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Search of human proteins with 239744518
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744518 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
(155 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755701 PREDICTED: hypothetical protein [Homo sapiens] 310 4e-85
gi|239750211 PREDICTED: hypothetical protein [Homo sapiens] 310 4e-85
gi|239744518 PREDICTED: hypothetical protein isoform 2 [Homo sap... 310 4e-85
gi|239744520 PREDICTED: hypothetical protein isoform 1 [Homo sap... 96 9e-21
gi|239752239 PREDICTED: hypothetical protein XP_002348169 [Homo ... 35 0.034
gi|239746759 PREDICTED: hypothetical protein XP_002343836 [Homo ... 35 0.034
gi|78499633 phospholipase C, eta 2 [Homo sapiens] 33 0.13
gi|169204928 PREDICTED: hypothetical protein [Homo sapiens] 33 0.13
gi|239753399 PREDICTED: hypothetical protein [Homo sapiens] 33 0.13
gi|113423861 PREDICTED: hypothetical protein [Homo sapiens] 33 0.13
gi|113423437 PREDICTED: hypothetical protein [Homo sapiens] 33 0.13
gi|239741865 PREDICTED: hypothetical protein XP_002342328 [Homo ... 33 0.13
gi|50593110 5' nucleotidase, cytosolic IB isoform 1 [Homo sapiens] 33 0.13
gi|239755298 PREDICTED: hypothetical protein [Homo sapiens] 32 0.17
gi|239749793 PREDICTED: hypothetical protein XP_002347163 [Homo ... 32 0.17
gi|239744053 PREDICTED: hypothetical protein XP_002343026 [Homo ... 32 0.17
gi|239756609 PREDICTED: similar to hCG2045429 [Homo sapiens] 32 0.22
gi|239751097 PREDICTED: similar to hCG2045429 [Homo sapiens] 32 0.22
gi|169210070 PREDICTED: similar to hCG2045429 [Homo sapiens] 32 0.22
gi|239749498 PREDICTED: hypothetical protein [Homo sapiens] 32 0.29
gi|239743634 PREDICTED: hypothetical protein XP_002342919 [Homo ... 32 0.29
gi|62241026 doublesex and mab-3 related transcription factor 1 [... 32 0.29
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 32 0.29
gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo ... 31 0.37
gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo ... 31 0.37
gi|34452723 gamma-aminobutyric acid A receptor, alpha 4 precurso... 31 0.37
gi|193083157 nuclear assembly factor 1 homolog isoform a [Homo s... 31 0.37
gi|37595528 polyhomeotic-like 2 isoform a [Homo sapiens] 31 0.37
gi|13994287 BTE-binding protein 4 [Homo sapiens] 31 0.49
gi|188497689 chromatin licensing and DNA replication factor 1 [H... 31 0.49
>gi|239755701 PREDICTED: hypothetical protein [Homo sapiens]
Length = 155
Score = 310 bits (793), Expect = 4e-85
Identities = 155/155 (100%), Positives = 155/155 (100%)
