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Search of human proteins with 239744733
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744733 PREDICTED: hypothetical protein XP_002343257 [Homo
sapiens]
(659 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239744733 PREDICTED: hypothetical protein XP_002343257 [Homo ... 1342 0.0
gi|239756788 PREDICTED: hypothetical protein [Homo sapiens] 119 1e-26
gi|239751282 PREDICTED: hypothetical protein XP_002347785 [Homo ... 119 1e-26
gi|239745777 PREDICTED: hypothetical protein XP_002343552 [Homo ... 119 1e-26
gi|239753839 PREDICTED: hypothetical protein [Homo sapiens] 40 0.007
gi|53692189 adipocyte enhancer binding protein 1 precursor [Homo... 39 0.012
gi|95091988 Rho GTPase activating protein 6 isoform 3 [Homo sapi... 38 0.034
gi|95091875 Rho GTPase activating protein 6 isoform 1 [Homo sapi... 38 0.034
gi|19913398 smoothelin isoform a [Homo sapiens] 37 0.076
gi|145309320 forkhead box Q1 [Homo sapiens] 36 0.099
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 36 0.099
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 36 0.099
gi|239752594 PREDICTED: hypothetical protein, partial [Homo sapi... 36 0.099
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 36 0.099
gi|39812378 RAN binding protein 9 [Homo sapiens] 36 0.13
gi|27262645 ataxin 2 related protein isoform B [Homo sapiens] 36 0.13
gi|27262653 ataxin 2 related protein isoform E [Homo sapiens] 36 0.13
gi|27262649 ataxin 2 related protein isoform C [Homo sapiens] 36 0.13
gi|27262647 ataxin 2 related protein isoform A [Homo sapiens] 36 0.13
gi|27262651 ataxin 2 related protein isoform D [Homo sapiens] 36 0.13
gi|153285461 fibroblast growth factor 2 [Homo sapiens] 35 0.17
gi|239746104 PREDICTED: hypothetical protein XP_002344198 [Homo ... 35 0.17
gi|113411427 PREDICTED: hypothetical protein [Homo sapiens] 35 0.17
gi|122937496 WAS/WASL interacting protein family, member 3 [Homo... 35 0.17
gi|182507165 thymus expressed gene 3-like [Homo sapiens] 35 0.17
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 35 0.22
gi|169209134 PREDICTED: hypothetical protein [Homo sapiens] 35 0.22
gi|239748716 PREDICTED: hypothetical protein XP_002346782 [Homo ... 35 0.22
gi|239742745 PREDICTED: hypothetical protein XP_002342616 [Homo ... 35 0.22
gi|169161400 PREDICTED: hypothetical protein [Homo sapiens] 35 0.22
>gi|239744733 PREDICTED: hypothetical protein XP_002343257 [Homo
sapiens]
Length = 659
Score = 1342 bits (3472), Expect = 0.0
Identities = 659/659 (100%), Positives = 659/659 (100%)
Query: 1 MFWSGGKRAGRDPSPSAPGIGQVRNSESRGAPYLRSRCTGWTPTSQTRPSGRPADACAAD 60
MFWSGGKRAGRDPSPSAPGIGQVRNSESRGAPYLRSRCTGWTPTSQTRPSGRPADACAAD
Sbjct: 1 MFWSGGKRAGRDPSPSAPGIGQVRNSESRGAPYLRSRCTGWTPTSQTRPSGRPADACAAD 60
Query: 61 SGRRRASGRLGRSAVSSGVLWTDSPEAGPGRIRPGGVERGFGEPAKGEGFRGPVGRLIKT 120
SGRRRASGRLGRSAVSSGVLWTDSPEAGPGRIRPGGVERGFGEPAKGEGFRGPVGRLIKT
