.4 bits (80), Expect = 0.24
Identities = 38/126 (30%), Positives = 54/126 (42%), Gaps = 21/126 (16%)
Query: 675 GQPPIPPPLELRSVE-LRALLGPE-VPGAVGAALRGGGEVGIQEGGVRGPPTSRPARAQG 732
G P +P LR + L L G + PG+ G+ + G + G GPP R
Sbjct: 1182 GAPGLPGFPGLRGIRGLHGLPGTKGFPGSPGSDIHG-------DPGFPGPPGER---GDP 1231
Query: 733 AQESPLPAPSEPPEAVEGKASPREQGEEGAPTQPCCGLAGGPQAGPTQQPAARSGHPNGE 792
+ + LP P P + +P E+G G+P GL G P P P+ SG P G+
Sbjct: 1232 GEANTLPGPVGVPGQKGDQGAPGERGPPGSP-----GLQGFPGITP---PSNISGAP-GD 1282
Query: 793 IGQEGL 798
G G+
Sbjct: 1283 KGAPGI 1288
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 45.1 bits (105), Expect = 3e-04
Identities = 51/182 (28%), Positives = 64/182 (35%), Gaps = 31/182 (17%)
Query: 696 PEVPGAVGAALRGGGEVGIQEGGVRGPPTSRPARAQGA------QESPLPAPSEPPEAVE 749
P P A + +GG +G PP + P +G + +P+P + PP
Sbjct: 1057 PTTPAATLPSPKGGPATPSLKGAPT-PPAATPPSPKGGPATPSPKGAPMPPAATPPSPKG 1115
Query: 750 GKASPREQG----EEGAPTQPCCGLAGGPQAGPTQQPAARSGHPNGEIGQEGLGKLVPSP 805
G A+P +G P P GLA P G PAA P G GL P
Sbjct: 1116 GLATPPHKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKG-----GLATPPPKG 1170
Query: 806 APRELYLRATRAVAPGGAHAAGASISPAGPEHREDLTETQRPCPRSGALCRPQLLRDSPV 865
AP T A P A+ SP G T P P+ G L SP
Sbjct: 1171 AP------TTPAATPPSPKGGLATPSPKGAPTTPAATP---PSPKGG------LATPSPK 1215
Query: 866 GA 867
GA
Sbjct: 1216 GA 1217
Score = 34.7 bits (78), Expect = 0.41
Identities = 59/221 (26%), Positives = 76/221 (34%), Gaps = 34/221 (15%)
Query: 695 GPEVPGAVGAALRGGGEVGIQEGGVRGPPTSRPARAQGAQESPLPAPSEPPEAVEGKASP 754
G P V GG G PP + P +G+ +P P + P AV SP
Sbjct: 1285 GAPNPAVVTPPSPKGGPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVT-PPSP 1343
Query: 755 REQGEEGAPTQPCC--GLAGGP-----QAGPTQQPAARSGHPNGEI---GQEGLGKLVPS 804
+ G PT P GGP + GPT PAA H G G +PS
Sbjct: 1344 K-----GTPTLPATTPSSKGGPTTPSSKEGPT-PPAATPSHKGGPAMTPPSPKRGPAIPS 1397
Query: 805 P-----APRELYLR-----ATRAVAPGGAHAAGASISPAG--PEHREDLTETQRPCPRSG 852
P +P + L AT G A + ++P P + T P G
Sbjct: 1398 PKGDPTSPAVIPLSPKKAPATPVTREGAATPSKGDLTPPAVTPVSLKKAPATSAP---KG 1454
Query: 853 ALCRPQLLRDSPVGAARPVQHQELETRGNRQHACSSSEWKA 893
P D + A P + E +Q A SSS KA
Sbjct: 1455 GPATPSSKGDPTLPAVTPPSPK--EPPAPKQVATSSSPKKA 1493
Score = 33.9 bits (76), Expect = 0.71
Identities = 64/256 (25%), Positives = 78/256 (30%), Gaps = 40/256 (15%)
Query: 633 SPSPSLCDGRNASHSRLSKNRAQNGIQEAPRERVP-AALTAVVGQPPIPPPLELRSVELR 691
+P+P + + S K RA + P P A T PP P
Sbjct: 902 TPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKG--------- 952
Query: 692 ALLGPEVPGAVGAALRGGGEVGIQEGGVRGPPTSRPARAQGAQESPLPAPSEPPEAVEGK 751
GP P A +GG P T P A P P + PP G
Sbjct: 953 ---GPATPSPKWAPTPPAATPPSPKGG---PATPSPKGA------PTPPAATPPSPKGGP 1000
Query: 752 ASPREQGEEGAPTQPCC---GLAGGPQA-----GPTQQPAARSGHPNGEIGQEGLGKLVP 803
A+P +GAPT P G P A G + PAA P G L K P
Sbjct: 1001 ATP---SPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAP 1057
Query: 804 SPAPRELYLRATRAVAPGGAHAAGASISPAG-PEHREDLTETQRPCPRSGALCRPQLLRD 862
+ L + P GA PA P + T P GA P
Sbjct: 1058 TTPAATL---PSPKGGPATPSLKGAPTPPAATPPSPKGGPATPSP---KGAPMPPAATPP 1111
Query: 863 SPVGAARPVQHQELET 878
SP G H+ T
Sbjct: 1112 SPKGGLATPPHKGAPT 1127
Score = 33.5 bits (75), Expect = 0.92
Identities = 48/181 (26%), Positives = 61/181 (33%), Gaps = 17/181 (9%)
Query: 696 PEVPGAVGAALRGGGEVGIQEGGVRGPPTSRPARAQG-AQESPLPAPSEP----PEAVEG 750
P P A + +GG +G P + P+ G A SP AP+ P P G
Sbjct: 1172 PTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGG 1231
Query: 751 KASPREQGEEGAPTQPCCGLAGGPQAGPTQQPAARSGHPNGEIGQEGLGKLVPSPAPREL 810
A+P +GAPT P P+ GP P + P G L P
Sbjct: 1232 LATP---SPKGAPTTP-AATPPSPKGGPATPPPKGAPTPPAATPPSLKGGLATPPHKGAP 1287
Query: 811 YLRATRAVAPGGAHAA----GASISPAG-PEHREDLTETQRPCPRSGALCRPQLLRDSPV 865
+P G A GA PA P + T P GA P + SP
Sbjct: 1288 NPAVVTPPSPKGGPATSPPKGAPTPPAATPPSPKGSPGTP---PPKGAPTPPAVTPPSPK 1344
Query: 866 G 866
G
Sbjct: 1345 G 1345
Score = 30.4 bits (67), Expect = 7.8
Identities = 65/278 (23%), Positives = 87/278 (31%), Gaps = 46/278 (16%)
Query: 214 PRLVPQQPSPTELEPLGGQTLTVEATALDLGMPPVLSPPYDFVQPA--GPQGSLATEARE 271
P+ P P+ T P GG A PP +PP PA P+G+ A
Sbjct: 936 PKGAPTPPAATPPSPKGGPATPSPKWA---PTPPAATPPSPKGGPATPSPKGAPTPPAAT 992
Query: 272 MPCGHRGSTREDCVCSRGALSPTAGV--AGMGAAAERERGPGLTDEMQYTERDWEPPPQE 329
P G +GA +P A + G+ A G + T PP
Sbjct: 993 PPSPKGGPATPS---PKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAAT------PPSP 1043
Query: 330 AEQGAHGPAFQLVPVSQSDSIPLGLTLVKGQLLERLCSPMRGAALPG-PGCKDPEERAAL 388
A P + P + + ++P SP G A P G P
Sbjct: 1044 KGSPAATPLPKGAPTTPAATLP---------------SPKGGPATPSLKGAPTPPAATPP 1088
Query: 389 WPHAKPSPPPSQEARCHQGQAVTGWHQPCGEPVTCR--LPVPTHSLGPSKAPRSRPVQLG 446
P P+ P + A P P + + L P H P+ + P G
Sbjct: 1089 SPKGGPATPSPKGAPM----------PPAATPPSPKGGLATPPHKGAPTTPAATPPSPKG 1138