Query: 1 MVLRFSQATRVTRSSMVHLQVALSPCRTVTLSIALGKVASPLRTGTPVGTRNSSLRDTTT 60
MVLRFSQATRVTRSSMVHLQVALSPCRTVTLSIALGKVASPLRTGTPVGTRNSSLRDTTT
Sbjct: 1 MVLRFSQATRVTRSSMVHLQVALSPCRTVTLSIALGKVASPLRTGTPVGTRNSSLRDTTT 60
Query: 61 RHFQGRNRYPQTPILDSHNFPGLRQPHSPGPPPRAPAGSGSGAGRREGAEFARSRGKEKR 120
RHFQGRNRYPQTPILDSHNFPGLRQPHSPGPPPRAPAGSGSGAGRREGAEFARSRGKEKR
Sbjct: 61 RHFQGRNRYPQTPILDSHNFPGLRQPHSPGPPPRAPAGSGSGAGRREGAEFARSRGKEKR 120
Query: 121 GVRALRSLRILPQILPQLSSLAEPDAPSCIQKELS 155
GVRALRSLRILPQILPQLSSLAEPDAPSCIQKELS
Sbjct: 121 GVRALRSLRILPQILPQLSSLAEPDAPSCIQKELS 155
>gi|239750211 PREDICTED: hypothetical protein [Homo sapiens]
Length = 155
Score = 310 bits (793), Expect = 4e-85
Identities = 155/155 (100%), Positives = 155/155 (100%)
Query: 1 MVLRFSQATRVTRSSMVHLQVALSPCRTVTLSIALGKVASPLRTGTPVGTRNSSLRDTTT 60
MVLRFSQATRVTRSSMVHLQVALSPCRTVTLSIALGKVASPLRTGTPVGTRNSSLRDTTT
Sbjct: 1 MVLRFSQATRVTRSSMVHLQVALSPCRTVTLSIALGKVASPLRTGTPVGTRNSSLRDTTT 60
Query: 61 RHFQGRNRYPQTPILDSHNFPGLRQPHSPGPPPRAPAGSGSGAGRREGAEFARSRGKEKR 120
RHFQGRNRYPQTPILDSHNFPGLRQPHSPGPPPRAPAGSGSGAGRREGAEFARSRGKEKR
Sbjct: 61 RHFQGRNRYPQTPILDSHNFPGLRQPHSPGPPPRAPAGSGSGAGRREGAEFARSRGKEKR 120
Query: 121 GVRALRSLRILPQILPQLSSLAEPDAPSCIQKELS 155
GVRALRSLRILPQILPQLSSLAEPDAPSCIQKELS
Sbjct: 121 GVRALRSLRILPQILPQLSSLAEPDAPSCIQKELS 155
>gi|239744518 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 155
Score = 310 bits (793), Expect = 4e-85
Identities = 155/155 (100%), Positives = 155/155 (100%)
Query: 1 MVLRFSQATRVTRSSMVHLQVALSPCRTVTLSIALGKVASPLRTGTPVGTRNSSLRDTTT 60
MVLRFSQATRVTRSSMVHLQVALSPCRTVTLSIALGKVASPLRTGTPVGTRNSSLRDTTT
Sbjct: 1 MVLRFSQATRVTRSSMVHLQVALSPCRTVTLSIALGKVASPLRTGTPVGTRNSSLRDTTT 60
Query: 61 RHFQGRNRYPQTPILDSHNFPGLRQPHSPGPPPRAPAGSGSGAGRREGAEFARSRGKEKR 120
RHFQGRNRYPQTPILDSHNFPGLRQPHSPGPPPRAPAGSGSGAGRREGAEFARSRGKEKR
Sbjct: 61 RHFQGRNRYPQTPILDSHNFPGLRQPHSPGPPPRAPAGSGSGAGRREGAEFARSRGKEKR 120
Query: 121 GVRALRSLRILPQILPQLSSLAEPDAPSCIQKELS 155
GVRALRSLRILPQILPQLSSLAEPDAPSCIQKELS
Sbjct: 121 GVRALRSLRILPQILPQLSSLAEPDAPSCIQKELS 155
>gi|239744520 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 95
Score = 96.3 bits (238), Expect = 9e-21
Identities = 50/56 (89%), Positives = 50/56 (89%)
Query: 1 MVLRFSQATRVTRSSMVHLQVALSPCRTVTLSIALGKVASPLRTGTPVGTRNSSLR 56
MVLRFSQATRVTRSSMVHLQVALSPCRTVTLSIALGKVASPLRTGTPV S R
Sbjct: 1 MVLRFSQATRVTRSSMVHLQVALSPCRTVTLSIALGKVASPLRTGTPVDEEQGSCR 56
>gi|239752239 PREDICTED: hypothetical protein XP_002348169 [Homo
sapiens]
Length = 150
Score = 34.7 bits (78), Expect = 0.034