Sbjct: 61 SGRRRASGRLGRSAVSSGVLWTDSPEAGPGRIRPGGVERGFGEPAKGEGFRGPVGRLIKT 120
Query: 121 WASWSPARPRPDGSIKASLPARLSPRPLGSGASLWPFVCPRFGAGREGASPVSLLERWSC 180
WASWSPARPRPDGSIKASLPARLSPRPLGSGASLWPFVCPRFGAGREGASPVSLLERWSC
Sbjct: 121 WASWSPARPRPDGSIKASLPARLSPRPLGSGASLWPFVCPRFGAGREGASPVSLLERWSC 180
Query: 181 SRMWRVGLGVAAKAALSVSSCLALMVVRGPRRLVPEFCSSFSLLAVSLSDEVELSVSLGS 240
SRMWRVGLGVAAKAALSVSSCLALMVVRGPRRLVPEFCSSFSLLAVSLSDEVELSVSLGS
Sbjct: 181 SRMWRVGLGVAAKAALSVSSCLALMVVRGPRRLVPEFCSSFSLLAVSLSDEVELSVSLGS 240
Query: 241 SCSASWRSGDKLRSVQDDTAGGRIGKGTAASATARRLFSPVAGSRRPKLRPAQATASPAG 300
SCSASWRSGDKLRSVQDDTAGGRIGKGTAASATARRLFSPVAGSRRPKLRPAQATASPAG
Sbjct: 241 SCSASWRSGDKLRSVQDDTAGGRIGKGTAASATARRLFSPVAGSRRPKLRPAQATASPAG 300
Query: 301 FPPKPATAPPPGTRCPPTLSRRGWAFGGALLSPLRASQLVPGPQLMSFQCIKKLPGAQVT 360
FPPKPATAPPPGTRCPPTLSRRGWAFGGALLSPLRASQLVPGPQLMSFQCIKKLPGAQVT
Sbjct: 301 FPPKPATAPPPGTRCPPTLSRRGWAFGGALLSPLRASQLVPGPQLMSFQCIKKLPGAQVT 360
Query: 361 HKGELCASKLGEEGNLEKAPELEEELPGADELQAQHRQHTGGQVVVFAHELVLVDDVELL 420
HKGELCASKLGEEGNLEKAPELEEELPGADELQAQHRQHTGGQVVVFAHELVLVDDVELL
Sbjct: 361 HKGELCASKLGEEGNLEKAPELEEELPGADELQAQHRQHTGGQVVVFAHELVLVDDVELL 420
Query: 421 AGGQLLVTHHAGETVEVKDFAPGLAHQVAGRDALRAAGAFRAKAPETVIFAVELALAREA 480
AGGQLLVTHHAGETVEVKDFAPGLAHQVAGRDALRAAGAFRAKAPETVIFAVELALAREA
Sbjct: 421 AGGQLLVTHHAGETVEVKDFAPGLAHQVAGRDALRAAGAFRAKAPETVIFAVELALAREA 480
Query: 481 LLREVGFALAALNTFDVPRAVQHVQQKAVEDGPLATGAVHHHSPAPRRLRPPCPPFGPLA 540
LLREVGFALAALNTFDVPRAVQHVQQKAVEDGPLATGAVHHHSPAPRRLRPPCPPFGPLA
Sbjct: 481 LLREVGFALAALNTFDVPRAVQHVQQKAVEDGPLATGAVHHHSPAPRRLRPPCPPFGPLA 540
Query: 541 LGPAGPSAALRLLSQQLQGESGPDQDSAGPVLGQSLAWRWAARSGVVGGGWRSQPHATGR 600
LGPAGPSAALRLLSQQLQGESGPDQDSAGPVLGQSLAWRWAARSGVVGGGWRSQPHATGR
Sbjct: 541 LGPAGPSAALRLLSQQLQGESGPDQDSAGPVLGQSLAWRWAARSGVVGGGWRSQPHATGR 600
Query: 601 TPRRLFRASPGISGGCWPRRCGAAFPGGGGAGTFPHFQAVRILIFVWSPRNSRILIQIW 659
TPRRLFRASPGISGGCWPRRCGAAFPGGGGAGTFPHFQAVRILIFVWSPRNSRILIQIW
Sbjct: 601 TPRRLFRASPGISGGCWPRRCGAAFPGGGGAGTFPHFQAVRILIFVWSPRNSRILIQIW 659
>gi|239756788 PREDICTED: hypothetical protein [Homo sapiens]
Length = 121
Score = 119 bits (297), Expect = 1e-26
Identities = 61/77 (79%), Positives = 63/77 (81%)
Query: 179 SCSRMWRVGLGVAAKAALSVSSCLALMVVRGPRRLVPEFCSSFSLLAVSLSDEVELSVSL 238
SCSRMWRVGLGVAAKAA SVSSCLALMVVRGPRRL P F SSFSLL SLSD + LS SL
Sbjct: 12 SCSRMWRVGLGVAAKAAFSVSSCLALMVVRGPRRLAPRFWSSFSLLPASLSDTLALSESL 71
Query: 239 GSSCSASWRSGDKLRSV 255
SSC SW SGDKL S+
Sbjct: 72 ASSCDGSWESGDKLGSL 88
>gi|239751282 PREDICTED: hypothetical protein XP_002347785 [Homo
sapiens]
Length = 121
Score = 119 bits (297), Expect = 1e-26
Identities = 61/77 (79%), Positives = 63/77 (81%)
Query: 179 SCSRMWRVGLGVAAKAALSVSSCLALMVVRGPRRLVPEFCSSFSLLAVSLSDEVELSVSL 238
SCSRMWRVGLGVAAKAA SVSSCLALMVVRGPRRL P F SSFSLL SLSD + LS SL
Sbjct: 12 SCSRMWRVGLGVAAKAAFSVSSCLALMVVRGPRRLAPRFWSSFSLLPASLSDTLALSESL 71
Query: 239 GSSCSASWRSGDKLRSV 255
SSC SW SGDKL S+