Query: 447 GLVPFPPKFLGLIMGRGAGKVSPLGLRARVKIAGTPVS 484
GL PPK G A SP G A G P +
Sbjct: 1139 GLATPPPK--GAPTTPAATPPSPKGGLATPPPKGAPTT 1174
>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
Length = 947
Score = 44.7 bits (104), Expect = 4e-04
Identities = 69/226 (30%), Positives = 85/226 (37%), Gaps = 40/226 (17%)
Query: 630 SRGSPSPSLCDGRNASHSRLS---KNRAQNGIQE-APRERVPAALTAVVGQ----PPIPP 681
SR P S+ G + K A +Q A E PAA A +G PP P
Sbjct: 87 SRTGPPASIRGGGGGAEKATPLAPKGAAPGAVQPVAGAEAAPAATLAALGGRRPGPPEEP 146
Query: 682 PLELRSVELRALLGPEVPGAVGAALRGGGEVGIQEGGVRGPPTSRPARAQGAQESPLPAP 741
P EL SV + LG P +G GGGE G GG G +E P P
Sbjct: 147 PRELESVPSK--LGE--PPPLGEGGGGGGEGGGAGGG------------SGEREGGAPQP 190
Query: 742 SEPPEAVEGKASPREQ----GEEGAPTQPCCGLAG-GPQAGPTQQPAARSGHPNGEIG-- 794
PP GK +Q G EGA P AG P G + +G +G G
Sbjct: 191 -PPPRGWRGKGVRAQQRGGSGGEGASPSPSSSSAGKTPGTGSRNSGSGVAGGGSGGGGSY 249
Query: 795 -QEGL--GKLVPSPAPRELYLRATRAVAPGGAHA--AGASISPAGP 835
+EG +L+ +E RA A A HA G S S + P
Sbjct: 250 WKEGCLQSELIQFHLKKE---RAAAAAAAAQMHAKNGGGSSSRSSP 292
Score = 37.0 bits (84), Expect = 0.084
Identities = 42/142 (29%), Positives = 52/142 (36%), Gaps = 25/142 (17%)
Query: 715 QEGGVRGPPTSRPARAQGAQESPLPA-PSEPPEAVEGKASPREQGEEGAPTQPCCGLAGG 773
Q+G G T PA +G A P P A G P G E AP L GG
Sbjct: 80 QQGNKTGSRTGPPASIRGGGGGAEKATPLAPKGAAPGAVQP-VAGAEAAPAATLAAL-GG 137
Query: 774 PQAGPTQQP-------AARSGHP---------NGEIGQEGLGK------LVPSPAPRELY 811
+ GP ++P ++ G P GE G G G P PR
Sbjct: 138 RRPGPPEEPPRELESVPSKLGEPPPLGEGGGGGGEGGGAGGGSGEREGGAPQPPPPRGWR 197
Query: 812 LRATRAVAPGGAHAAGASISPA 833
+ RA GG+ GAS SP+
Sbjct: 198 GKGVRAQQRGGSGGEGASPSPS 219
>gi|113416996 PREDICTED: ankyrin repeat domain 33B [Homo sapiens]
Length = 1006
Score = 44.7 bits (104), Expect = 4e-04
Identities = 66/280 (23%), Positives = 95/280 (33%), Gaps = 51/280 (18%)
Query: 634 PSPSLCDGRNASHSRLSKNRAQNGIQEAPRERVPAALTAVVGQPPIPPPLELRSVELRAL 693
P CDGR + + L ++ +A V +L ++ +PP P P
Sbjct: 180 PQSLTCDGRERTSAPLRRDLPPRLAHDASYPEVKGSLWQILTRPPPPRP----------- 228
Query: 694 LGPEVPGAVGAAL-RGGGEVGIQEGGVRGPPT--------SRPARAQGA-----QESPLP 739
PG G R G VG+ + G R P S P+R+ + +P P
Sbjct: 229 --SPAPGLTGRGQGRARGAVGL-DCGCRPRPCSFGQPDVGSAPSRSLRGCSLRFRNTPPP 285
Query: 740 APSEPPEAVEGKASPREQGEEGAPTQPCCGLAGGPQAGPTQQPAARSGHPNGEIGQEGLG 799
P + G+ RE G+ ++ C G P QQP A S G G G
Sbjct: 286 IPGSDQPSSHGRPRFRETGD----SEDCPPFRAGT---PPQQPTAPSSEWPGPQRSPGTG 338
Query: 800 KLVPSPAPRELYLRATR-AVAPGGAHAAGASISPAGPEHREDLTETQRPCPRSGALCRPQ 858
+P PR L A R +P +SP E + P LC +
Sbjct: 339 PRWTAPLPRPAPLPAKRPGDSPASKRPRPGGVSP----------EARDPPKGENPLCSSE 388
Query: 859 LLRDSPVGAARPVQHQELETRGNRQHACSSSEWKALGNGL 898
G P Q + + G + E KA G G+
Sbjct: 389 -----AAGETGPTQVRGPDALGGGRLQGKGREGKAPGEGV 423
Score = 36.2 bits (82), Expect = 0.14
Identities = 63/240 (26%), Positives = 86/240 (35%), Gaps = 53/240 (22%)
Query: 634 PSPSLCDGRNASHSRLSKNRAQNGI----QEAPRERVPAALTAVVGQPPIPPPLELRSVE 689
P P+ + S SK G+ ++ P+ P + G+ P ++R
Sbjct: 346 PRPAPLPAKRPGDSPASKRPRPGGVSPEARDPPKGENPLCSSEAAGETG---PTQVR--- 399
Query: 690 LRALLGPEVPGAVGAALRGGGEVGIQEG-GVR---------GPPTSRPARAQGAQESP-- 737
GP+ G G L+G G G G GV PP SRP QG + P
Sbjct: 400 -----GPDALG--GGRLQGKGREGKAPGEGVSPRPAPPRLGKPPRSRP--PQGLAQPPET 450
Query: 738 --------LPAPSEPPEAVEGKASPRE--QGEEGAPTQPCCGLAGGPQAGPTQQP-AARS 786
+P +E A G + E G+ GA L P A P QQP AAR
Sbjct: 451 FFFERSRLVPVSAELERAGHGFSGDAEARSGDLGARPASRSSLPSAP-APPAQQPQAARH 509
Query: 787 GHPNGEIGQEGLGKLVPSPAPRELYLRATRAVAPGGAHAAGASISPAGPEHREDLTETQR 846
G + G+ G + P T+ P GA PA E ED+ E+ R
Sbjct: 510 GAAGRDQGRRAAGAQLHDP--------TTQPSPPTGAQQ--VEEDPADYEEFEDILESAR 559
>gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Homo
sapiens]
Length = 305
Score = 44.3 bits (103), Expect = 5e-04
Identities = 33/127 (25%), Positives = 50/127 (39%), Gaps = 5/127 (3%)
Query: 656 NGIQEAPRERVPAALTAVVGQPPIPPPLELRSVELRALLGPEVPGAVGAALRGGGEVGIQ 715
+G++EAP + + A PP P L A + V V A+
Sbjct: 116 DGLEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLAPAPAPAP 175
Query: 716 EGGVRGPPTSRPARAQGAQESPLPAPS-----EPPEAVEGKASPREQGEEGAPTQPCCGL 770
P + PA A +P PAP+ P E+ E A+ ++G+E Q G+
Sbjct: 176 APAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPLADQLHSGI 235
Query: 771 AGGPQAG 777
+G P AG
Sbjct: 236 SGRPAAG 242
>gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Homo
sapiens]
Length = 305
Score = 44.3 bits (103), Expect = 5e-04
Identities = 33/127 (25%), Positives = 50/127 (39%), Gaps = 5/127 (3%)
Query: 656 NGIQEAPRERVPAALTAVVGQPPIPPPLELRSVELRALLGPEVPGAVGAALRGGGEVGIQ 715
+G++EAP + + A PP P L A + V V A+
Sbjct: 116 DGLEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLAPAPAPAP 175
Query: 716 EGGVRGPPTSRPARAQGAQESPLPAPS-----EPPEAVEGKASPREQGEEGAPTQPCCGL 770
P + PA A +P PAP+ P E+ E A+ ++G+E Q G+