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Query: 53 SSLRDTTTRHFQGRNRYPQTPILDSHN---FPGLRQPHSPGPPPRAPAGSGSGAGRREGA 109
SS R + + ++ P + +L S + + G R P +PGP P A GSG G G R A
Sbjct: 31 SSKRSRCSPRWMLSSQSPTSNLLQSCSGFCWKGRRGPGAPGPGPDAGEGSGDGEGERLRA 90
Query: 110 EFARSRGKEKRGVRALRSLRILPQILPQLSSLAEP 144
R+ + G + L L +L +S P
Sbjct: 91 LTLRTTKRTSLGSCGMERLDDLRMLLRWATSWQGP 125
>gi|239746759 PREDICTED: hypothetical protein XP_002343836 [Homo
sapiens]
Length = 150
Score = 34.7 bits (78), Expect = 0.034
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Query: 53 SSLRDTTTRHFQGRNRYPQTPILDSHN---FPGLRQPHSPGPPPRAPAGSGSGAGRREGA 109
SS R + + ++ P + +L S + + G R P +PGP P A GSG G G R A
Sbjct: 31 SSKRSRCSPRWMLSSQSPTSNLLQSCSGFCWKGRRGPGAPGPGPDAGEGSGDGEGERLRA 90
Query: 110 EFARSRGKEKRGVRALRSLRILPQILPQLSSLAEP 144
R+ + G + L L +L +S P
Sbjct: 91 LTLRTTKRTSLGSCGMERLDDLRMLLRWATSWQGP 125
>gi|78499633 phospholipase C, eta 2 [Homo sapiens]
Length = 1416
Score = 32.7 bits (73), Expect = 0.13
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 14/62 (22%)
Query: 86 PHSPGPPPRAPAGSGSGAGRREGAEFARSRGKEKRGVRALRSLRILPQILPQLSSLAEPD 145
P PGP P APA G G+G R R L + R LP L L ++AE
Sbjct: 965 PPGPGPAPEAPAQEGPGSG-------------SPRDTRPLSTQRPLPP-LCSLETIAEEP 1010
Query: 146 AP 147
AP
Sbjct: 1011 AP 1012
>gi|169204928 PREDICTED: hypothetical protein [Homo sapiens]
Length = 215
Score = 32.7 bits (73), Expect = 0.13
Identities = 25/71 (35%), Positives = 30/71 (42%), Gaps = 13/71 (18%)
Query: 66 RNRYPQTPILDSHNFPGLRQPHSPGPPPRAPAGSGS----------GAGRREGAEFARSR 115
R R + D P P P P P AP G+ G GRREG AR R
Sbjct: 118 RPRAETAAVTDGVTSPRAWPPPPPPPLPPAPTRHGNTDVRASQPIAGCGRREG---ARWR 174
Query: 116 GKEKRGVRALR 126
G+ +R +ALR
Sbjct: 175 GRGQRQAKALR 185
>gi|239753399 PREDICTED: hypothetical protein [Homo sapiens]
Length = 165
Score = 32.7 bits (73), Expect = 0.13
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 13/56 (23%)
Query: 66 RNRYPQTPILDSHNFPGLRQPHSPGPPPRAPAGSGSGAGRREGAEFARSRGKEKRG 121
R+ YP+ P R+ HSP PPP +G GAE RG+E+RG
Sbjct: 9 RHPYPKV----GSRIPSNRKCHSPPPPP---------SGTLTGAECGGGRGRERRG 51
>gi|113423861 PREDICTED: hypothetical protein [Homo sapiens]
Length = 215
Score = 32.7 bits (73), Expect = 0.13
Identities = 25/71 (35%), Positives = 30/71 (42%), Gaps = 13/71 (18%)
Query: 66 RNRYPQTPILDSHNFPGLRQPHSPGPPPRAPAGSGS----------GAGRREGAEFARSR 115
R R + D P P P P P AP G+ G GRREG AR R
Sbjct: 118 RPRAETAAVTDGVTSPRAWPPPPPPPLPPAPTRHGNTDVRASQPIAGCGRREG---ARWR 174
Query: 116 GKEKRGVRALR 126
G+ +R +ALR
Sbjct: 175 GRGQRQAKALR 185
>gi|113423437 PREDICTED: hypothetical protein [Homo sapiens]