Sbjct: 72 ASSCDGSWESGDKLGSL 88
>gi|239745777 PREDICTED: hypothetical protein XP_002343552 [Homo
sapiens]
Length = 121
Score = 119 bits (297), Expect = 1e-26
Identities = 61/77 (79%), Positives = 63/77 (81%)
Query: 179 SCSRMWRVGLGVAAKAALSVSSCLALMVVRGPRRLVPEFCSSFSLLAVSLSDEVELSVSL 238
SCSRMWRVGLGVAAKAA SVSSCLALMVVRGPRRL P F SSFSLL SLSD + LS SL
Sbjct: 12 SCSRMWRVGLGVAAKAAFSVSSCLALMVVRGPRRLAPRFWSSFSLLPASLSDTLALSESL 71
Query: 239 GSSCSASWRSGDKLRSV 255
SSC SW SGDKL S+
Sbjct: 72 ASSCDGSWESGDKLGSL 88
>gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 40.0 bits (92), Expect = 0.007
Identities = 56/199 (28%), Positives = 70/199 (35%), Gaps = 30/199 (15%)
Query: 6 GKRAGRDPSPSAPGI--GQVRNSESRGAPYLRSRCTGWTPTSQ-TRPSGRPADACAADSG 62
G R G P AP G + + G +R W P ++ +R +GR A
Sbjct: 47 GARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPC- 105
Query: 63 RRRASGRLGRSAVSSGVLWTDSPEAGPGRIRPGGVERGFGEPAKGEGFRGPVGRLIKTWA 122
RA GR GR+A + SP G R P GVER G A V
Sbjct: 106 --RAPGR-GRAAATRR-----SPAPGTARGSPAGVERAGGATAASSAGTRSV-------- 149
Query: 123 SWSPAR--PRPDGSIKASLPARLSPRPLGSGASLWPFVCPRFGAGREGASPVSLLERWSC 180
PAR P P G +R RP + P R+ A +P R
Sbjct: 150 ---PARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAP-----RPGA 201
Query: 181 SRMWRVGLGVAAKAALSVS 199
W VG VAA A + S
Sbjct: 202 PGTWPVGFAVAAPPAAAAS 220
>gi|53692189 adipocyte enhancer binding protein 1 precursor [Homo
sapiens]
Length = 1158
Score = 39.3 bits (90), Expect = 0.012
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 265 GKGTAASATARRLFSPVAGSRRPKLRPAQATASPAGFPPKPATAPPPGTRCPPTLS 320
GK AT + P +++PK +P +AT P PPK PP G R PP L+
Sbjct: 120 GKEKPPKATKKPKEKPPKATKKPKEKPPKATKKPKEKPPKATKKPPSGKR-PPILA 174
Score = 34.3 bits (77), Expect = 0.38
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 280 PVAGSRRPKLRPAQATASPAGFPPK----PATAPPPGTRCPPTLSR 321
P +++PK +P +AT P PPK P PP T+ PP+ R
Sbjct: 124 PPKATKKPKEKPPKATKKPKEKPPKATKKPKEKPPKATKKPPSGKR 169
>gi|95091988 Rho GTPase activating protein 6 isoform 3 [Homo
sapiens]
Length = 765
Score = 37.7 bits (86), Expect = 0.034
Identities = 36/104 (34%), Positives = 46/104 (44%), Gaps = 12/104 (11%)
Query: 219 SSFSLLAVSLSDEVELSVSLGSSCSASWRSGDKLRSVQDDTAGG-----RIGKGTAASAT 273
S+ SLL S S S S+ S R + RS+ GG +G+A AT
Sbjct: 2 SAQSLLHSVFSCSSPASSSAASAKGFSKRKLRQTRSLDPALIGGCGSDEAGAEGSARGAT 61
Query: 274 ARRLFSPV--AGSRRPKLRPAQATASPAGFPPKPATAPPPGTRC 315
A RL+SP A S P+L +S G PP+ PPPG C
Sbjct: 62 AGRLYSPSLPAESLGPRL-----ASSSRGPPPRATRLPPPGPLC 100
>gi|95091875 Rho GTPase activating protein 6 isoform 1 [Homo
sapiens]
Length = 974
Score = 37.7 bits (86), Expect = 0.034
Identities = 36/104 (34%), Positives = 46/104 (44%), Gaps = 12/104 (11%)
Query: 219 SSFSLLAVSLSDEVELSVSLGSSCSASWRSGDKLRSVQDDTAGG-----RIGKGTAASAT 273
S+ SLL S S S S+ S R + RS+ GG +G+A AT
Sbjct: 2 SAQSLLHSVFSCSSPASSSAASAKGFSKRKLRQTRSLDPALIGGCGSDEAGAEGSARGAT 61
Query: 274 ARRLFSPV--AGSRRPKLRPAQATASPAGFPPKPATAPPPGTRC 315