Sbjct: 176 APAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPLADQLHSGI 235
Query: 771 AGGPQAG 777
+G P AG
Sbjct: 236 SGRPAAG 242
>gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo
sapiens]
Length = 316
Score = 44.3 bits (103), Expect = 5e-04
Identities = 33/127 (25%), Positives = 50/127 (39%), Gaps = 5/127 (3%)
Query: 656 NGIQEAPRERVPAALTAVVGQPPIPPPLELRSVELRALLGPEVPGAVGAALRGGGEVGIQ 715
+G++EAP + + A PP P L A + V V A+
Sbjct: 127 DGLEEAPEQLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLAPAPAPAP 186
Query: 716 EGGVRGPPTSRPARAQGAQESPLPAPS-----EPPEAVEGKASPREQGEEGAPTQPCCGL 770
P + PA A +P PAP+ P E+ E A+ ++G+E Q G+
Sbjct: 187 APAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPLADQLHSGI 246
Query: 771 AGGPQAG 777
+G P AG
Sbjct: 247 SGRPAAG 253
>gi|33286446 opioid growth factor receptor [Homo sapiens]
Length = 677
Score = 44.3 bits (103), Expect = 5e-04
Identities = 55/206 (26%), Positives = 68/206 (33%), Gaps = 30/206 (14%)
Query: 692 ALLGPEVPGAVGAALRGGGEVGIQEG--GVRGPPTSRPARAQGAQESPLPAPS-----EP 744
AL G P G G E G++E G GP P E+P P+P+ EP
Sbjct: 480 ALAGSPAPS--GHPKAGHSENGVEEDTEGRTGPKEGTPG---SPSETPGPSPAGPAGDEP 534
Query: 745 PEAVEGKASPREQGEEG-APTQPCCGLAGGPQAGPTQQPAARSGHPNGEIGQEGLGKLVP 803
E+ PR G G P + G AGP A S P+ G G
Sbjct: 535 AESPSETPGPRPAGPAGDEPAESPSETPGPRPAGPAGDEPAES--PSETPGPSPAGPTRD 592
Query: 804 SPAPRELYLRATRAVAPGGAHAAGAS--------ISPAGPEHREDLTETQRPCPRSGALC 855
PA R P G A + PAG E E +ET P P
Sbjct: 593 EPAESPSETPGPRPAGPAGDEPAESPSETPGPRPAGPAGDEPAESPSETPGPSPAGPT-- 650
Query: 856 RPQLLRDSPVGAARPVQHQELETRGN 881
RD P A + Q+ E +
Sbjct: 651 -----RDEPAKAGEAAELQDAEVESS 671
Score = 42.0 bits (97), Expect = 0.003
Identities = 46/185 (24%), Positives = 67/185 (36%), Gaps = 30/185 (16%)
Query: 632 GSPSPSLCDGRNASHSRLSKNRAQNGIQE------APRERVPAALTAVVGQPPIPPPLEL 685
GSP+PS A HS +NG++E P+E P + + G P P +
Sbjct: 483 GSPAPS--GHPKAGHS-------ENGVEEDTEGRTGPKEGTPGSPSETPGPSPAGPAGDE 533
Query: 686 RSVELRALLGPEVPGAVGAALRGGGEVGIQEGGVRGPPTSRPAR---AQGAQESPLPAPS 742
+ GP G G E GP + PA A+ E+P P+P+
Sbjct: 534 PAESPSETPGPRPAGPAG------DEPAESPSETPGPRPAGPAGDEPAESPSETPGPSPA 587
Query: 743 EPPEAVEGKASPREQGEEGAPTQPCCGLAGGPQAGPTQQPAARSGHPNGEIGQEGLGKLV 802
P + P E E +P P P++ P R P G+ E +
Sbjct: 588 GPT-----RDEPAESPSETPGPRPAGPAGDEPAESPSETPGPRPAGPAGDEPAESPSE-T 641
Query: 803 PSPAP 807
P P+P
Sbjct: 642 PGPSP 646
Score = 40.4 bits (93), Expect = 0.008
Identities = 57/202 (28%), Positives = 67/202 (33%), Gaps = 37/202 (18%)
Query: 676 QPPIPP-PLELRSVELRALLGPEVPGAVGAALRGGGEVGIQEGGVRGPPTSRPARAQ--- 731
QPP P P VE AL + G+ G EVG Q+ G P +P A+
Sbjct: 394 QPPTEPGPQSASEVEKIALNLEGCALSQGSLRTGTQEVGGQDPGEAVQPCRQPLGARVAD 453
Query: 732 ---------------------GAQESPL---PAPSEPPEAVEGKASPREQGEEGAPTQPC 767
GAQ L PAPS P+A + E E T P
Sbjct: 454 KVRKRRKVDEGAGDSAAVASGGAQTLALAGSPAPSGHPKAGHSENGVEEDTE--GRTGPK 511
Query: 768 CGLAGGPQAGPTQQPAARSGHPNGEIGQEGLGKLVPSPAPRELYLRATRAVAPGGAHAAG 827
G G P P PA +G E E G PA E + P A
Sbjct: 512 EGTPGSPSETPGPSPAGPAGDEPAESPSETPGPRPAGPAGDEPAESPSETPGPRPA---- 567
Query: 828 ASISPAGPEHREDLTETQRPCP 849
PAG E E +ET P P
Sbjct: 568 ---GPAGDEPAESPSETPGPSP 586
>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
Length = 1012
Score = 43.9 bits (102), Expect = 7e-04
Identities = 51/198 (25%), Positives = 70/198 (35%), Gaps = 24/198 (12%)
Query: 634 PSPSLCDGRNASHSRLSKNRAQNGIQEAPRERVPAALTAVVGQPPIPPPLELRSVELRAL 693
PSP + + S ++ +AQ +AP PA +A G P +P P
Sbjct: 162 PSPQDNESDSDSSAQQQMLQAQPPALQAPTGVTPAPSSAPPGTPQLPTP----------- 210
Query: 694 LGPEVPGAVGAALRGGGEVGIQEGGVRGPPTSRPARAQGAQESPLPAPSEPPEAVEGKAS 753
GP P A +G + P + P Q++P P PP
Sbjct: 211 -GP-TPSATAVPPQGSPTASQAPNQPQAP--TAPVPHTHIQQAPALHPQRPP-----SPH 261
Query: 754 PREQGEEGAPTQPCCGLAGGPQAGPTQQPAARSGHPNGEIGQEGLGKLVPSPAPRE---L 810
P P QP G AG P A QP P G + G L+ P P + L
Sbjct: 262 PPPHPSPHPPLQPLTGSAGQPSAPSHAQPPLHGQGPPGPHSLQA-GPLLQHPGPPQPFGL 320
Query: 811 YLRATRAVAPGGAHAAGA 828
+A++ AP G A A
Sbjct: 321 PPQASQGQAPLGTSPAAA 338
>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 43.9 bits (102), Expect = 7e-04
Identities = 51/198 (25%), Positives = 70/198 (35%), Gaps = 24/198 (12%)
Query: 634 PSPSLCDGRNASHSRLSKNRAQNGIQEAPRERVPAALTAVVGQPPIPPPLELRSVELRAL 693
PSP + + S ++ +AQ +AP PA +A G P +P P
Sbjct: 716 PSPQDNESDSDSSAQQQMLQAQPPALQAPTGVTPAPSSAPPGTPQLPTP----------- 764
Query: 694 LGPEVPGAVGAALRGGGEVGIQEGGVRGPPTSRPARAQGAQESPLPAPSEPPEAVEGKAS 753
GP P A +G + P + P Q++P P PP
Sbjct: 765 -GP-TPSATAVPPQGSPTASQAPNQPQAP--TAPVPHTHIQQAPALHPQRPP-----SPH 815
Query: 754 PREQGEEGAPTQPCCGLAGGPQAGPTQQPAARSGHPNGEIGQEGLGKLVPSPAPRE---L 810
P P QP G AG P A QP P G + G L+ P P + L
Sbjct: 816 PPPHPSPHPPLQPLTGSAGQPSAPSHAQPPLHGQGPPGPHSLQA-GPLLQHPGPPQPFGL 874
Query: 811 YLRATRAVAPGGAHAAGA 828
+A++ AP G A A
Sbjct: 875 PPQASQGQAPLGTSPAAA 892
>gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 43.9 bits (102), Expect = 7e-04
Identities = 51/198 (25%), Positives = 70/198 (35%), Gaps = 24/198 (12%)
Query: 634 PSPSLCDGRNASHSRLSKNRAQNGIQEAPRERVPAALTAVVGQPPIPPPLELRSVELRAL 693
PSP + + S ++ +AQ +AP PA +A G P +P P
Sbjct: 716 PSPQDNESDSDSSAQQQMLQAQPPALQAPTGVTPAPSSAPPGTPQLPTP----------- 764
Query: 694 LGPEVPGAVGAALRGGGEVGIQEGGVRGPPTSRPARAQGAQESPLPAPSEPPEAVEGKAS 753
GP P A +G + P + P Q++P P PP
Sbjct: 765 -GP-TPSATAVPPQGSPTASQAPNQPQAP--TAPVPHTHIQQAPALHPQRPP-----SPH 815
Query: 754 PREQGEEGAPTQPCCGLAGGPQAGPTQQPAARSGHPNGEIGQEGLGKLVPSPAPRE---L 810
P P QP G AG P A QP P G + G L+ P P + L
Sbjct: 816 PPPHPSPHPPLQPLTGSAGQPSAPSHAQPPLHGQGPPGPHSLQA-GPLLQHPGPPQPFGL 874
Query: 811 YLRATRAVAPGGAHAAGA 828
+A++ AP G A A
Sbjct: 875 PPQASQGQAPLGTSPAAA 892
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 43.9 bits (102), Expect = 7e-04
Identities = 55/208 (26%), Positives = 71/208 (34%), Gaps = 49/208 (23%)
Query: 688 VELRALLGPEVPGAVGAALRGGGEVGIQEGGVRGP-----PTSRPARAQGAQESPLPAPS 742
++ RA+L G++ + R V G P P PA A A P PAP
Sbjct: 77 IQQRAVLRVSYKGSI--SYRNAARVQPPRRGATPPAPPRAPRGAPAAAAAAAPPPTPAPP 134
Query: 743 EPPEAVEGKASPREQGEEGAPTQPCCGLAGGPQAGPTQQPAARSGHPNGEIGQEGLGKLV 802
PP V A R AP P GP Q G Q
Sbjct: 135 PPPAPVAAAAPAR------APRAAAAAATAPPSPGPAQP---------GPRAQRAAPLAA 179
Query: 803 PSPAPRELYLRATRAVAP--GGAHAAGASIS------------PAGPEHREDLTETQRPC 848
P PAP A AVAP G A +++ PA P+ ++ +P
Sbjct: 180 PPPAP-----AAPPAVAPPAGPRRAPPPAVAAREPPLPPPPQPPAPPQQQQPPPPQPQPP 234
Query: 849 PRSGALCRPQLLRDSPVGAARPVQHQEL 876
P GA+ GAARPV +E+
Sbjct: 235 PEGGAV--------RAGGAARPVSLREV 254
Score = 38.9 bits (89), Expect = 0.022
Identities = 70/252 (27%), Positives = 83/252 (32%), Gaps = 57/252 (22%)
Query: 661 APRERVPAALTAVVGQPPIPPPLELRSVELRALLGPEVPGAVGAALRGGGEVGIQEGGVR 720
APR AA A P PPP P P A A R
Sbjct: 114 APRGAPAAAAAAAPPPTPAPPP-------------PPAPVAAAAPARAPRAAA---AAAT 157
Query: 721 GPPTSRPA----RAQGAQ--ESPLPAPSEPPEAVEGKASPREQGEEGAPTQPCCGLAGGP 774
PP+ PA RAQ A +P PAP+ PP AV A PR AP P A P
Sbjct: 158 APPSPGPAQPGPRAQRAAPLAAPPPAPAAPP-AVAPPAGPRR-----AP--PPAVAAREP 209
Query: 775 QAGPTQQPAARSGHPNGEIGQEGLGKLVPSPAPRELYLRATRAVAP----------GGAH 824
P QP A Q P P P +RA A P GG+
Sbjct: 210 PLPPPPQPPAPPQQQQPPPPQ-------PQPPPEGGAVRAGGAARPVSLREVVRYLGGSG 262
Query: 825 AAGASISPA---GPEHREDLTETQRPCPRSGALCRPQLLRDS---PVGAARPVQHQELET 878
AG ++ G E + R GAL P+ R P +ARP + +
Sbjct: 263 GAGGRLTRGRVQGLLEEEAAARGRLERTRLGALALPRGDRPGRAPPAASARPSRSK---- 318
Query: 879 RGNRQHACSSSE 890
RG + E
Sbjct: 319 RGGEERVLEKEE 330
Score = 36.2 bits (82), Expect = 0.14
Identities = 38/131 (29%), Positives = 48/131 (36%), Gaps = 24/131 (18%)
Query: 658 IQEAPRERVPAALTAVVGQPPIPPPLELRSVELRA---LLGPEVPGAVGAALRGGGEVGI 714
+ A R P A A PP P P + RA P P A A G
Sbjct: 140 VAAAAPARAPRAAAAAATAPPSPGPAQPGPRAQRAAPLAAPPPAPAAPPAVAPPAG---- 195
Query: 715 QEGGVRGPPTSRPARAQGAQESPLPAPSEPPEAVEGKASPREQGEEGAPTQPCCGLAGGP 774
P P A A+E PLP P +PP A P++Q + P QP GG
Sbjct: 196 --------PRRAPPPAVAAREPPLPPPPQPP------APPQQQ--QPPPPQPQPPPEGGA 239
Query: 775 -QAGPTQQPAA 784
+AG +P +
Sbjct: 240 VRAGGAARPVS 250
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 43.5 bits (101), Expect = 9e-04
Identities = 36/137 (26%), Positives = 52/137 (37%), Gaps = 16/137 (11%)
Query: 699 PGAVGAALRGGGEVGIQEGGVRGPPTSRPARAQGAQESPLPAPSEPPEAVEGKASPREQ- 757
PG + A G G+ Q+ G PP+ P A+ + P P++PP G A P Q
Sbjct: 446 PGKIPAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQ--PGPAKPPPQQPGSAKPPSQQ 503
Query: 758 --GEEGAPTQPCCGLAGGPQAGPTQQPAARSGHPNGEIGQEGLGKLVPSPAPRELYLRAT 815
+ P QP Q G T+ P+ + G Q PSPA A
Sbjct: 504 PGSTKPPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQQ-------PSPAKPS----AQ 552
Query: 816 RAVAPGGAHAAGASISP 832
++ P +G + P
Sbjct: 553 QSTKPVSQTGSGKPLQP 569
Score = 40.0 bits (92), Expect = 0.010
Identities = 58/231 (25%), Positives = 86/231 (37%), Gaps = 25/231 (10%)
Query: 660 EAPRERVPAALTAVVGQP-PIPPPLELRSVELRALLGPEVPGAVGAALRGGGEVGIQEGG 718
E+ + +P+ + QP P PP + E ++ GP P A + L + Q+ G
Sbjct: 292 ESVKPSLPSPSKPPIQQPTPGKPPAQQPGHE-KSQPGPAKPPAQPSGLT---KPLAQQPG 347
Query: 719 VRGPPTSRPARAQGAQESPLPAPSEPPEAVEG--KASPREQGEEGAPTQPCCGLAGGPQA 776
PP P + + PL P++PP G K S + G + P G Q
Sbjct: 348 TVKPPVQPPGTTKPPAQ-PL-GPAKPPAQQTGSEKPSSEQPGPKALAQPPGVGKTPAQQP 405
Query: 777 GPTQQPAARSGHPNGEIGQEGLGKLVPSPAPRELYLRATRAVAPG----GAHAAG---AS 829
GP + P + G P Q GL +P P + T PG A AG S
Sbjct: 406 GPAKPPTQQVGTPKPLAQQPGLQSPAKAPGPTK-----TPVQQPGPGKIPAQQAGPGKTS 460
Query: 830 ISPAGP-EHREDLTETQRPCPRSGALCRPQLLRDSPVGAARPVQHQELETR 879
GP + L +P P+ +P G+A+P Q T+
Sbjct: 461 AQQTGPTKPPSQLPGPAKPPPQQPGPAKPP---PQQPGSAKPPSQQPGSTK 508
Score = 38.5 bits (88), Expect = 0.029
Identities = 39/148 (26%), Positives = 60/148 (40%), Gaps = 31/148 (20%)
