Guide to the Human Genome
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Search of human proteins with 239744518

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239744518 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
         (155 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239755701 PREDICTED: hypothetical protein [Homo sapiens]           310   4e-85
gi|239750211 PREDICTED: hypothetical protein [Homo sapiens]           310   4e-85
gi|239744518 PREDICTED: hypothetical protein isoform 2 [Homo sap...   310   4e-85
gi|239744520 PREDICTED: hypothetical protein isoform 1 [Homo sap...    96   9e-21
gi|239752239 PREDICTED: hypothetical protein XP_002348169 [Homo ...    35   0.034
gi|239746759 PREDICTED: hypothetical protein XP_002343836 [Homo ...    35   0.034
gi|78499633 phospholipase C, eta 2 [Homo sapiens]                      33   0.13 
gi|169204928 PREDICTED: hypothetical protein [Homo sapiens]            33   0.13 
gi|239753399 PREDICTED: hypothetical protein [Homo sapiens]            33   0.13 
gi|113423861 PREDICTED: hypothetical protein [Homo sapiens]            33   0.13 
gi|113423437 PREDICTED: hypothetical protein [Homo sapiens]            33   0.13 
gi|239741865 PREDICTED: hypothetical protein XP_002342328 [Homo ...    33   0.13 
gi|50593110 5' nucleotidase, cytosolic IB isoform 1 [Homo sapiens]     33   0.13 
gi|239755298 PREDICTED: hypothetical protein [Homo sapiens]            32   0.17 
gi|239749793 PREDICTED: hypothetical protein XP_002347163 [Homo ...    32   0.17 
gi|239744053 PREDICTED: hypothetical protein XP_002343026 [Homo ...    32   0.17 
gi|239756609 PREDICTED: similar to hCG2045429 [Homo sapiens]           32   0.22 
gi|239751097 PREDICTED: similar to hCG2045429 [Homo sapiens]           32   0.22 
gi|169210070 PREDICTED: similar to hCG2045429 [Homo sapiens]           32   0.22 
gi|239749498 PREDICTED: hypothetical protein [Homo sapiens]            32   0.29 
gi|239743634 PREDICTED: hypothetical protein XP_002342919 [Homo ...    32   0.29 
gi|62241026 doublesex and mab-3 related transcription factor 1 [...    32   0.29 
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]         32   0.29 
gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo ...    31   0.37 
gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo ...    31   0.37 
gi|34452723 gamma-aminobutyric acid A receptor, alpha 4 precurso...    31   0.37 
gi|193083157 nuclear assembly factor 1 homolog isoform a [Homo s...    31   0.37 
gi|37595528 polyhomeotic-like 2 isoform a [Homo sapiens]               31   0.37 
gi|13994287 BTE-binding protein 4 [Homo sapiens]                       31   0.49 
gi|188497689 chromatin licensing and DNA replication factor 1 [H...    31   0.49 

>gi|239755701 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 155

 Score =  310 bits (793), Expect = 4e-85
 Identities = 155/155 (100%), Positives = 155/155 (100%)

Query: 1   MVLRFSQATRVTRSSMVHLQVALSPCRTVTLSIALGKVASPLRTGTPVGTRNSSLRDTTT 60
           MVLRFSQATRVTRSSMVHLQVALSPCRTVTLSIALGKVASPLRTGTPVGTRNSSLRDTTT
Sbjct: 1   MVLRFSQATRVTRSSMVHLQVALSPCRTVTLSIALGKVASPLRTGTPVGTRNSSLRDTTT 60

Query: 61  RHFQGRNRYPQTPILDSHNFPGLRQPHSPGPPPRAPAGSGSGAGRREGAEFARSRGKEKR 120
           RHFQGRNRYPQTPILDSHNFPGLRQPHSPGPPPRAPAGSGSGAGRREGAEFARSRGKEKR
Sbjct: 61  RHFQGRNRYPQTPILDSHNFPGLRQPHSPGPPPRAPAGSGSGAGRREGAEFARSRGKEKR 120

Query: 121 GVRALRSLRILPQILPQLSSLAEPDAPSCIQKELS 155
           GVRALRSLRILPQILPQLSSLAEPDAPSCIQKELS
Sbjct: 121 GVRALRSLRILPQILPQLSSLAEPDAPSCIQKELS 155