A RL+SP A S P+L +S G PP+ PPPG C
Sbjct: 62 AGRLYSPSLPAESLGPRL-----ASSSRGPPPRATRLPPPGPLC 100
>gi|19913398 smoothelin isoform a [Homo sapiens]
Length = 940
Score = 36.6 bits (83), Expect = 0.076
Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 15/103 (14%)
Query: 263 RIGKGTAASATARRLFSPVAGSRRPKLRPAQATASPAGFP--PKPATAPPPGTRCPPTLS 320
R G+ +S+ A SP S P L PA+A A P P+P +PP T P S
Sbjct: 192 RAPPGSTSSSPASPSSSPTPASPEPPLEPAEAQCLTAEVPGSPEPPPSPPKTTSPEPQES 251
Query: 321 RRGWAFGGALLSPLRASQLVPGPQLMSFQCIKKLPGAQVTHKG 363
+ G ++ ++L+ GP K+ P AQ H+G
Sbjct: 252 PTLPSTEGQVV-----NKLLSGP--------KETPAAQSPHRG 281
>gi|145309320 forkhead box Q1 [Homo sapiens]
Length = 403
Score = 36.2 bits (82), Expect = 0.099
Identities = 36/124 (29%), Positives = 43/124 (34%), Gaps = 24/124 (19%)
Query: 275 RRLFSPVAGSRRPKLRPAQATASPAGFPPKPATAPPPGTRCPPTLSRR---------GWA 325
R+ S A P LRP +A PA PP PA P R P R +A
Sbjct: 213 RKRLSHRAPVPAPGLRPEEAPGLPAAPPPAPAAPASPRMRSPARQEERASPAGKFSSSFA 272
Query: 326 FGGALLSPLRASQL-------------VPGPQLMSFQCIKKLPGAQVTHKGELCASKLGE 372
L P R+ +L P P L +F + LP A LCA GE
Sbjct: 273 IDSILRKPFRSRRLRDTAPGTTLQWGAAPCPPLPAFPAL--LPAAPCRALLPLCAYGAGE 330
Query: 373 EGNL 376
L
Sbjct: 331 PARL 334
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 36.2 bits (82), Expect = 0.099
Identities = 33/118 (27%), Positives = 44/118 (37%), Gaps = 11/118 (9%)
Query: 21 GQVRNSESRGAPYLRSRCTGWTPTSQTRPSGRPADACAADSGRRRASGRLGRSAVSSGVL 80
G ++ +RGAP R P P G AD G + +G+ G +G
Sbjct: 810 GPAGSAGARGAPGERGETGPPGPAGFAGPPG--ADGQPGAKGEQGEAGQKG----DAGAP 863
Query: 81 WTDSPEAGPGRIRPGGVE-----RGFGEPAKGEGFRGPVGRLIKTWASWSPARPRPDG 133
P PG P GV RG P GF G GR+ ++ +P P P G
Sbjct: 864 GPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPG 921
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 36.2 bits (82), Expect = 0.099
Identities = 33/118 (27%), Positives = 44/118 (37%), Gaps = 11/118 (9%)
Query: 21 GQVRNSESRGAPYLRSRCTGWTPTSQTRPSGRPADACAADSGRRRASGRLGRSAVSSGVL 80
G ++ +RGAP R P P G AD G + +G+ G +G
Sbjct: 741 GPAGSAGARGAPGERGETGPPGPAGFAGPPG--ADGQPGAKGEQGEAGQKG----DAGAP 794
Query: 81 WTDSPEAGPGRIRPGGVE-----RGFGEPAKGEGFRGPVGRLIKTWASWSPARPRPDG 133
P PG P GV RG P GF G GR+ ++ +P P P G
Sbjct: 795 GPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPG 852
>gi|239752594 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 673
Score = 36.2 bits (82), Expect = 0.099
Identities = 63/254 (24%), Positives = 95/254 (37%), Gaps = 45/254 (17%)
Query: 84 SPEAGPGRIRPGGVERGFGEPAKGEGFRGPVGRLIKTWASWSPARPRPDGSIKASLPARL 143
SP P R P G+ K + L + + +P R P GS P R
Sbjct: 183 SPTGMPSRTSPTGMP-STASLTKMDSTASITRTLSRASPTGTPPRASPTGS-----PPRA 236
Query: 144 SPRPLGSGASLWPFVCPRFGAGREGASPVSLLERWSCSRMWRVG--------------LG 189
S + S A L PR ASP +L R S ++M G
Sbjct: 237 SLSMMPSTALLIR-TPPR-------ASPTGMLSRTSLTKMDSTASITRTPSRPSTASPTG 288
Query: 190 VAAKAALSVSSCLALMVVRGPRRLVPEFCSSFSLLAVSLSDEVELSVSLGSSCSASWRSG 249