Query: 708 GGGEVGIQEGGVRGPPTSRPARAQGAQESP--LPAPSEPPEAVEGKASPREQGEEGAPTQ 765
G G++ Q+ G P A+ G + P LP P++PP G A P P Q
Sbjct: 445 GPGKIPAQQAG----PGKTSAQQTGPTKPPSQLPGPAKPPPQQPGPAKP-------PPQQ 493
Query: 766 PCCGLAGGPQAGPTQQPAARSGHPNGEIGQEGLGKLVPSPAPRELYLRATRAVAPGGAHA 825
P G P+QQP + P Q G K P+P++ + PG A
Sbjct: 494 P------GSAKPPSQQPGSTKPPPQ----QPGPAK----PSPQQPGSTKPPSQQPGSAKP 539
Query: 826 AGASISPAGPEHREDLTETQRPCPRSGA 853
+ SPA P + ++ +P ++G+
Sbjct: 540 SAQQPSPAKPSAQ----QSTKPVSQTGS 563
Score = 30.4 bits (67), Expect = 7.8
Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 8/72 (11%)
Query: 721 GPPTSRPARAQGAQESPLPAPSEPPEAVEGKASPREQGEEGAPTQPCCGLAGGPQAGPTQ 780
G P GA PAPS+PP + + P+ G+ AP P + P T+
Sbjct: 950 GQPGPHSQSGPGAPMKQAPAPSQPPTS---QGPPKSTGQ--APPAPAKSI---PVKKETK 1001
Query: 781 QPAARSGHPNGE 792
PAA P E
Sbjct: 1002 APAAEKLEPKAE 1013
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 43.5 bits (101), Expect = 9e-04
Identities = 36/137 (26%), Positives = 52/137 (37%), Gaps = 16/137 (11%)
Query: 699 PGAVGAALRGGGEVGIQEGGVRGPPTSRPARAQGAQESPLPAPSEPPEAVEGKASPREQ- 757
PG + A G G+ Q+ G PP+ P A+ + P P++PP G A P Q
Sbjct: 446 PGKIPAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQ--PGPAKPPPQQPGSAKPPSQQ 503
Query: 758 --GEEGAPTQPCCGLAGGPQAGPTQQPAARSGHPNGEIGQEGLGKLVPSPAPRELYLRAT 815
+ P QP Q G T+ P+ + G Q PSPA A
Sbjct: 504 PGSTKPPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQQ-------PSPAKPS----AQ 552
Query: 816 RAVAPGGAHAAGASISP 832
++ P +G + P
Sbjct: 553 QSTKPVSQTGSGKPLQP 569
Score = 40.0 bits (92), Expect = 0.010
Identities = 58/231 (25%), Positives = 86/231 (37%), Gaps = 25/231 (10%)
Query: 660 EAPRERVPAALTAVVGQP-PIPPPLELRSVELRALLGPEVPGAVGAALRGGGEVGIQEGG 718
E+ + +P+ + QP P PP + E ++ GP P A + L + Q+ G
Sbjct: 292 ESVKPSLPSPSKPPIQQPTPGKPPAQQPGHE-KSQPGPAKPPAQPSGLT---KPLAQQPG 347
Query: 719 VRGPPTSRPARAQGAQESPLPAPSEPPEAVEG--KASPREQGEEGAPTQPCCGLAGGPQA 776
PP P + + PL P++PP G K S + G + P G Q
Sbjct: 348 TVKPPVQPPGTTKPPAQ-PL-GPAKPPAQQTGSEKPSSEQPGPKALAQPPGVGKTPAQQP 405
Query: 777 GPTQQPAARSGHPNGEIGQEGLGKLVPSPAPRELYLRATRAVAPG----GAHAAG---AS 829
GP + P + G P Q GL +P P + T PG A AG S
Sbjct: 406 GPAKPPTQQVGTPKPLAQQPGLQSPAKAPGPTK-----TPVQQPGPGKIPAQQAGPGKTS 460
Query: 830 ISPAGP-EHREDLTETQRPCPRSGALCRPQLLRDSPVGAARPVQHQELETR 879
GP + L +P P+ +P G+A+P Q T+
Sbjct: 461 AQQTGPTKPPSQLPGPAKPPPQQPGPAKPP---PQQPGSAKPPSQQPGSTK 508
Score = 38.5 bits (88), Expect = 0.029
Identities = 39/148 (26%), Positives = 60/148 (40%), Gaps = 31/148 (20%)
Query: 708 GGGEVGIQEGGVRGPPTSRPARAQGAQESP--LPAPSEPPEAVEGKASPREQGEEGAPTQ 765
G G++ Q+ G P A+ G + P LP P++PP G A P P Q
Sbjct: 445 GPGKIPAQQAG----PGKTSAQQTGPTKPPSQLPGPAKPPPQQPGPAKP-------PPQQ 493
Query: 766 PCCGLAGGPQAGPTQQPAARSGHPNGEIGQEGLGKLVPSPAPRELYLRATRAVAPGGAHA 825
P G P+QQP + P Q G K P+P++ + PG A
Sbjct: 494 P------GSAKPPSQQPGSTKPPPQ----QPGPAK----PSPQQPGSTKPPSQQPGSAKP 539
Query: 826 AGASISPAGPEHREDLTETQRPCPRSGA 853
+ SPA P + ++ +P ++G+
Sbjct: 540 SAQQPSPAKPSAQ----QSTKPVSQTGS 563
Score = 30.4 bits (67), Expect = 7.8
Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 8/72 (11%)
Query: 721 GPPTSRPARAQGAQESPLPAPSEPPEAVEGKASPREQGEEGAPTQPCCGLAGGPQAGPTQ 780
G P GA PAPS+PP + + P+ G+ AP P + P T+
Sbjct: 950 GQPGPHSQSGPGAPMKQAPAPSQPPTS---QGPPKSTGQ--APPAPAKSI---PVKKETK 1001
Query: 781 QPAARSGHPNGE 792
PAA P E
Sbjct: 1002 APAAEKLEPKAE 1013
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 43.5 bits (101), Expect = 9e-04
Identities = 63/284 (22%), Positives = 108/284 (38%), Gaps = 37/284 (13%)
Query: 629 RSRGSPSPSLCDGRNASHSRLSKNRAQNGIQEAPRERVPAALTAVVGQPPIPPPL-ELRS 687
RSR SP L DG + + SR S + + G+++ PR P+ + P P L +
Sbjct: 1438 RSRSGSSPGLRDG-SGTPSRHSLSGSSPGMKDIPR--TPSRGRSECDSSPEPKALPQTPR 1494
Query: 688 VELRALLGPEVPGA--VGAALRGGGEVGIQEGGVRGPPTSRPARAQGAQESPLPAPSEPP 745
R+ PE+ R G E + + V P + +R+ +QE + + P
Sbjct: 1495 PRSRSPSSPELNNKCLTPQRERSGSESSVDQKTVARTPLGQRSRSGSSQELDVKPSASPQ 1554
Query: 746 EAVEGKASPREQGEEGAPTQPCCGLAGGPQAGPTQQPA---ARSGH-----------PNG 791
E E +SP + + P + P+ + + +RSG P
Sbjct: 1555 ERSESDSSPDSKAKTRTPLRQRSRSGSSPEVDSKSRLSPRRSRSGSSPEVKDKPRAAPRA 1614
Query: 792 EIGQEGLGKLVPSPAPRELYLRATRAVAPGGAHAA--GASISPAGPEH------------ 837
+ G + + +PAPR L R+ + G + G+S + + PEH
Sbjct: 1615 QSGSDSSPE-PKAPAPRALPRRSRSGSSSKGRGPSPEGSSSTESSPEHPPKSRTARRGSR 1673
Query: 838 --REDLTETQRPCPRSGALCRPQLLRDSPVGAARPVQHQELETR 879
E T+++ P R + P+L R + + ETR
Sbjct: 1674 SSPEPKTKSRTPPRRRSSRSSPELTRKARLSRRSRSASSSPETR 1717
Score = 34.3 bits (77), Expect = 0.54
Identities = 58/268 (21%), Positives = 89/268 (33%), Gaps = 72/268 (26%)
Query: 598 GQRRRSLINEVLVYQAPSSPS-CRMTVGHHCYRSRGSPSPSLCDGRNASHSRLSKNRAQN 656
G+ L++ PS+PS RMT S +PSPS G+ S S L
Sbjct: 2395 GRTSPPLLDRARSRTPPSAPSQSRMT-------SERAPSPSSRMGQAPSQSLLPP----- 2442
