Guide to the Human Genome
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Name: LOC100288412 Sequence: fasta or formatted (165aa) NCBI GI: 239741865
Description:

PREDICTED: hypothetical protein XP_002342328

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.2         25           5
 C cysteine            1.8          3           1
 D aspartate           1.8          3           1
 E glutamate           4.2          7           1
 F phenylalanine       1.2          2           1
 G glycine            15.8         26           3
 H histidine           4.2          7           2
 I isoleucine          1.2          2           1
 K lysine              4.2          7           2
 L leucine             3.0          5           1
 M methionine          0.6          1           1
 N asparagine          1.2          2           1
 P proline            12.1         20           5
 Q glutamine           0.6          1           1
 R arginine           15.2         25           3
 S serine              6.7         11           1
 T threonine           7.3         12           1
 V valine              3.0          5           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342328 
LOC100292853          1.000   PREDICTED: hypothetical protein 
LOC100292035          0.075   PREDICTED: hypothetical protein XP_002345623 
AGAP2                 0.062   centaurin, gamma 1 isoform PIKE-L 
MAGI2                 0.059   membrane associated guanylate kinase, WW and PDZ dom...
FLJ37078              0.059   hypothetical protein LOC222183 
RBM15B                0.050   RNA binding motif protein 15B 
LOC100287063          0.050   PREDICTED: hypothetical protein XP_002342368 
LCE4A                 0.047   late cornified envelope 4A 
NPAS3                 0.047   neuronal PAS domain protein 3 isoform 2 
NPAS3                 0.047   neuronal PAS domain protein 3 isoform 1 
LOC100287499          0.047   PREDICTED: hypothetical protein 
LOC100287499          0.047   PREDICTED: hypothetical protein XP_002343643 
XYLT1                 0.044   xylosyltransferase I 
LOC100292370          0.044   PREDICTED: hypothetical protein 
LOC100292447          0.044   PREDICTED: similar to coiled-coil domain containing...
LOC100132369          0.044   PREDICTED: hypothetical protein 
LOC100132369          0.044   PREDICTED: hypothetical protein 
LOC100132369          0.044   PREDICTED: hypothetical protein 
EN1                   0.044   engrailed homeobox 1 
FLJ31945              0.044   PREDICTED: hypothetical protein 
LOC100128142          0.044   PREDICTED: hypothetical protein 
LOC100128142          0.044   PREDICTED: similar to RIKEN cDNA E130309D14 
TTMA                  0.044   hypothetical protein LOC645369 
EID2                  0.044   CREBBP/EP300 inhibitor 2 
LOC100292934          0.041   PREDICTED: hypothetical protein 
LOC100287063          0.041   PREDICTED: hypothetical protein 
LOC100290359          0.041   PREDICTED: hypothetical protein XP_002346414 
LOC100287202          0.041   PREDICTED: hypothetical protein XP_002342114 
GDF7                  0.041   growth differentiation factor 7 preproprotein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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