++A+LS++ A ++ R++P + L SL+ + S+ S S R+
Sbjct: 289 TPSRASLSMTPSTASLM-----RMLPRASPTGMLSRTSLT-------KMDSTASIS-RTP 335
Query: 250 DKLRSVQDDTAGGRIGKGTAASATAR-RLFSPVAGSRRPKLRPAQATASPAGFPPKPATA 308
+ + + GK + AS T SP L +TASP G PP+ A
Sbjct: 336 PRASITRTPSRASPTGKPSTASPTGTPSRASPTGSPSTASLTGLSSTASPTGTPPR---A 392
Query: 309 PPPGTRCPPTLSRR 322
P GT +L+R+
Sbjct: 393 SPTGTPSTASLTRK 406
Score = 29.6 bits (65), Expect = 9.2
Identities = 74/292 (25%), Positives = 105/292 (35%), Gaps = 43/292 (14%)
Query: 45 SQTRPSGRPADACAADSGRRRASGRLGRSAVSSGVLWTDSPEAGPGRIRPGGVERG---F 101
S+T P+G P+ A + R A +G SP P R +
Sbjct: 189 SRTSPTGMPSTASLTKMDSTASITRTLSRASPTGTPPRASPTGSPPRASLSMMPSTALLI 248
Query: 102 GEPAKGEGFRGPVGRLIKT-------WASWSPARPRPDGSIKASLPARLSPRPLGSGASL 154
P + P G L +T AS + RP + P+R S S ASL
Sbjct: 249 RTPPRAS----PTGMLSRTSLTKMDSTASITRTPSRPSTASPTGTPSRASLSMTPSTASL 304
Query: 155 WPFVCPRFGAGREGASPVSLLERWSCSRMWRVGLGVAAKAALSVSSCLALMVVRGPRRLV 214
+ PR ASP +L R S ++M + A++S + A + R P R
Sbjct: 305 MRML-PR-------ASPTGMLSRTSLTKM-------DSTASISRTPPRA-SITRTPSRAS 348
Query: 215 PEFCSSFSLLAVSLSDEVELSVSLGSSCSASWRSGDKLRSVQDDTAGGRIGKGTAASATA 274
P S S + + GS +AS +G + T GT ++A+
Sbjct: 349 PTGKPS----TASPTGTPSRASPTGSPSTASL-TGLSSTASPTGTPPRASPTGTPSTASL 403
Query: 275 RRL---FSPVAGSRRPKLRPAQATASPAGFPPKPATAPPPGTRCPPTLSRRG 323
R SP R + +TASP PP+ A P GT PP S G
Sbjct: 404 TRKPPRASPTGMLSRTSITKMDSTASPTRTPPR---ASPTGT--PPRASPTG 450
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 36.2 bits (82), Expect = 0.099
Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 275 RRLFSPVAGSRRPKLRPAQATASPAGFPPKPATAPPPGTRCPPTLSRRGWAFGGALLSPL 334
RR +P A R P+ PA A A A PP PA PPP +R A A +P
Sbjct: 103 RRGATPPAPPRAPRGAPAAAAA--AAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATAPP 160
Query: 335 RASQLVPGPQ 344
PGP+
Sbjct: 161 SPGPAQPGPR 170
>gi|39812378 RAN binding protein 9 [Homo sapiens]
Length = 729
Score = 35.8 bits (81), Expect = 0.13
Identities = 30/86 (34%), Positives = 33/86 (38%), Gaps = 9/86 (10%)
Query: 261 GGRIGKGTAASATARRLFSPVAGSRRPKLRPAQATASPAGFPPKP---ATAPPPGTRCPP 317
GG G+G A+A A L P P PA A P PP P A AP G PP
Sbjct: 53 GGAGGEGLGAAAAALLLHPP------PPPPPATAAPPPPPPPPPPPASAAAPASGPPAPP 106
Query: 318 TLSRRGWAFGGALLSPLRASQLVPGP 343
L+ GGA L A P
Sbjct: 107 GLAAGPGPAGGAPTPALVAGSSAAAP 132
>gi|27262645 ataxin 2 related protein isoform B [Homo sapiens]
Length = 1062
Score = 35.8 bits (81), Expect = 0.13
Identities = 33/119 (27%), Positives = 44/119 (36%), Gaps = 21/119 (17%)
Query: 288 KLRPAQATASPAGFPP--KPATAPPPGTRCPPTLSRRGWAFGGALLSPLRASQLVPGPQL 345
K +P Q + P PP + PPG PP G L PL S PGP
Sbjct: 3 KPQPLQQPSQPQQPPPTQQAVARRPPGGTSPPN---------GGLPGPLATSAAPPGPPA 53
Query: 346 MSFQCIKKLPGAQVTHKGELCASKLGEEGNL---EKAPELEEELPGADELQAQHRQHTG 401
+ C+ + A + G EG L P+ +E PGA + + Q TG
Sbjct: 54 AASPCLGPVAAAG-------SGLRRGAEGILAPQPPPPQQHQERPGAAAIGSARGQSTG 105
>gi|27262653 ataxin 2 related protein isoform E [Homo sapiens]
Length = 1044
