Guide to the Human Genome
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Name: LOC100132999 Sequence: fasta or formatted (268aa) NCBI GI: 169161400
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.7         26           4
 C cysteine            1.9          5           1
 D aspartate           1.5          4           1
 E glutamate           2.6          7           1
 F phenylalanine       1.9          5           1
 G glycine            12.7         34           4
 H histidine           1.9          5           1
 I isoleucine          1.9          5           1
 K lysine              3.7         10           1
 L leucine             7.8         21           2
 M methionine          0.4          1           1
 N asparagine          2.6          7           1
 P proline            10.8         29           3
 Q glutamine           7.1         19           2
 R arginine           14.9         40           2
 S serine              9.7         26           2
 T threonine           4.1         11           2
 V valine              1.5          4           1
 W tryptophan          3.0          8           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC730256             0.996   PREDICTED: hypothetical protein 
LOC642441             0.976   PREDICTED: hypothetical protein 
LOC100287981          0.961   PREDICTED: hypothetical protein XP_002344484 
FLJ37078              0.035   hypothetical protein LOC222183 
FLJ22184              0.035   PREDICTED: hypothetical protein LOC80164 
FLJ22184              0.033   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.033   PREDICTED: hypothetical protein FLJ22184 
C19orf29              0.030   chromosome 19 open reading frame 29 
C19orf29              0.030   chromosome 19 open reading frame 29 
LOC100292397          0.026   PREDICTED: hypothetical protein 
LOC100130128          0.026   PREDICTED: hypothetical protein 
LOC100289661          0.026   PREDICTED: hypothetical protein 
LOC100289917          0.026   PREDICTED: hypothetical protein XP_002347096 
LOC100130128          0.026   PREDICTED: hypothetical protein 
LOC100289661          0.026   PREDICTED: hypothetical protein XP_002343723 
LOC100130128          0.026   PREDICTED: hypothetical protein 
FAM22F                0.026   hypothetical protein LOC54754 
CIC                   0.024   capicua homolog 
LOC100292745          0.024   PREDICTED: hypothetical protein 
LOC100290074          0.024   PREDICTED: hypothetical protein XP_002346855 
LOC100288496          0.024   PREDICTED: hypothetical protein XP_002342747 
FLJ31945              0.022   PREDICTED: hypothetical protein 
LOC100289547          0.022   PREDICTED: hypothetical protein XP_002342981 
LOC100287034          0.022   PREDICTED: hypothetical protein XP_002342693 
FMR1                  0.022   fragile X mental retardation 1 
XYLT2                 0.022   xylosyltransferase II 
FLJ31945              0.022   PREDICTED: hypothetical protein 
LOC729204             0.022   PREDICTED: similar to hCG2045644 
FLJ31945              0.022   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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