Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100128095 Sequence: fasta or formatted (95aa) NCBI GI: 239744520
Description:

PREDICTED: hypothetical protein isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {155aa} PREDICTED: hypothetical protein isoform 2
alt prot {155aa} PREDICTED: hypothetical protein
alt prot {155aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            17.9         17           3
 C cysteine            3.2          3           1
 D aspartate           4.2          4           2
 E glutamate           4.2          4           2
 F phenylalanine       3.2          3           1
 G glycine             5.3          5           1
 H histidine           2.1          2           1
 I isoleucine          1.1          1           1
 K lysine              1.1          1           1
 L leucine            10.5         10           1
 M methionine          3.2          3           1
 N asparagine          0.0          0           0
 P proline             4.2          4           1
 Q glutamine           3.2          3           1
 R arginine            8.4          8           2
 S serine              9.5          9           2
 T threonine           8.4          8           1
 V valine             10.5         10           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein isoform 1 
LOC100128095          0.447   PREDICTED: hypothetical protein 
LOC100128095          0.447   PREDICTED: hypothetical protein 
LOC100128095          0.447   PREDICTED: hypothetical protein isoform 2 
LOC729915             0.019   PREDICTED: similar to Putative POM121-like protein ...
LOC100133280          0.019   PREDICTED: similar to Putative POM121-like protein ...
FBN3                  0.013   fibrillin 3 precursor 
ARX                   0.013   aristaless related homeobox 
MLL4                  0.006   myeloid/lymphoid or mixed-lineage leukemia 4 
FAM48B1               0.006   hypothetical protein LOC100130302 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press