Score = 35.8 bits (81), Expect = 0.13
Identities = 33/119 (27%), Positives = 44/119 (36%), Gaps = 21/119 (17%)
Query: 288 KLRPAQATASPAGFPP--KPATAPPPGTRCPPTLSRRGWAFGGALLSPLRASQLVPGPQL 345
K +P Q + P PP + PPG PP G L PL S PGP
Sbjct: 3 KPQPLQQPSQPQQPPPTQQAVARRPPGGTSPPN---------GGLPGPLATSAAPPGPPA 53
Query: 346 MSFQCIKKLPGAQVTHKGELCASKLGEEGNL---EKAPELEEELPGADELQAQHRQHTG 401
+ C+ + A + G EG L P+ +E PGA + + Q TG
Sbjct: 54 AASPCLGPVAAAG-------SGLRRGAEGILAPQPPPPQQHQERPGAAAIGSARGQSTG 105
>gi|27262649 ataxin 2 related protein isoform C [Homo sapiens]
Length = 1097
Score = 35.8 bits (81), Expect = 0.13
Identities = 33/119 (27%), Positives = 44/119 (36%), Gaps = 21/119 (17%)
Query: 288 KLRPAQATASPAGFPP--KPATAPPPGTRCPPTLSRRGWAFGGALLSPLRASQLVPGPQL 345
K +P Q + P PP + PPG PP G L PL S PGP
Sbjct: 3 KPQPLQQPSQPQQPPPTQQAVARRPPGGTSPPN---------GGLPGPLATSAAPPGPPA 53
Query: 346 MSFQCIKKLPGAQVTHKGELCASKLGEEGNL---EKAPELEEELPGADELQAQHRQHTG 401
+ C+ + A + G EG L P+ +E PGA + + Q TG
Sbjct: 54 AASPCLGPVAAAG-------SGLRRGAEGILAPQPPPPQQHQERPGAAAIGSARGQSTG 105
>gi|27262647 ataxin 2 related protein isoform A [Homo sapiens]
Length = 1075
Score = 35.8 bits (81), Expect = 0.13
Identities = 33/119 (27%), Positives = 44/119 (36%), Gaps = 21/119 (17%)
Query: 288 KLRPAQATASPAGFPP--KPATAPPPGTRCPPTLSRRGWAFGGALLSPLRASQLVPGPQL 345
K +P Q + P PP + PPG PP G L PL S PGP
Sbjct: 3 KPQPLQQPSQPQQPPPTQQAVARRPPGGTSPPN---------GGLPGPLATSAAPPGPPA 53
Query: 346 MSFQCIKKLPGAQVTHKGELCASKLGEEGNL---EKAPELEEELPGADELQAQHRQHTG 401
+ C+ + A + G EG L P+ +E PGA + + Q TG
Sbjct: 54 AASPCLGPVAAAG-------SGLRRGAEGILAPQPPPPQQHQERPGAAAIGSARGQSTG 105
>gi|27262651 ataxin 2 related protein isoform D [Homo sapiens]
Length = 1044
Score = 35.8 bits (81), Expect = 0.13
Identities = 33/119 (27%), Positives = 44/119 (36%), Gaps = 21/119 (17%)
Query: 288 KLRPAQATASPAGFPP--KPATAPPPGTRCPPTLSRRGWAFGGALLSPLRASQLVPGPQL 345
K +P Q + P PP + PPG PP G L PL S PGP
Sbjct: 3 KPQPLQQPSQPQQPPPTQQAVARRPPGGTSPPN---------GGLPGPLATSAAPPGPPA 53
Query: 346 MSFQCIKKLPGAQVTHKGELCASKLGEEGNL---EKAPELEEELPGADELQAQHRQHTG 401
+ C+ + A + G EG L P+ +E PGA + + Q TG
Sbjct: 54 AASPCLGPVAAAG-------SGLRRGAEGILAPQPPPPQQHQERPGAAAIGSARGQSTG 105
>gi|153285461 fibroblast growth factor 2 [Homo sapiens]
Length = 288
Score = 35.4 bits (80), Expect = 0.17
Identities = 33/102 (32%), Positives = 38/102 (37%), Gaps = 8/102 (7%)
Query: 35 RSRCTGWTPTSQTRPSGRPADACAADSGRRRA--SGRLGRSAVSSGVLWTDSPEAGPGRI 92
RSR G T R RP+ + D GR RA GRLG +PE GR
Sbjct: 56 RSRAAGSPRTRGRRTEERPSGSRLGDRGRGRALPGGRLGGRGRGR------APERVGGRG 109
Query: 93 RPGGVERGFGEPAKGEGFRGPVGRLIKTWASWSPARPRPDGS 134
R G PA GP G + + PA P GS
Sbjct: 110 RGRGTAAPRAAPAARGSRPGPAGTMAAGSITTLPALPEDGGS 151
>gi|239746104 PREDICTED: hypothetical protein XP_002344198 [Homo
sapiens]
Length = 398
Score = 35.4 bits (80), Expect = 0.17
Identities = 44/166 (26%), Positives = 54/166 (32%), Gaps = 21/166 (12%)