>gi|239750211 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 155

 Score =  310 bits (793), Expect = 4e-85
 Identities = 155/155 (100%), Positives = 155/155 (100%)

Query: 1   MVLRFSQATRVTRSSMVHLQVALSPCRTVTLSIALGKVASPLRTGTPVGTRNSSLRDTTT 60
           MVLRFSQATRVTRSSMVHLQVALSPCRTVTLSIALGKVASPLRTGTPVGTRNSSLRDTTT
Sbjct: 1   MVLRFSQATRVTRSSMVHLQVALSPCRTVTLSIALGKVASPLRTGTPVGTRNSSLRDTTT 60

Query: 61  RHFQGRNRYPQTPILDSHNFPGLRQPHSPGPPPRAPAGSGSGAGRREGAEFARSRGKEKR 120
           RHFQGRNRYPQTPILDSHNFPGLRQPHSPGPPPRAPAGSGSGAGRREGAEFARSRGKEKR
Sbjct: 61  RHFQGRNRYPQTPILDSHNFPGLRQPHSPGPPPRAPAGSGSGAGRREGAEFARSRGKEKR 120

Query: 121 GVRALRSLRILPQILPQLSSLAEPDAPSCIQKELS 155
           GVRALRSLRILPQILPQLSSLAEPDAPSCIQKELS
Sbjct: 121 GVRALRSLRILPQILPQLSSLAEPDAPSCIQKELS 155


>gi|239744518 PREDICTED: hypothetical protein isoform 2 [Homo
           sapiens]
          Length = 155

 Score =  310 bits (793), Expect = 4e-85
 Identities = 155/155 (100%), Positives = 155/155 (100%)

Query: 1   MVLRFSQATRVTRSSMVHLQVALSPCRTVTLSIALGKVASPLRTGTPVGTRNSSLRDTTT 60
           MVLRFSQATRVTRSSMVHLQVALSPCRTVTLSIALGKVASPLRTGTPVGTRNSSLRDTTT
Sbjct: 1   MVLRFSQATRVTRSSMVHLQVALSPCRTVTLSIALGKVASPLRTGTPVGTRNSSLRDTTT 60

Query: 61  RHFQGRNRYPQTPILDSHNFPGLRQPHSPGPPPRAPAGSGSGAGRREGAEFARSRGKEKR 120
           RHFQGRNRYPQTPILDSHNFPGLRQPHSPGPPPRAPAGSGSGAGRREGAEFARSRGKEKR
Sbjct: 61  RHFQGRNRYPQTPILDSHNFPGLRQPHSPGPPPRAPAGSGSGAGRREGAEFARSRGKEKR 120

Query: 121 GVRALRSLRILPQILPQLSSLAEPDAPSCIQKELS 155
           GVRALRSLRILPQILPQLSSLAEPDAPSCIQKELS
Sbjct: 121 GVRALRSLRILPQILPQLSSLAEPDAPSCIQKELS 155


>gi|239744520 PREDICTED: hypothetical protein isoform 1 [Homo
          sapiens]
          Length = 95

 Score = 96.3 bits (238), Expect = 9e-21
 Identities = 50/56 (89%), Positives = 50/56 (89%)

Query: 1  MVLRFSQATRVTRSSMVHLQVALSPCRTVTLSIALGKVASPLRTGTPVGTRNSSLR 56
          MVLRFSQATRVTRSSMVHLQVALSPCRTVTLSIALGKVASPLRTGTPV     S R
Sbjct: 1  MVLRFSQATRVTRSSMVHLQVALSPCRTVTLSIALGKVASPLRTGTPVDEEQGSCR 56


>gi|239752239 PREDICTED: hypothetical protein XP_002348169 [Homo
           sapiens]
          Length = 150

 Score = 34.7 bits (78), Expect = 0.034
 Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 3/95 (3%)

Query: 53  SSLRDTTTRHFQGRNRYPQTPILDSHN---FPGLRQPHSPGPPPRAPAGSGSGAGRREGA 109
           SS R   +  +   ++ P + +L S +   + G R P +PGP P A  GSG G G R  A
Sbjct: 31  SSKRSRCSPRWMLSSQSPTSNLLQSCSGFCWKGRRGPGAPGPGPDAGEGSGDGEGERLRA 90