Length = 215
Score = 32.7 bits (73), Expect = 0.13
Identities = 25/71 (35%), Positives = 30/71 (42%), Gaps = 13/71 (18%)
Query: 66 RNRYPQTPILDSHNFPGLRQPHSPGPPPRAPAGSGS----------GAGRREGAEFARSR 115
R R + D P P P P P AP G+ G GRREG AR R
Sbjct: 118 RPRAETAAVTDGVTSPRAWPPPPPPPLPPAPTRHGNTDVRASQPIAGCGRREG---ARWR 174
Query: 116 GKEKRGVRALR 126
G+ +R +ALR
Sbjct: 175 GRGQRQAKALR 185
>gi|239741865 PREDICTED: hypothetical protein XP_002342328 [Homo
sapiens]
Length = 165
Score = 32.7 bits (73), Expect = 0.13
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 13/56 (23%)
Query: 66 RNRYPQTPILDSHNFPGLRQPHSPGPPPRAPAGSGSGAGRREGAEFARSRGKEKRG 121
R+ YP+ P R+ HSP PPP +G GAE RG+E+RG
Sbjct: 9 RHPYPKV----GSRIPSNRKCHSPPPPP---------SGTLTGAECGGGRGRERRG 51
>gi|50593110 5' nucleotidase, cytosolic IB isoform 1 [Homo sapiens]
Length = 610
Score = 32.7 bits (73), Expect = 0.13
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 11/86 (12%)
Query: 22 ALSPCRTVTLSIAL------GKVASPLRTGTPVGTRNSSLRDTTTRHFQGRNRYPQTPIL 75
AL PC T+ + I + G+ + +R G++ SSLR T +R + R+++ +
Sbjct: 73 ALGPCHTIRIYIHMCLLWEQGQQITMMR-----GSQESSLRKTDSRGYLVRSQWSRISRS 127
Query: 76 DSHNFPGLRQPHSPGPPPRAPAGSGS 101
S P + +P S + P+ S S
Sbjct: 128 PSTKAPSIDEPRSRNTSAKLPSSSTS 153
>gi|239755298 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 32.3 bits (72), Expect = 0.17
Identities = 32/119 (26%), Positives = 43/119 (36%), Gaps = 14/119 (11%)
Query: 13 RSSMVHLQVALSPCRTVTLSIALGKVASPLRTGTPVGTRNSSLRDTTTRHFQGRNRYPQT 72
R S V ++ ++P T + LGK PLR+ G R ++ R T + R
Sbjct: 100 RESRVPVEAGVTPKGTNARACVLGKGGPPLRSPGSSGRRQAARRGAGTGLYPAAQRRAPA 159
Query: 73 PILDSHNFPGLRQP----------HSPGPPPRAPAGSGSGAGRREGAEFARSRGKEKRG 121
P L P R+P SPG P PAG + ARS G
Sbjct: 160 P-LRPCAIPAPRRPAAAARLGSAARSPGAP---PAGRSLAQPHPQSCPLARSPAYRSTG 214
Score = 26.6 bits (57), Expect = 9.2
Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Query: 90 GPPPRAPAGSGSGAGRREGAEFARSRGKEKRGVRALRSLRI----LPQILPQLSSLA-EP 144
GPP R+P SG R GA ++R LR I P +L S A P
Sbjct: 126 GPPLRSPGSSGRRQAARRGAGTGLYPAAQRRAPAPLRPCAIPAPRRPAAAARLGSAARSP 185
Query: 145 DAP 147
AP
Sbjct: 186 GAP 188
>gi|239749793 PREDICTED: hypothetical protein XP_002347163 [Homo
sapiens]
Length = 250
Score = 32.3 bits (72), Expect = 0.17
Identities = 32/119 (26%), Positives = 43/119 (36%), Gaps = 14/119 (11%)
Query: 13 RSSMVHLQVALSPCRTVTLSIALGKVASPLRTGTPVGTRNSSLRDTTTRHFQGRNRYPQT 72
R S V ++ ++P T + LGK PLR+ G R ++ R T + R
Sbjct: 53 RESRVPVEAGVTPKGTNARACVLGKGGPPLRSPGSSGRRQAARRGAGTGLYPAAQRRAPA 112
Query: 73 PILDSHNFPGLRQP----------HSPGPPPRAPAGSGSGAGRREGAEFARSRGKEKRG 121
