Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC643153 Sequence: fasta or formatted (215aa) NCBI GI: 113423437
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {215aa} PREDICTED: hypothetical protein
alt mRNA {215aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.0         30           4
 C cysteine            1.9          4           1
 D aspartate           1.9          4           1
 E glutamate           3.3          7           1
 F phenylalanine       1.9          4           1
 G glycine            11.2         24           1
 H histidine           0.9          2           1
 I isoleucine          1.9          4           2
 K lysine              2.8          6           2
 L leucine             4.2          9           2
 M methionine          1.4          3           1
 N asparagine          0.5          1           1
 P proline            15.3         33           7
 Q glutamine           3.3          7           1
 R arginine           15.8         34           3
 S serine              7.0         15           2
 T threonine           5.1         11           1
 V valine              5.1         11           1
 W tryptophan          2.8          6           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC643153             1.000   PREDICTED: hypothetical protein 
LOC643153             1.000   PREDICTED: hypothetical protein 
SYNPO                 0.059   synaptopodin isoform A 
LOC100293933          0.049   PREDICTED: hypothetical protein 
LOC100290206          0.049   PREDICTED: hypothetical protein XP_002347062 
LOC100288573          0.049   PREDICTED: hypothetical protein XP_002343799 
LOC100287139          0.049   PREDICTED: hypothetical protein XP_002342915 
ANKRD33B              0.047   PREDICTED: ankyrin repeat domain 33B 
TAF4                  0.047   TBP-associated factor 4 
SCAF1                 0.044   SR-related CTD-associated factor 1 
ESPN                  0.044   espin 
FLJ37078              0.044   hypothetical protein LOC222183 
LOC100292845          0.042   PREDICTED: hypothetical protein 
LOC100289230          0.042   PREDICTED: hypothetical protein XP_002342600 
BPTF                  0.040   bromodomain PHD finger transcription factor isoform ...
BPTF                  0.040   bromodomain PHD finger transcription factor isoform ...
LMTK3                 0.040   lemur tyrosine kinase 3 
LOC729370             0.040   PREDICTED: hypothetical protein 
LOC100129852          0.037   PREDICTED: hypothetical protein 
LOC100129852          0.037   PREDICTED: hypothetical protein 
LOC100129852          0.037   PREDICTED: hypothetical protein 
LOC100293268          0.035   PREDICTED: hypothetical protein 
USP51                 0.035   ubiquitin specific protease 51 
SAMD1                 0.035   sterile alpha motif domain containing 1 
WIPF2                 0.035   WIRE protein 
SH3BP1                0.035   SH3-domain binding protein 1 
KIAA0323              0.033   hypothetical protein LOC23351 
FLJ34208              0.033   PREDICTED: hypothetical protein LOC401106 
FLJ34208              0.033   PREDICTED: hypothetical protein LOC401106 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press