Query: 110 EFARSRGKEKRGVRALRSLRILPQILPQLSSLAEP 144
              R+  +   G   +  L  L  +L   +S   P
Sbjct: 91  LTLRTTKRTSLGSCGMERLDDLRMLLRWATSWQGP 125


>gi|239746759 PREDICTED: hypothetical protein XP_002343836 [Homo
           sapiens]
          Length = 150

 Score = 34.7 bits (78), Expect = 0.034
 Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 3/95 (3%)

Query: 53  SSLRDTTTRHFQGRNRYPQTPILDSHN---FPGLRQPHSPGPPPRAPAGSGSGAGRREGA 109
           SS R   +  +   ++ P + +L S +   + G R P +PGP P A  GSG G G R  A
Sbjct: 31  SSKRSRCSPRWMLSSQSPTSNLLQSCSGFCWKGRRGPGAPGPGPDAGEGSGDGEGERLRA 90

Query: 110 EFARSRGKEKRGVRALRSLRILPQILPQLSSLAEP 144
              R+  +   G   +  L  L  +L   +S   P
Sbjct: 91  LTLRTTKRTSLGSCGMERLDDLRMLLRWATSWQGP 125


>gi|78499633 phospholipase C, eta 2 [Homo sapiens]
          Length = 1416

 Score = 32.7 bits (73), Expect = 0.13
 Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 14/62 (22%)

Query: 86   PHSPGPPPRAPAGSGSGAGRREGAEFARSRGKEKRGVRALRSLRILPQILPQLSSLAEPD 145
            P  PGP P APA  G G+G               R  R L + R LP  L  L ++AE  
Sbjct: 965  PPGPGPAPEAPAQEGPGSG-------------SPRDTRPLSTQRPLPP-LCSLETIAEEP 1010

Query: 146  AP 147
            AP
Sbjct: 1011 AP 1012


>gi|169204928 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 215

 Score = 32.7 bits (73), Expect = 0.13
 Identities = 25/71 (35%), Positives = 30/71 (42%), Gaps = 13/71 (18%)

Query: 66  RNRYPQTPILDSHNFPGLRQPHSPGPPPRAPAGSGS----------GAGRREGAEFARSR 115
           R R     + D    P    P  P P P AP   G+          G GRREG   AR R
Sbjct: 118 RPRAETAAVTDGVTSPRAWPPPPPPPLPPAPTRHGNTDVRASQPIAGCGRREG---ARWR 174

Query: 116 GKEKRGVRALR 126
           G+ +R  +ALR
Sbjct: 175 GRGQRQAKALR 185


>gi|239753399 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 165

 Score = 32.7 bits (73), Expect = 0.13
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 13/56 (23%)

Query: 66  RNRYPQTPILDSHNFPGLRQPHSPGPPPRAPAGSGSGAGRREGAEFARSRGKEKRG 121
           R+ YP+         P  R+ HSP PPP         +G   GAE    RG+E+RG
Sbjct: 9   RHPYPKV----GSRIPSNRKCHSPPPPP---------SGTLTGAECGGGRGRERRG 51


>gi|113423861 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 215

 Score = 32.7 bits (73), Expect = 0.13
 Identities = 25/71 (35%), Positives = 30/71 (42%), Gaps = 13/71 (18%)

Query: 66  RNRYPQTPILDSHNFPGLRQPHSPGPPPRAPAGSGS----------GAGRREGAEFARSR 115
           R R     + D    P    P  P P P AP   G+          G GRREG   AR R
Sbjct: 118 RPRAETAAVTDGVTSPRAWPPPPPPPLPPAPTRHGNTDVRASQPIAGCGRREG---ARWR 174

Query: 116 GKEKRGVRALR 126
           G+ +R  +ALR
Sbjct: 175 GRGQRQAKALR 185


>gi|113423437 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 215

 Score = 32.7 bits (73), Expect = 0.13
 Identities = 25/71 (35%), Positives = 30/71 (42%), Gaps = 13/71 (18%)