P L P R+P SPG P PAG + ARS G
Sbjct: 113 P-LRPCAIPAPRRPAAAARLGSAARSPGAP---PAGRSLAQPHPQSCPLARSPAYRSTG 167
Score = 26.6 bits (57), Expect = 9.2
Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Query: 90 GPPPRAPAGSGSGAGRREGAEFARSRGKEKRGVRALRSLRI----LPQILPQLSSLA-EP 144
GPP R+P SG R GA ++R LR I P +L S A P
Sbjct: 79 GPPLRSPGSSGRRQAARRGAGTGLYPAAQRRAPAPLRPCAIPAPRRPAAAARLGSAARSP 138
Query: 145 DAP 147
AP
Sbjct: 139 GAP 141
>gi|239744053 PREDICTED: hypothetical protein XP_002343026 [Homo
sapiens]
Length = 250
Score = 32.3 bits (72), Expect = 0.17
Identities = 32/119 (26%), Positives = 43/119 (36%), Gaps = 14/119 (11%)
Query: 13 RSSMVHLQVALSPCRTVTLSIALGKVASPLRTGTPVGTRNSSLRDTTTRHFQGRNRYPQT 72
R S V ++ ++P T + LGK PLR+ G R ++ R T + R
Sbjct: 53 RESRVPVEAGVTPKGTNARACVLGKGGPPLRSPGSSGRRQAARRGAGTGLYPAAQRRAPA 112
Query: 73 PILDSHNFPGLRQP----------HSPGPPPRAPAGSGSGAGRREGAEFARSRGKEKRG 121
P L P R+P SPG P PAG + ARS G
Sbjct: 113 P-LRPCAIPAPRRPAAAARLGSAARSPGAP---PAGRSLAQPHPQSCPLARSPAYRSTG 167
Score = 26.6 bits (57), Expect = 9.2
Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Query: 90 GPPPRAPAGSGSGAGRREGAEFARSRGKEKRGVRALRSLRI----LPQILPQLSSLA-EP 144
GPP R+P SG R GA ++R LR I P +L S A P
Sbjct: 79 GPPLRSPGSSGRRQAARRGAGTGLYPAAQRRAPAPLRPCAIPAPRRPAAAARLGSAARSP 138
Query: 145 DAP 147
AP
Sbjct: 139 GAP 141
>gi|239756609 PREDICTED: similar to hCG2045429 [Homo sapiens]
Length = 178
Score = 32.0 bits (71), Expect = 0.22
Identities = 18/64 (28%), Positives = 24/64 (37%)
Query: 60 TRHFQGRNRYPQTPILDSHNFPGLRQPHSPGPPPRAPAGSGSGAGRREGAEFARSRGKEK 119
T H G +R + + P L P P P GSG G G E E+ + +
Sbjct: 89 TPHTAGSSRAFRDSLGPRERSPALSPTPLPHADPARPPGSGPGRGHGEAVEYLEKEERRE 148
Query: 120 RGVR 123
R R
Sbjct: 149 RSTR 152
>gi|239751097 PREDICTED: similar to hCG2045429 [Homo sapiens]
Length = 178
Score = 32.0 bits (71), Expect = 0.22
Identities = 18/64 (28%), Positives = 24/64 (37%)
Query: 60 TRHFQGRNRYPQTPILDSHNFPGLRQPHSPGPPPRAPAGSGSGAGRREGAEFARSRGKEK 119
T H G +R + + P L P P P GSG G G E E+ + +
Sbjct: 89 TPHTAGSSRAFRDSLGPRERSPALSPTPLPHADPARPPGSGPGRGHGEAVEYLEKEERRE 148
Query: 120 RGVR 123
R R
Sbjct: 149 RSTR 152
>gi|169210070 PREDICTED: similar to hCG2045429 [Homo sapiens]
Length = 178
Score = 32.0 bits (71), Expect = 0.22
Identities = 18/64 (28%), Positives = 24/64 (37%)
Query: 60 TRHFQGRNRYPQTPILDSHNFPGLRQPHSPGPPPRAPAGSGSGAGRREGAEFARSRGKEK 119
T H G +R + + P L P P P GSG G G E E+ + +
Sbjct: 89 TPHTAGSSRAFRDSLGPRERSPALSPTPLPHADPARPPGSGPGRGHGEAVEYLEKEERRE 148
Query: 120 RGVR 123
R R
Sbjct: 149 RSTR 152