Query: 15 PSAPGIGQVRNSESRGAPYLRSRCTGWTPTSQTRPSGRPADACAADSGRRRASGRLGRSA 74
P APG Q+R S +R P R + R P G +G+
Sbjct: 70 PGAPGGQQLRKSRAR-LPRTRQGREDAGVGRRNRDPAEPGSLRPTSLGFPARAGQGRVQG 128
Query: 75 VSSGVLWTDSPEAGPGRIRP-GGVERGFGEPAK------GEGFR-------------GPV 114
+ G P+ PGR P GGV G G A G GF P
Sbjct: 129 AAPGRKLRGEPKTPPGRSGPSGGVRSGAGHRAAAAEHQLGAGFSVRNGPGPPARLPPAPP 188
Query: 115 GRLIKTWASWSPARPRPDGSIKASLPARLSPRPLGSGASLWPFVCP 160
G L++ P PRP P+R P PL S W P
Sbjct: 189 GPLLRPARPPRPYFPRPRTPPTCEPPSRKLPPPLPLCRSRWVLAPP 234
>gi|113411427 PREDICTED: hypothetical protein [Homo sapiens]
Length = 268
Score = 35.4 bits (80), Expect = 0.17
Identities = 52/180 (28%), Positives = 69/180 (38%), Gaps = 32/180 (17%)
Query: 6 GKRAGRDPSPSAPGIGQVRNSESRGAPYL-RSRCTGWTPTSQTRPSGRPADACAADSGRR 64
G++ GR +P A +G + RG P L +S T W+ R R A+ C
Sbjct: 52 GEQNGRKATPQAGALGALG---IRGIPSLCQSEGTRWS-----RRGRRWAERCPPGVLGA 103
Query: 65 RASGRLGRSAVSSGVLWTDSPEAGPGRIRPGGVERGFGEPAKGEGFRGPVGRLIKTWASW 124
S R RS + S P P R +PGG + A G + L TW W
Sbjct: 104 GRSLRAQRSRLHSR-----PPPLSPLR-KPGGSNQPRSAAAAGTQ-EACLQALGTTWG-W 155
Query: 125 SPARPRPDGSIKASLPARLSPRPLGSGASLWPFVCPRFGAGREGASPVSLLERWSCSRMW 184
+LP RL PR +G++L CPR G G G E + SR W
Sbjct: 156 K----------YHALPLRLDPRSGHAGSALKAGSCPRLGGGGRGRG-----EAGAPSRFW 200
>gi|122937496 WAS/WASL interacting protein family, member 3 [Homo
sapiens]
Length = 483
Score = 35.4 bits (80), Expect = 0.17
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 256 QDDTAGGRIGKGTAASATARRL-----FSPVAGSRRPKL-RPAQATASPAGFPPKP-ATA 308
Q D AGG+ G+G + A + RL P+ P+L ++A + PP+P A
Sbjct: 114 QRDVAGGKTGQGPGSRAPSPRLPNKTISGPLIPPASPRLGNTSEAHGAARTAPPRPNVPA 173
Query: 309 PPPGTRCPP 317
PPP T PP
Sbjct: 174 PPPPTPPPP 182
>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
Length = 629
Score = 35.4 bits (80), Expect = 0.17
Identities = 39/111 (35%), Positives = 49/111 (44%), Gaps = 12/111 (10%)
Query: 527 RRLRPPCPPFGPLALGPAGPSAALRLLSQQLQGESGPDQDSAGPVLGQSLAWRWAARSGV 586
RR+RP P GP+ PSA R L L G +G D + + LG L R A G
Sbjct: 488 RRVRPRAPAARVPGPGPS-PSAPQRRL---LYGCAGSDSECSAGRLGP-LGRRGPA--GG 540
Query: 587 VGGGWRSQPHATGRTPRRLFRA----SPGISGGCWPRRCGAA-FPGGGGAG 632
VGGG+ + F + S G G WP++ AA GGGAG
Sbjct: 541 VGGGYGESESSASEGESPAFSSASSDSDGSGGLVWPQQLVAATAASGGGAG 591
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 35.0 bits (79), Expect = 0.22
Identities = 30/71 (42%), Positives = 34/71 (47%), Gaps = 10/71 (14%)
Query: 274 ARRLFSPVA-GS----RRPKLRPAQATASPAGFPPKPATAPPPGTRCPPTLSRRGWAFGG 328
AR L P+A GS RRP PA A ASP PP PA+ PPG P R +GG
Sbjct: 743 ARPLVGPLALGSPRLVRRPPPGPAPAAASPG--PPPPAS--PPGAPASPRAPRTS-PYGG 797
Query: 329 ALLSPLRASQL 339
+PL L
Sbjct: 798 LPAAPLAGPAL 808
>gi|169209134 PREDICTED: hypothetical protein [Homo sapiens]
Length = 107
Score = 35.0 bits (79), Expect = 0.22
Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Query: 283 GSRRPKLRPAQATASPAGFPPKPATAPPPGTRCPPTLSRRGWAFGGALLSPLRASQLVPG 342