Query: 657 GIQEAPRERVPAALT-----AVVGQPPIPPPLELRSVELRALLGPEVPGAVGAALRGGGE 711
Q+ PR VP+A + + P+ L S GAV G+
Sbjct: 2443 -AQDQPRSPVPSAFSDQSRCLIAQTTPVAGSQSLSS------------GAVATTTSSAGD 2489
Query: 712 ---------VGIQEGGVRGPPTS------------RPARAQGAQESPLPAPSEPPEAVEG 750
G+ V PP S +PA+ + + S + S +
Sbjct: 2490 HNGMLSVPAPGVPHSDVGEPPASTGAQQPSALAALQPAKERRSSSSSSSSSSSSSSSSSS 2549
Query: 751 KASPREQGEEGA-------PTQPCCGLAGGPQAGPTQQPAARSGHPNGEIGQEGLGKLVP 803
+S G + P QP L P P + A R G P P
Sbjct: 2550 SSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSPTPAPKEAVREGRP-------------P 2596
Query: 804 SPAPRELYLRATRAVAPGGAHAAGASIS 831
P P + R++ + + + ++ +S S
Sbjct: 2597 EPTPAKRKRRSSSSSSSSSSSSSSSSSS 2624
Score = 33.5 bits (75), Expect = 0.92
Identities = 61/224 (27%), Positives = 76/224 (33%), Gaps = 41/224 (18%)
Query: 637 SLCDG---RNASHSRLS--KNRAQN-----------GIQEAPRERVPAALTAVVGQPPIP 680
S+ DG R H R S +N AQ+ G P A L A + Q P P
Sbjct: 2155 SMMDGPGPRIPDHQRTSVPENHAQSRIALALTAISLGTARPPPSMSAAGLAARMSQVPAP 2214
Query: 681 PPLELRSVELRALLGPEVPGAVGAALRGGGEVGIQEGGVRGPPT------SRPARAQGAQ 734
PL A L +P A AA+ + PT SR A A
Sbjct: 2215 VPLMSLRTAPAANLASRIPAASAAAM------NLASARTPAIPTAVNLADSRTPAAAAAM 2268
Query: 735 ESPLPAPSEPPEAVEGKASPREQGEEGAPTQPCCGLAGG-PQAGPTQQPAARSGHPNGEI 793
P + P AV A PR PT P LAG A SG P
Sbjct: 2269 NLASPRTAVAPSAV-NLADPR------TPTAPAVNLAGARTPAALAALSLTGSGTPPTAA 2321
Query: 794 GQEGLGKLVPSPAPRELY-LRATRAVAP---GGAHAAGASISPA 833
+ +PA L R+ A AP G+ A A+++PA
Sbjct: 2322 NYPSSSRTPQAPASANLVGPRSAHATAPVNIAGSRTA-AALAPA 2364
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 43.1 bits (100), Expect = 0.001
Identities = 46/152 (30%), Positives = 56/152 (36%), Gaps = 17/152 (11%)
Query: 692 ALLGPEVPGAVGAALRGGGEVGIQEGGVRGPPTSRPARAQGAQESPLPAPSEPPEAVEGK 751
ALL P A G ++ VG P+ A A A P AP PP A
Sbjct: 224 ALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAA---PAAAPPPPPPAPATL 280
Query: 752 ASPREQGEEGAPTQ-----PCCGLAGGPQAGPTQQPAARSGHPNGEIGQEGLGKLVPSPA 806
A P G PT P G AG PA +G P G GQ G G +PA
Sbjct: 281 ARPPGH-PAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPA 339
Query: 807 P---RELYLRATRAVAPGGAHAAGASISPAGP 835
P E R +A P A +++ +GP
Sbjct: 340 PGVKAESPKRVVQAAPP-----AAQTLAASGP 366
Score = 34.3 bits (77), Expect = 0.54
Identities = 36/117 (30%), Positives = 41/117 (35%), Gaps = 21/117 (17%)
Query: 295 AGVAGMGAAAERERGPGLTDEMQYTERDWEPPPQEAEQGAHGPAFQLVPVSQSDSIPLGL 354
AG AG G AA E PG E PP A G GP P + +P G
Sbjct: 68 AGAAGAGPAAPAEGAPGAAPE--------PPPAGRARPGGGGPQRPGPPSPRRPLVPAGP 119
Query: 355 TLVKGQL------LERLCSPMRGAAL------PGP-GCKDPEERAALWPHAKPSPPP 398
+L C+P+ AA P P G P AAL A P P P
Sbjct: 120 APPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGP 176
Score = 33.5 bits (75), Expect = 0.92
Identities = 38/125 (30%), Positives = 43/125 (34%), Gaps = 30/125 (24%)
Query: 728 ARAQGAQESPLPAPSEPPEAVEGKASPREQGEEGAPTQPCCGLA----GGPQ-------- 775
A A GA + + + S A G A+P E AP P G A GGPQ
Sbjct: 52 AAAAGALGNHVVSGSPAGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPR 111
Query: 776 -----AGPTQQPAARSGHPNGEIGQEGLGKLVPSPAPRELYLRATRAVAPGGAHAAGASI 830
AGP A P G G +P P A AVA G A
Sbjct: 112 RPLVPAGPAPPAAKLRPPPEGSAGS-------CAPVP------AAAAVAAGPEPAPAGPA 158
Query: 831 SPAGP 835
PAGP
Sbjct: 159 KPAGP 163
Score = 33.1 bits (74), Expect = 1.2
Identities = 52/203 (25%), Positives = 58/203 (28%), Gaps = 47/203 (23%)
Query: 696 PEVPGAVGAALRGGGEVGIQEGGVRGPPTSRPARAQGAQESPLPAPSEPPEAVEGKASPR 755
PE P A G A GGG G Q G PP+ R P PPE G +P
Sbjct: 87 PEPPPA-GRARPGGG--GPQRPG---PPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPV 140
Query: 756 EQ------GEEGAPTQPC--------CGLAG-GPQAGPTQQPAARSGHPNG--------- 791
G E AP P AG GP GP P G P G
Sbjct: 141 PAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNG 200
Query: 792 ---------------EIGQEGLGKLVPSPAPRE--LYLRATRAVAPGGAHAAGASISPAG 834
+ G L+P P P ++ V A A PA
Sbjct: 201 SAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAA 260
Query: 835 PEHREDLTETQRPCPRSGALCRP 857
P P P L RP
Sbjct: 261 PAPAAPAAAPPPPPPAPATLARP 283
>gi|146219832 myosin light chain kinase 3 [Homo sapiens]
Length = 819
Score = 43.1 bits (100), Expect = 0.001
Identities = 62/259 (23%), Positives = 91/259 (35%), Gaps = 29/259 (11%)
Query: 647 SRLSKNRAQNGIQEAPRERVPAALTAVVGQPPIPPPLELRSVEL---RALLGPEVPGAVG 703
S L + AQ + + VP A G P+P +E ++ E G E+ A G
Sbjct: 210 SGLGADPAQAVVSPGQGDGVPGPAQAFPGHLPLPTKVEAKAPETPSENLRTGLELAPAPG 269
Query: 704 AALRGGGEVGIQEGGVRGPPTSRP---ARAQGAQESPLPAPSEP-PEAVEGKASPREQGE 759
+ + G +G +SRP +G + +P P P P P + +A G
Sbjct: 270 RVNVVSPSLEVAPGAGQGASSSRPDPEPLEEGTRLTPGPGPQCPGPPGLPAQARATHSGG 329
Query: 760 EGAP----------TQPCCGLAGGPQAGPTQQPAARSGHPNGEIGQEGLGKLVPSPA--P 807
E P T + G GPT A + G+ G G G+ + +P P
Sbjct: 330 ETPPRISIHIQEMDTPGEMLMTGRGSLGPTLTTEAPAAAQPGKQGPPGTGRCLQAPGTEP 389