>gi|239749498 PREDICTED: hypothetical protein [Homo sapiens]
Length = 692
Score = 31.6 bits (70), Expect = 0.29
Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 12/67 (17%)
Query: 82 GLRQPHSPGPPPRAPAGSGSGAGRR-EGAEFAR------SR----GKEKRGVRALRS-LR 129
GL +P P P AG+G+GA +R EG AR SR KE G RA R+ L
Sbjct: 557 GLAALRTPPPAPAGNAGTGTGARKRPEGGRGARYPCGSSSRVAVPSKEPAGPRAQRNLLP 616
Query: 130 ILPQILP 136
+LP + P
Sbjct: 617 LLPLLAP 623
>gi|239743634 PREDICTED: hypothetical protein XP_002342919 [Homo
sapiens]
Length = 692
Score = 31.6 bits (70), Expect = 0.29
Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 12/67 (17%)
Query: 82 GLRQPHSPGPPPRAPAGSGSGAGRR-EGAEFAR------SR----GKEKRGVRALRS-LR 129
GL +P P P AG+G+GA +R EG AR SR KE G RA R+ L
Sbjct: 557 GLAALRTPPPAPAGNAGTGTGARKRPEGGRGARYPCGSSSRVAVPSKEPAGPRAQRNLLP 616
Query: 130 ILPQILP 136
+LP + P
Sbjct: 617 LLPLLAP 623
>gi|62241026 doublesex and mab-3 related transcription factor 1
[Homo sapiens]
Length = 373
Score = 31.6 bits (70), Expect = 0.29
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 86 PHSPGPPPRAPAGS-GSGAGRREGAEFARSRGKEKRG 121
PH+PG PP+ AG G +G GA S G RG
Sbjct: 17 PHAPGVPPQGRAGGFGKASGALVGAASGSSAGGSSRG 53
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 31.6 bits (70), Expect = 0.29
Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 8/113 (7%)
Query: 41 PLRTGTPVGTRNSSLRDTTTRHFQGRNRYPQTPILDSHNFPGLRQPHSPGPPPRAPAGSG 100
P + +PV R S +++H +G + T S P + HSP P PRAP S
Sbjct: 641 PKQRSSPVTKRRSP--SLSSKHRKGSSPSRSTREARS---PQPNKRHSPSPRPRAPQTSS 695
Query: 101 SGAGRREGAEFA-RSRGKEKRGVRALRSLRILPQILPQLSSLAEPDAPSCIQK 152
S R GA + + R R +R + P+ P+ A +P +++
Sbjct: 696 SPPPVRRGASSSPQRRQSPSPSTRPIRRVSRTPE--PKKIKKAASPSPQSVRR 746
>gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo
sapiens]
Length = 647
Score = 31.2 bits (69), Expect = 0.37
Identities = 27/68 (39%), Positives = 32/68 (47%), Gaps = 11/68 (16%)
Query: 82 GLRQPHSPGPPPRAPAG--------SGSGAGRR-EGAEFARSRGKEKRGVRALRSLRILP 132
G RQ PGP RAP G +GS AGR + +R+R + RG LRS R P
Sbjct: 433 GRRQDPEPGP--RAPRGGPASSGWHAGSAAGRGWDPGGGSRARRRAARGRGCLRSARSSP 490
Query: 133 QILPQLSS 140
P SS
Sbjct: 491 HARPLGSS 498
>gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo
sapiens]
Length = 647
Score = 31.2 bits (69), Expect = 0.37
Identities = 27/68 (39%), Positives = 32/68 (47%), Gaps = 11/68 (16%)
Query: 82 GLRQPHSPGPPPRAPAG--------SGSGAGRR-EGAEFARSRGKEKRGVRALRSLRILP 132
G RQ PGP RAP G +GS AGR + +R+R + RG LRS R P
Sbjct: 433 GRRQDPEPGP--RAPRGGPASSGWHAGSAAGRGWDPGGGSRARRRAARGRGCLRSARSSP 490
Query: 133 QILPQLSS 140
P SS
Sbjct: 491 HARPLGSS 498
