Guide to the Human Genome
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Name: LOC100287741 Sequence: fasta or formatted (121aa) NCBI GI: 239745777
Description:

PREDICTED: hypothetical protein XP_002343552

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         10           2
 C cysteine            6.6          8           2
 D aspartate           2.5          3           1
 E glutamate           3.3          4           1
 F phenylalanine       2.5          3           1
 G glycine             7.4          9           1
 H histidine           1.7          2           1
 I isoleucine          0.0          0           0
 K lysine              1.7          2           1
 L leucine            14.0         17           2
 M methionine          3.3          4           1
 N asparagine          0.8          1           1
 P proline             6.6          8           1
 Q glutamine           0.8          1           1
 R arginine            9.9         12           2
 S serine             17.4         21           2
 T threonine           2.5          3           1
 V valine              5.8          7           2
 W tryptophan          3.3          4           1
 Y tyrosine            1.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343552 
LOC100293732          1.000   PREDICTED: hypothetical protein 
LOC100291314          1.000   PREDICTED: hypothetical protein XP_002347785 
LOC100287933          0.410   PREDICTED: hypothetical protein XP_002343257 
LOC100132738          0.022   PREDICTED: similar to hCG1817845 
TMEM132A              0.017   transmembrane protein 132A isoform a 
TMEM132A              0.017   transmembrane protein 132A isoform b 
MYCL1                 0.009   l-myc-1 proto-oncogene isoform 2 
MYCL1                 0.009   l-myc-1 proto-oncogene isoform 1 
MYCL1                 0.009   l-myc-1 proto-oncogene isoform 1 
FLG2                  0.009   filaggrin family member 2 
CADM3                 0.009   cell adhesion molecule 3 isoform 2 
CADM3                 0.009   cell adhesion molecule 3 isoform 1 
SIGLEC8               0.004   sialic acid binding Ig-like lectin 8 
ZNF498                0.004   zinc finger and SCAN domain containing 25 
C6orf174              0.004   hypothetical protein LOC387104 
LOC100131244          0.004   PREDICTED: similar to kinase D-interacting substrat...
LOC100131244          0.004   PREDICTED: similar to kinase D-interacting substrat...
LOC100131244          0.004   PREDICTED: similar to kinase D-interacting substrat...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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