Query: 66  RNRYPQTPILDSHNFPGLRQPHSPGPPPRAPAGSGS----------GAGRREGAEFARSR 115
           R R     + D    P    P  P P P AP   G+          G GRREG   AR R
Sbjct: 118 RPRAETAAVTDGVTSPRAWPPPPPPPLPPAPTRHGNTDVRASQPIAGCGRREG---ARWR 174

Query: 116 GKEKRGVRALR 126
           G+ +R  +ALR
Sbjct: 175 GRGQRQAKALR 185


>gi|239741865 PREDICTED: hypothetical protein XP_002342328 [Homo
           sapiens]
          Length = 165

 Score = 32.7 bits (73), Expect = 0.13
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 13/56 (23%)

Query: 66  RNRYPQTPILDSHNFPGLRQPHSPGPPPRAPAGSGSGAGRREGAEFARSRGKEKRG 121
           R+ YP+         P  R+ HSP PPP         +G   GAE    RG+E+RG
Sbjct: 9   RHPYPKV----GSRIPSNRKCHSPPPPP---------SGTLTGAECGGGRGRERRG 51


>gi|50593110 5' nucleotidase, cytosolic IB isoform 1 [Homo sapiens]
          Length = 610

 Score = 32.7 bits (73), Expect = 0.13
 Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 11/86 (12%)

Query: 22  ALSPCRTVTLSIAL------GKVASPLRTGTPVGTRNSSLRDTTTRHFQGRNRYPQTPIL 75
           AL PC T+ + I +      G+  + +R     G++ SSLR T +R +  R+++ +    
Sbjct: 73  ALGPCHTIRIYIHMCLLWEQGQQITMMR-----GSQESSLRKTDSRGYLVRSQWSRISRS 127

Query: 76  DSHNFPGLRQPHSPGPPPRAPAGSGS 101
            S   P + +P S     + P+ S S
Sbjct: 128 PSTKAPSIDEPRSRNTSAKLPSSSTS 153


>gi|239755298 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 297

 Score = 32.3 bits (72), Expect = 0.17
 Identities = 32/119 (26%), Positives = 43/119 (36%), Gaps = 14/119 (11%)

Query: 13  RSSMVHLQVALSPCRTVTLSIALGKVASPLRTGTPVGTRNSSLRDTTTRHFQGRNRYPQT 72
           R S V ++  ++P  T   +  LGK   PLR+    G R ++ R   T  +    R    
Sbjct: 100 RESRVPVEAGVTPKGTNARACVLGKGGPPLRSPGSSGRRQAARRGAGTGLYPAAQRRAPA 159

Query: 73  PILDSHNFPGLRQP----------HSPGPPPRAPAGSGSGAGRREGAEFARSRGKEKRG 121
           P L     P  R+P           SPG P   PAG        +    ARS      G
Sbjct: 160 P-LRPCAIPAPRRPAAAARLGSAARSPGAP---PAGRSLAQPHPQSCPLARSPAYRSTG 214



 Score = 26.6 bits (57), Expect = 9.2
 Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 90  GPPPRAPAGSGSGAGRREGAEFARSRGKEKRGVRALRSLRI----LPQILPQLSSLA-EP 144
           GPP R+P  SG     R GA        ++R    LR   I     P    +L S A  P
Sbjct: 126 GPPLRSPGSSGRRQAARRGAGTGLYPAAQRRAPAPLRPCAIPAPRRPAAAARLGSAARSP 185

Query: 145 DAP 147
            AP
Sbjct: 186 GAP 188


>gi|239749793 PREDICTED: hypothetical protein XP_002347163 [Homo
           sapiens]
          Length = 250

 Score = 32.3 bits (72), Expect = 0.17
 Identities = 32/119 (26%), Positives = 43/119 (36%), Gaps = 14/119 (11%)

Query: 13  RSSMVHLQVALSPCRTVTLSIALGKVASPLRTGTPVGTRNSSLRDTTTRHFQGRNRYPQT 72
           R S V ++  ++P  T   +  LGK   PLR+    G R ++ R   T  +    R    
Sbjct: 53  RESRVPVEAGVTPKGTNARACVLGKGGPPLRSPGSSGRRQAARRGAGTGLYPAAQRRAPA 112