>gi|34452723 gamma-aminobutyric acid A receptor, alpha 4 precursor
[Homo sapiens]
Length = 554
Score = 31.2 bits (69), Expect = 0.37
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 39 ASPLRTGTPVGTRNSSLRDTTTRH-FQGRNRYPQTPILDSHNFPGLRQPHSPGPPPRAPA 97
ASP T R +S+ +TRH F R + +T + N G S PPP AP
Sbjct: 454 ASPTSIRTGYMPRKASVGSASTRHVFGSRLQRIKTTV----NTIGATGKLSATPPPSAPP 509
Query: 98 GSGSGAGR 105
SGSG +
Sbjct: 510 PSGSGTSK 517
>gi|193083157 nuclear assembly factor 1 homolog isoform a [Homo
sapiens]
Length = 494
Score = 31.2 bits (69), Expect = 0.37
Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 68 RYP-QTPILDSHNFPGLRQPHSPGPPP 93
+YP P+ D HNFP LR P P PPP
Sbjct: 421 QYPFPLPVFDMHNFP-LRPPPPPPPPP 446
>gi|37595528 polyhomeotic-like 2 isoform a [Homo sapiens]
Length = 858
Score = 31.2 bits (69), Expect = 0.37
Identities = 35/110 (31%), Positives = 43/110 (39%), Gaps = 10/110 (9%)
Query: 3 LRFSQATRVTRSSMVHLQVALSPCRTV-TLSIALGKVASPLRTGTPVGTRNSSLRDTTTR 61
L SQA R+ M+ +P TV T+ LG SP R TP +N +LR T
Sbjct: 179 LTASQAQMYLRAQML----IFTPTATVATVQPELG-TGSPARPPTPAQVQNLTLRTQQTP 233
Query: 62 HFQGRNRYPQTPILDS---HNFPGLRQPHSPGPPPRAPAGSGSGAGRREG 108
P P+L S PG QP P P S AG + G
Sbjct: 234 AAAASGPTPTQPVLPSLALKPTPGGSQP-LPTPAQSRNTAQASPAGAKPG 282
>gi|13994287 BTE-binding protein 4 [Homo sapiens]
Length = 252
Score = 30.8 bits (68), Expect = 0.49
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 86 PHSPGPPPRAPAGSGSGAG 104
P +PGPPP PA SG G G
Sbjct: 53 PGTPGPPPPPPAASGPGPG 71
>gi|188497689 chromatin licensing and DNA replication factor 1 [Homo
sapiens]
Length = 546
Score = 30.8 bits (68), Expect = 0.49
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 84 RQPHSPGPPPRAPAGSGSGAGRREGAEFARSRGKEKRGVRALRSLRILPQILPQLSSLAE 143
R P P RAPA + SG+ +R A + G+++ A R LR+ + S+
Sbjct: 28 RTPSPARPALRAPASATSGSRKR--ARPPAAPGRDQARPPARRRLRLSVDEVSSPSTPEA 85
Query: 144 PDAPSC 149
PD P+C
Sbjct: 86 PDIPAC 91
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.132 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,977,016
Number of Sequences: 37866
Number of extensions: 403941
Number of successful extensions: 4006
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 203
Number of HSP's that attempted gapping in prelim test: 3671
Number of HSP's gapped (non-prelim): 525
length of query: 155
length of database: 18,247,518
effective HSP length: 93
effective length of query: 62
effective length of database: 14,725,980
effective search space: 913010760
effective search space used: 913010760
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.