Query: 808 RELYLRATRAV-------APGGAHAAGASISPAGPEHREDLTETQRPCPRSGALCRPQLL 860
E R + +PGG A + A P R L + GAL L
Sbjct: 390 GEQTPEGARELSPLQESSSPGGVKAEEEQRAGAEPGTRPSLARSDDNDHEVGAL---GLQ 446
Query: 861 RDSPVGAARPVQHQELETR 879
+ GA P Q+ R
Sbjct: 447 QGKSPGAGNPEPEQDCAAR 465
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 42.7 bits (99), Expect = 0.002
Identities = 53/149 (35%), Positives = 61/149 (40%), Gaps = 29/149 (19%)
Query: 699 PGAVGAALRGGGEVGIQEGGVRGPP-TSRPARAQGAQESPLPAPSEPPEAVEGKASPREQ 757
PGA GA R G + E G GPP + P QG PA PE + G P
Sbjct: 1377 PGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQG------PAGKPGPEGLRGIPGP--V 1428
Query: 758 GEEGAPTQPCCGLAG--GPQA--GPTQQPAARSGHP--NGEIGQEGLGKLVPSPAPRELY 811
GE+G P G AG GP GP P + G P GE G GL L+ P E
Sbjct: 1429 GEQGLP-----GAAGQDGPPGPMGPPGLPGLK-GDPGSKGEKGHPGLIGLIGPPG--EQG 1480
Query: 812 LRATRAVAPG-----GAHAAGASISPAGP 835
+ R + PG GA G PAGP
Sbjct: 1481 EKGDRGL-PGTQGSPGAKGDGGIPGPAGP 1508
Score = 38.5 bits (88), Expect = 0.029
Identities = 38/109 (34%), Positives = 44/109 (40%), Gaps = 16/109 (14%)
Query: 698 VPGAVGAALRGGGEVGIQEGGVRGPPTSRPARAQGAQESPL-----PAPSEPPEAVEGKA 752
+PGA GA GGE G Q G GP S R P+ P P PP K
Sbjct: 1046 LPGAQGAPGLKGGE-GPQ--GPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKG 1102
Query: 753 SPREQGEEGAP----TQPCCGLAGGPQAGPTQQPAARSGHPNGEIGQEG 797
+P E+G +G Q GL G AGP P GEIG+ G
Sbjct: 1103 APGEKGPQGPAGRDGVQGPVGLPG--PAGPAGSPG--EDGDKGEIGEPG 1147
Score = 36.6 bits (83), Expect = 0.11
Identities = 45/128 (35%), Positives = 53/128 (41%), Gaps = 35/128 (27%)
Query: 691 RALLGPE-VPGAVGAALRGG--------GEVGIQEGGVRGPPTSRPARAQGAQESPLPAP 741
R LLGP PGA G G G +G Q G GPP G Q +P P
Sbjct: 663 RGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQ--GEPGPP--------GQQGNPGPQG 712
Query: 742 SEPPEAVEGKASPREQGEEGAPTQPCCGLAGGPQA-GPTQQPAARSGHPNGEIGQEGLGK 800
P+ G P E+G +G P GLAG P A GP GHP G+ GQ G
Sbjct: 713 LPGPQGPIGP--PGEKGPQGKP-----GLAGLPGADGP-------PGHP-GKEGQSGEKG 757
Query: 801 LVPSPAPR 808
+ P P+
Sbjct: 758 ALGPPGPQ 765
Score = 33.1 bits (74), Expect = 1.2
Identities = 39/118 (33%), Positives = 48/118 (40%), Gaps = 27/118 (22%)
Query: 699 PGAVGAALRGG--------GEVGIQEGGVRGPPTSR-PARAQGAQESPLPA--------P 741
PG G A GG GE G G GPP ++ P G + +P P P
Sbjct: 1275 PGPPGEAGVGGPKGERGEKGEAG--PPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPP 1332
Query: 742 SEP-PEAVEGKASPR-EQGEEGAPTQPCCGLAGGPQAGPTQQPAARSGHPNGEIGQEG 797
EP P +G + E G+ G P P G +G +AGP P R P G G EG
Sbjct: 1333 GEPGPAGQDGVGGDKGEDGDPGQPGPP--GPSG--EAGPPGPPGKRG--PPGAAGAEG 1384
Score = 32.0 bits (71), Expect = 2.7
Identities = 39/134 (29%), Positives = 50/134 (37%), Gaps = 27/134 (20%)
Query: 675 GQPPIPPPLELRSVELRALLGPEVPGAVGAALRGGGEVGIQEGGVRGPPTSRPARAQGAQ 734
G P P P+ L+ + P PG G G+VG G GPP R +
Sbjct: 1201 GFPGPPGPIGLQGL-------PGPPGEKGE----NGDVGPM--GPPGPPGPRGPQGPNGA 1247
Query: 735 ESPLPAPSEPPEAVEGKASPREQGEEGAPTQPCCGLAGGP--------QAGP---TQQPA 783
+ P P +V G E GE G P P GGP +AGP P
Sbjct: 1248 DGPQGPPGSVG-SVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPG 1306
Query: 784 ARSGHPNGEIGQEG 797
A+ P G+ G +G
Sbjct: 1307 AKG--PPGDDGPKG 1318
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 42.7 bits (99), Expect = 0.002
Identities = 53/149 (35%), Positives = 61/149 (40%), Gaps = 29/149 (19%)
Query: 699 PGAVGAALRGGGEVGIQEGGVRGPP-TSRPARAQGAQESPLPAPSEPPEAVEGKASPREQ 757
PGA GA R G + E G GPP + P QG PA PE + G P
Sbjct: 1326 PGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQG------PAGKPGPEGLRGIPGP--V 1377
Query: 758 GEEGAPTQPCCGLAG--GPQA--GPTQQPAARSGHP--NGEIGQEGLGKLVPSPAPRELY 811
GE+G P G AG GP GP P + G P GE G GL L+ P E
Sbjct: 1378 GEQGLP-----GAAGQDGPPGPMGPPGLPGLK-GDPGSKGEKGHPGLIGLIGPPG--EQG 1429
Query: 812 LRATRAVAPG-----GAHAAGASISPAGP 835
+ R + PG GA G PAGP
Sbjct: 1430 EKGDRGL-PGTQGSPGAKGDGGIPGPAGP 1457
Score = 38.5 bits (88), Expect = 0.029
Identities = 38/109 (34%), Positives = 44/109 (40%), Gaps = 16/109 (14%)
Query: 698 VPGAVGAALRGGGEVGIQEGGVRGPPTSRPARAQGAQESPL-----PAPSEPPEAVEGKA 752
+PGA GA GGE G Q G GP S R P+ P P PP K
Sbjct: 995 LPGAQGAPGLKGGE-GPQ--GPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKG 1051
Query: 753 SPREQGEEGAP----TQPCCGLAGGPQAGPTQQPAARSGHPNGEIGQEG 797
+P E+G +G Q GL G AGP P GEIG+ G
Sbjct: 1052 APGEKGPQGPAGRDGVQGPVGLPG--PAGPAGSPG--EDGDKGEIGEPG 1096
Score = 36.6 bits (83), Expect = 0.11
Identities = 45/128 (35%), Positives = 53/128 (41%), Gaps = 35/128 (27%)
Query: 691 RALLGPE-VPGAVGAALRGG--------GEVGIQEGGVRGPPTSRPARAQGAQESPLPAP 741
R LLGP PGA G G G +G Q G GPP G Q +P P
Sbjct: 612 RGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQ--GEPGPP--------GQQGNPGPQG 661
Query: 742 SEPPEAVEGKASPREQGEEGAPTQPCCGLAGGPQA-GPTQQPAARSGHPNGEIGQEGLGK 800
P+ G P E+G +G P GLAG P A GP GHP G+ GQ G