Query: 73  PILDSHNFPGLRQP----------HSPGPPPRAPAGSGSGAGRREGAEFARSRGKEKRG 121
           P L     P  R+P           SPG P   PAG        +    ARS      G
Sbjct: 113 P-LRPCAIPAPRRPAAAARLGSAARSPGAP---PAGRSLAQPHPQSCPLARSPAYRSTG 167



 Score = 26.6 bits (57), Expect = 9.2
 Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 90  GPPPRAPAGSGSGAGRREGAEFARSRGKEKRGVRALRSLRI----LPQILPQLSSLA-EP 144
           GPP R+P  SG     R GA        ++R    LR   I     P    +L S A  P
Sbjct: 79  GPPLRSPGSSGRRQAARRGAGTGLYPAAQRRAPAPLRPCAIPAPRRPAAAARLGSAARSP 138

Query: 145 DAP 147
            AP
Sbjct: 139 GAP 141


>gi|239744053 PREDICTED: hypothetical protein XP_002343026 [Homo
           sapiens]
          Length = 250

 Score = 32.3 bits (72), Expect = 0.17
 Identities = 32/119 (26%), Positives = 43/119 (36%), Gaps = 14/119 (11%)

Query: 13  RSSMVHLQVALSPCRTVTLSIALGKVASPLRTGTPVGTRNSSLRDTTTRHFQGRNRYPQT 72
           R S V ++  ++P  T   +  LGK   PLR+    G R ++ R   T  +    R    
Sbjct: 53  RESRVPVEAGVTPKGTNARACVLGKGGPPLRSPGSSGRRQAARRGAGTGLYPAAQRRAPA 112

Query: 73  PILDSHNFPGLRQP----------HSPGPPPRAPAGSGSGAGRREGAEFARSRGKEKRG 121
           P L     P  R+P           SPG P   PAG        +    ARS      G
Sbjct: 113 P-LRPCAIPAPRRPAAAARLGSAARSPGAP---PAGRSLAQPHPQSCPLARSPAYRSTG 167



 Score = 26.6 bits (57), Expect = 9.2
 Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 90  GPPPRAPAGSGSGAGRREGAEFARSRGKEKRGVRALRSLRI----LPQILPQLSSLA-EP 144
           GPP R+P  SG     R GA        ++R    LR   I     P    +L S A  P
Sbjct: 79  GPPLRSPGSSGRRQAARRGAGTGLYPAAQRRAPAPLRPCAIPAPRRPAAAARLGSAARSP 138

Query: 145 DAP 147
            AP
Sbjct: 139 GAP 141


>gi|239756609 PREDICTED: similar to hCG2045429 [Homo sapiens]
          Length = 178

 Score = 32.0 bits (71), Expect = 0.22
 Identities = 18/64 (28%), Positives = 24/64 (37%)

Query: 60  TRHFQGRNRYPQTPILDSHNFPGLRQPHSPGPPPRAPAGSGSGAGRREGAEFARSRGKEK 119
           T H  G +R  +  +      P L     P   P  P GSG G G  E  E+     + +
Sbjct: 89  TPHTAGSSRAFRDSLGPRERSPALSPTPLPHADPARPPGSGPGRGHGEAVEYLEKEERRE 148

Query: 120 RGVR 123
           R  R
Sbjct: 149 RSTR 152


>gi|239751097 PREDICTED: similar to hCG2045429 [Homo sapiens]
          Length = 178

 Score = 32.0 bits (71), Expect = 0.22
 Identities = 18/64 (28%), Positives = 24/64 (37%)

Query: 60  TRHFQGRNRYPQTPILDSHNFPGLRQPHSPGPPPRAPAGSGSGAGRREGAEFARSRGKEK 119
           T H  G +R  +  +      P L     P   P  P GSG G G  E  E+     + +
Sbjct: 89  TPHTAGSSRAFRDSLGPRERSPALSPTPLPHADPARPPGSGPGRGHGEAVEYLEKEERRE 148

Query: 120 RGVR 123
           R  R
Sbjct: 149 RSTR 152


>gi|169210070 PREDICTED: similar to hCG2045429 [Homo sapiens]
          Length = 178

 Score = 32.0 bits (71), Expect = 0.22
 Identities = 18/64 (28%), Positives = 24/64 (37%)

