Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100289962 Sequence: fasta or formatted (150aa) NCBI GI: 239752239
Description:

PREDICTED: hypothetical protein XP_002348169

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         11           3
 C cysteine            5.3          8           1
 D aspartate           2.7          4           2
 E glutamate           2.7          4           1
 F phenylalanine       1.3          2           1
 G glycine            13.3         20           2
 H histidine           0.7          1           1
 I isoleucine          0.7          1           1
 K lysine              2.7          4           1
 L leucine             8.7         13           2
 M methionine          3.3          5           1
 N asparagine          1.3          2           1
 P proline            10.0         15           3
 Q glutamine           2.7          4           1
 R arginine           10.0         15           2
 S serine             15.3         23           2
 T threonine           6.0          9           2
 V valine              2.0          3           1
 W tryptophan          4.0          6           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002348169 
LOC100289014          1.000   PREDICTED: hypothetical protein XP_002343836 
LOC100128095          0.034   PREDICTED: hypothetical protein 
LOC100128095          0.034   PREDICTED: hypothetical protein 
LOC100128095          0.034   PREDICTED: hypothetical protein isoform 2 
LOC652586             0.027   PREDICTED: similar to facioscapulohumeral muscular ...
LAG3                  0.027   lymphocyte-activation protein 3 precursor 
HOXD9                 0.023   homeobox D9 
DMRTA2                0.023   DMRT-like family A2 
C15orf52              0.023   hypothetical protein LOC388115 
PLCH2                 0.023   phospholipase C, eta 2 
C6orf25               0.023   G6B protein isoform G6b-G precursor 
RBM27                 0.023   RNA binding motif protein 27 
NEURL4                0.020   neuralized homolog 4 isoform 1 
NEURL4                0.020   neuralized homolog 4 isoform 2 
LOC100293922          0.020   PREDICTED: hypothetical protein 
LOC100291358          0.020   PREDICTED: hypothetical protein XP_002347390 
MESP2                 0.020   mesoderm posterior 2 homolog 
ACBD3                 0.020   acyl-Coenzyme A binding domain containing 3 
MTHFSD                0.017   methenyltetrahydrofolate synthetase domain containi...
MTHFSD                0.017   methenyltetrahydrofolate synthetase domain containi...
MTHFSD                0.017   methenyltetrahydrofolate synthetase domain containi...
MTHFSD                0.017   methenyltetrahydrofolate synthetase domain containi...
MTHFSD                0.017   methenyltetrahydrofolate synthetase domain containi...
NR1H2                 0.017   nuclear receptor subfamily 1, group H, member 2 [Hom...
MUC12                 0.017   PREDICTED: mucin 12 
RP1L1                 0.017   retinitis pigmentosa 1-like 1 
CACNA1I               0.017   calcium channel, voltage-dependent, T type, alpha 1I...
CACNA1I               0.017   calcium channel, voltage-dependent, T type, alpha 1I...
DBX2                  0.017   developing brain homeobox 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press