Sbjct: 662 LPGPQGPIGP--PGEKGPQGKP-----GLAGLPGADGP-------PGHP-GKEGQSGEKG 706
Query: 801 LVPSPAPR 808
+ P P+
Sbjct: 707 ALGPPGPQ 714
Score = 33.1 bits (74), Expect = 1.2
Identities = 39/118 (33%), Positives = 48/118 (40%), Gaps = 27/118 (22%)
Query: 699 PGAVGAALRGG--------GEVGIQEGGVRGPPTSR-PARAQGAQESPLPA--------P 741
PG G A GG GE G G GPP ++ P G + +P P P
Sbjct: 1224 PGPPGEAGVGGPKGERGEKGEAG--PPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPP 1281
Query: 742 SEP-PEAVEGKASPR-EQGEEGAPTQPCCGLAGGPQAGPTQQPAARSGHPNGEIGQEG 797
EP P +G + E G+ G P P G +G +AGP P R P G G EG
Sbjct: 1282 GEPGPAGQDGVGGDKGEDGDPGQPGPP--GPSG--EAGPPGPPGKRG--PPGAAGAEG 1333
Score = 32.0 bits (71), Expect = 2.7
Identities = 39/134 (29%), Positives = 50/134 (37%), Gaps = 27/134 (20%)
Query: 675 GQPPIPPPLELRSVELRALLGPEVPGAVGAALRGGGEVGIQEGGVRGPPTSRPARAQGAQ 734
G P P P+ L+ + P PG G G+VG G GPP R +
Sbjct: 1150 GFPGPPGPIGLQGL-------PGPPGEKGE----NGDVGPM--GPPGPPGPRGPQGPNGA 1196
Query: 735 ESPLPAPSEPPEAVEGKASPREQGEEGAPTQPCCGLAGGP--------QAGP---TQQPA 783
+ P P +V G E GE G P P GGP +AGP P
Sbjct: 1197 DGPQGPPGSVG-SVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPG 1255
Query: 784 ARSGHPNGEIGQEG 797
A+ P G+ G +G
Sbjct: 1256 AKG--PPGDDGPKG 1267
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 42.7 bits (99), Expect = 0.002
Identities = 53/149 (35%), Positives = 61/149 (40%), Gaps = 29/149 (19%)
Query: 699 PGAVGAALRGGGEVGIQEGGVRGPP-TSRPARAQGAQESPLPAPSEPPEAVEGKASPREQ 757
PGA GA R G + E G GPP + P QG PA PE + G P
Sbjct: 1365 PGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQG------PAGKPGPEGLRGIPGP--V 1416
Query: 758 GEEGAPTQPCCGLAG--GPQA--GPTQQPAARSGHP--NGEIGQEGLGKLVPSPAPRELY 811
GE+G P G AG GP GP P + G P GE G GL L+ P E
Sbjct: 1417 GEQGLP-----GAAGQDGPPGPMGPPGLPGLK-GDPGSKGEKGHPGLIGLIGPPG--EQG 1468
Query: 812 LRATRAVAPG-----GAHAAGASISPAGP 835
+ R + PG GA G PAGP
Sbjct: 1469 EKGDRGL-PGTQGSPGAKGDGGIPGPAGP 1496
Score = 38.5 bits (88), Expect = 0.029
Identities = 38/109 (34%), Positives = 44/109 (40%), Gaps = 16/109 (14%)
Query: 698 VPGAVGAALRGGGEVGIQEGGVRGPPTSRPARAQGAQESPL-----PAPSEPPEAVEGKA 752
+PGA GA GGE G Q G GP S R P+ P P PP K
Sbjct: 1034 LPGAQGAPGLKGGE-GPQ--GPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKG 1090
Query: 753 SPREQGEEGAP----TQPCCGLAGGPQAGPTQQPAARSGHPNGEIGQEG 797
+P E+G +G Q GL G AGP P GEIG+ G
Sbjct: 1091 APGEKGPQGPAGRDGVQGPVGLPG--PAGPAGSPG--EDGDKGEIGEPG 1135
Score = 36.6 bits (83), Expect = 0.11
Identities = 45/128 (35%), Positives = 53/128 (41%), Gaps = 35/128 (27%)
Query: 691 RALLGPE-VPGAVGAALRGG--------GEVGIQEGGVRGPPTSRPARAQGAQESPLPAP 741
R LLGP PGA G G G +G Q G GPP G Q +P P
Sbjct: 651 RGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQ--GEPGPP--------GQQGNPGPQG 700
Query: 742 SEPPEAVEGKASPREQGEEGAPTQPCCGLAGGPQA-GPTQQPAARSGHPNGEIGQEGLGK 800
P+ G P E+G +G P GLAG P A GP GHP G+ GQ G
Sbjct: 701 LPGPQGPIGP--PGEKGPQGKP-----GLAGLPGADGP-------PGHP-GKEGQSGEKG 745
Query: 801 LVPSPAPR 808
+ P P+
Sbjct: 746 ALGPPGPQ 753
Score = 33.1 bits (74), Expect = 1.2
Identities = 39/118 (33%), Positives = 48/118 (40%), Gaps = 27/118 (22%)
Query: 699 PGAVGAALRGG--------GEVGIQEGGVRGPPTSR-PARAQGAQESPLPA--------P 741
PG G A GG GE G G GPP ++ P G + +P P P
Sbjct: 1263 PGPPGEAGVGGPKGERGEKGEAG--PPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPP 1320
Query: 742 SEP-PEAVEGKASPR-EQGEEGAPTQPCCGLAGGPQAGPTQQPAARSGHPNGEIGQEG 797
EP P +G + E G+ G P P G +G +AGP P R P G G EG
Sbjct: 1321 GEPGPAGQDGVGGDKGEDGDPGQPGPP--GPSG--EAGPPGPPGKRG--PPGAAGAEG 1372
Score = 32.0 bits (71), Expect = 2.7
Identities = 39/134 (29%), Positives = 50/134 (37%), Gaps = 27/134 (20%)
Query: 675 GQPPIPPPLELRSVELRALLGPEVPGAVGAALRGGGEVGIQEGGVRGPPTSRPARAQGAQ 734
G P P P+ L+ + P PG G G+VG G GPP R +
Sbjct: 1189 GFPGPPGPIGLQGL-------PGPPGEKGE----NGDVGPM--GPPGPPGPRGPQGPNGA 1235
Query: 735 ESPLPAPSEPPEAVEGKASPREQGEEGAPTQPCCGLAGGP--------QAGP---TQQPA 783
+ P P +V G E GE G P P GGP +AGP P
Sbjct: 1236 DGPQGPPGSVG-SVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPG 1294
Query: 784 ARSGHPNGEIGQEG 797
A+ P G+ G +G
Sbjct: 1295 AKG--PPGDDGPKG 1306
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.134 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,153,756
Number of Sequences: 37866
Number of extensions: 3078441
Number of successful extensions: 16686
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 843
Number of HSP's that attempted gapping in prelim test: 13660
Number of HSP's gapped (non-prelim): 3454
length of query: 909
length of database: 18,247,518
effective HSP length: 111
effective length of query: 798
effective length of database: 14,044,392
effective search space: 11207424816
effective search space used: 11207424816
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.