Query: 60  TRHFQGRNRYPQTPILDSHNFPGLRQPHSPGPPPRAPAGSGSGAGRREGAEFARSRGKEK 119
           T H  G +R  +  +      P L     P   P  P GSG G G  E  E+     + +
Sbjct: 89  TPHTAGSSRAFRDSLGPRERSPALSPTPLPHADPARPPGSGPGRGHGEAVEYLEKEERRE 148

Query: 120 RGVR 123
           R  R
Sbjct: 149 RSTR 152


>gi|239749498 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 692

 Score = 31.6 bits (70), Expect = 0.29
 Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 12/67 (17%)

Query: 82  GLRQPHSPGPPPRAPAGSGSGAGRR-EGAEFAR------SR----GKEKRGVRALRS-LR 129
           GL    +P P P   AG+G+GA +R EG   AR      SR     KE  G RA R+ L 
Sbjct: 557 GLAALRTPPPAPAGNAGTGTGARKRPEGGRGARYPCGSSSRVAVPSKEPAGPRAQRNLLP 616

Query: 130 ILPQILP 136
           +LP + P
Sbjct: 617 LLPLLAP 623


>gi|239743634 PREDICTED: hypothetical protein XP_002342919 [Homo
           sapiens]
          Length = 692

 Score = 31.6 bits (70), Expect = 0.29
 Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 12/67 (17%)

Query: 82  GLRQPHSPGPPPRAPAGSGSGAGRR-EGAEFAR------SR----GKEKRGVRALRS-LR 129
           GL    +P P P   AG+G+GA +R EG   AR      SR     KE  G RA R+ L 
Sbjct: 557 GLAALRTPPPAPAGNAGTGTGARKRPEGGRGARYPCGSSSRVAVPSKEPAGPRAQRNLLP 616

Query: 130 ILPQILP 136
           +LP + P
Sbjct: 617 LLPLLAP 623


>gi|62241026 doublesex and mab-3 related transcription factor 1
           [Homo sapiens]
          Length = 373

 Score = 31.6 bits (70), Expect = 0.29
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 86  PHSPGPPPRAPAGS-GSGAGRREGAEFARSRGKEKRG 121
           PH+PG PP+  AG  G  +G   GA    S G   RG
Sbjct: 17  PHAPGVPPQGRAGGFGKASGALVGAASGSSAGGSSRG 53


>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
          Length = 904

 Score = 31.6 bits (70), Expect = 0.29
 Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 8/113 (7%)

Query: 41  PLRTGTPVGTRNSSLRDTTTRHFQGRNRYPQTPILDSHNFPGLRQPHSPGPPPRAPAGSG 100
           P +  +PV  R S     +++H +G +    T    S   P   + HSP P PRAP  S 
Sbjct: 641 PKQRSSPVTKRRSP--SLSSKHRKGSSPSRSTREARS---PQPNKRHSPSPRPRAPQTSS 695

Query: 101 SGAGRREGAEFA-RSRGKEKRGVRALRSLRILPQILPQLSSLAEPDAPSCIQK 152
           S    R GA  + + R       R +R +   P+  P+    A   +P  +++
Sbjct: 696 SPPPVRRGASSSPQRRQSPSPSTRPIRRVSRTPE--PKKIKKAASPSPQSVRR 746


>gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo
           sapiens]
          Length = 647

 Score = 31.2 bits (69), Expect = 0.37
 Identities = 27/68 (39%), Positives = 32/68 (47%), Gaps = 11/68 (16%)

Query: 82  GLRQPHSPGPPPRAPAG--------SGSGAGRR-EGAEFARSRGKEKRGVRALRSLRILP 132
           G RQ   PGP  RAP G        +GS AGR  +    +R+R +  RG   LRS R  P
Sbjct: 433 GRRQDPEPGP--RAPRGGPASSGWHAGSAAGRGWDPGGGSRARRRAARGRGCLRSARSSP 490

Query: 133 QILPQLSS 140
              P  SS
Sbjct: 491 HARPLGSS 498


>gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo
           sapiens]
          Length = 647

 Score = 31.2 bits (69), Expect = 0.37
 Identities = 27/68 (39%), Positives = 32/68 (47%), Gaps = 11/68 (16%)