G RRP++ S P PA PP PP+ +RRG A AL +P SQ P
Sbjct: 11 GVRRPEVPAPPGDPSVQPAPETPAAPAPPPGPAPPS-NRRGLA---ALRAPTHKSQNFPQ 66
Query: 343 PQLMSFQCIKKLPG 356
+ +S +LPG
Sbjct: 67 LRQLSCALTVRLPG 80
>gi|239748716 PREDICTED: hypothetical protein XP_002346782 [Homo
sapiens]
Length = 267
Score = 35.0 bits (79), Expect = 0.22
Identities = 45/149 (30%), Positives = 60/149 (40%), Gaps = 9/149 (6%)
Query: 4 SGGK-RAGRDPSPSAPGI-GQVRNSESRGAPYLRSRC-TGWTPTSQ--TRPSGRPADACA 58
+GG+ R G P PSA G ++ +RG R G + TSQ T G A A A
Sbjct: 75 TGGQWRWGVSPRPSAASATGPPQDRAARGCELREGRAEAGHSSTSQKDTLSKGSAAAATA 134
Query: 59 ADSGRRRASGRLGRSAVSSGVLWTDSPEAGPGRIRPGGVERGFGEPAKGEGFRGPVGRLI 118
+G+ A R V + T +P GPGR RPGG G + P+ +
Sbjct: 135 VAAGKHLAVPET-RGGVPARRRETANPP-GPGRARPGGSPFGHRPLLQPRQIFAPLQAIT 192
Query: 119 KTWASWSPARPRPDGSIKASLPARLSPRP 147
P P GS A+ R + RP
Sbjct: 193 NQVRPQQRPEPPPAGS--AARSGRRAQRP 219
>gi|239742745 PREDICTED: hypothetical protein XP_002342616 [Homo
sapiens]
Length = 248
Score = 35.0 bits (79), Expect = 0.22
Identities = 45/149 (30%), Positives = 60/149 (40%), Gaps = 9/149 (6%)
Query: 4 SGGK-RAGRDPSPSAPGI-GQVRNSESRGAPYLRSRC-TGWTPTSQ--TRPSGRPADACA 58
+GG+ R G P PSA G ++ +RG R G + TSQ T G A A A
Sbjct: 56 TGGQWRWGVSPRPSAASATGPPQDRAARGCELREGRAEAGHSSTSQKDTLSKGSAAAATA 115
Query: 59 ADSGRRRASGRLGRSAVSSGVLWTDSPEAGPGRIRPGGVERGFGEPAKGEGFRGPVGRLI 118
+G+ A R V + T +P GPGR RPGG G + P+ +
Sbjct: 116 VAAGKHLAVPET-RGGVPARRRETANPP-GPGRARPGGSPFGHRPLLQPRQIFAPLQAIT 173
Query: 119 KTWASWSPARPRPDGSIKASLPARLSPRP 147
P P GS A+ R + RP
Sbjct: 174 NQVRPQQRPEPPPAGS--AARSGRRAQRP 200
>gi|169161400 PREDICTED: hypothetical protein [Homo sapiens]
Length = 268
Score = 35.0 bits (79), Expect = 0.22
Identities = 51/180 (28%), Positives = 68/180 (37%), Gaps = 32/180 (17%)
Query: 6 GKRAGRDPSPSAPGIGQVRNSESRGAPYL-RSRCTGWTPTSQTRPSGRPADACAADSGRR 64
G++ GR +P A +G + RG P L +S T W+ R R A+ C
Sbjct: 52 GEQNGRKATPQAGALGALG---IRGIPSLCQSEGTRWS-----RRGRRWAERCPPGVLGA 103
Query: 65 RASGRLGRSAVSSGVLWTDSPEAGPGRIRPGGVERGFGEPAKGEGFRGPVGRLIKTWASW 124
S R RS + S P P R +PGG + A G T +
Sbjct: 104 GRSLRAQRSRLHSR-----PPPLSPLR-KPGGSNQPRSAAAAG------------TQEAC 145
Query: 125 SPARPRPDGSIKASLPARLSPRPLGSGASLWPFVCPRFGAGREGASPVSLLERWSCSRMW 184
A G +LP RL PR +G++L CPR G G G E + SR W
Sbjct: 146 LQASGTTRGWKYHALPLRLDPRSGHAGSALKAGSCPRLGGGGRGRG-----EAGAPSRFW 200
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,425,580
Number of Sequences: 37866
Number of extensions: 1973489
Number of successful extensions: 12429
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 343
Number of HSP's that attempted gapping in prelim test: 11350
Number of HSP's gapped (non-prelim): 1435
length of query: 659
length of database: 18,247,518
effective HSP length: 109
effective length of query: 550
effective length of database: 14,120,124
effective search space: 7766068200
effective search space used: 7766068200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.