Query: 82  GLRQPHSPGPPPRAPAG--------SGSGAGRR-EGAEFARSRGKEKRGVRALRSLRILP 132
           G RQ   PGP  RAP G        +GS AGR  +    +R+R +  RG   LRS R  P
Sbjct: 433 GRRQDPEPGP--RAPRGGPASSGWHAGSAAGRGWDPGGGSRARRRAARGRGCLRSARSSP 490

Query: 133 QILPQLSS 140
              P  SS
Sbjct: 491 HARPLGSS 498


>gi|34452723 gamma-aminobutyric acid A receptor, alpha 4 precursor
           [Homo sapiens]
          Length = 554

 Score = 31.2 bits (69), Expect = 0.37
 Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 39  ASPLRTGTPVGTRNSSLRDTTTRH-FQGRNRYPQTPILDSHNFPGLRQPHSPGPPPRAPA 97
           ASP    T    R +S+   +TRH F  R +  +T +    N  G     S  PPP AP 
Sbjct: 454 ASPTSIRTGYMPRKASVGSASTRHVFGSRLQRIKTTV----NTIGATGKLSATPPPSAPP 509

Query: 98  GSGSGAGR 105
            SGSG  +
Sbjct: 510 PSGSGTSK 517


>gi|193083157 nuclear assembly factor 1 homolog isoform a [Homo
           sapiens]
          Length = 494

 Score = 31.2 bits (69), Expect = 0.37
 Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 2/27 (7%)

Query: 68  RYP-QTPILDSHNFPGLRQPHSPGPPP 93
           +YP   P+ D HNFP LR P  P PPP
Sbjct: 421 QYPFPLPVFDMHNFP-LRPPPPPPPPP 446


>gi|37595528 polyhomeotic-like 2 isoform a [Homo sapiens]
          Length = 858

 Score = 31.2 bits (69), Expect = 0.37
 Identities = 35/110 (31%), Positives = 43/110 (39%), Gaps = 10/110 (9%)

Query: 3   LRFSQATRVTRSSMVHLQVALSPCRTV-TLSIALGKVASPLRTGTPVGTRNSSLRDTTTR 61
           L  SQA    R+ M+      +P  TV T+   LG   SP R  TP   +N +LR   T 
Sbjct: 179 LTASQAQMYLRAQML----IFTPTATVATVQPELG-TGSPARPPTPAQVQNLTLRTQQTP 233

Query: 62  HFQGRNRYPQTPILDS---HNFPGLRQPHSPGPPPRAPAGSGSGAGRREG 108
                   P  P+L S      PG  QP  P P         S AG + G
Sbjct: 234 AAAASGPTPTQPVLPSLALKPTPGGSQP-LPTPAQSRNTAQASPAGAKPG 282


>gi|13994287 BTE-binding protein 4 [Homo sapiens]
          Length = 252

 Score = 30.8 bits (68), Expect = 0.49
 Identities = 12/19 (63%), Positives = 13/19 (68%)

Query: 86  PHSPGPPPRAPAGSGSGAG 104
           P +PGPPP  PA SG G G
Sbjct: 53  PGTPGPPPPPPAASGPGPG 71


>gi|188497689 chromatin licensing and DNA replication factor 1 [Homo
           sapiens]
          Length = 546

 Score = 30.8 bits (68), Expect = 0.49
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 84  RQPHSPGPPPRAPAGSGSGAGRREGAEFARSRGKEKRGVRALRSLRILPQILPQLSSLAE 143
           R P    P  RAPA + SG+ +R  A    + G+++    A R LR+    +   S+   
Sbjct: 28  RTPSPARPALRAPASATSGSRKR--ARPPAAPGRDQARPPARRRLRLSVDEVSSPSTPEA 85

Query: 144 PDAPSC 149
           PD P+C
Sbjct: 86  PDIPAC 91


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.132    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,977,016
Number of Sequences: 37866
Number of extensions: 403941
Number of successful extensions: 4006
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 203
Number of HSP's that attempted gapping in prelim test: 3671
Number of HSP's gapped (non-prelim): 525
length of query: 155
length of database: 18,247,518
effective HSP length: 93
effective length of query: 62
effective length of database: 14,725,980
effective search space: 913010760
effective search space used: 913010760
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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