Guide to the Human Genome
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Name: LOC100128095 Sequence: fasta or formatted (155aa) NCBI GI: 239755701
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {155aa} PREDICTED: hypothetical protein isoform 2
alt prot {95aa} PREDICTED: hypothetical protein isoform 1
alt mRNA {155aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         12           1
 C cysteine            1.3          2           1
 D aspartate           1.9          3           1
 E glutamate           3.2          5           1
 F phenylalanine       2.6          4           1
 G glycine             8.4         13           1
 H histidine           2.6          4           1
 I isoleucine          3.2          5           1
 K lysine              2.6          4           1
 L leucine            10.3         16           1
 M methionine          1.3          2           1
 N asparagine          1.9          3           1
 P proline            10.3         16           3
 Q glutamine           5.2          8           1
 R arginine           12.9         20           2
 S serine             11.6         18           2
 T threonine           7.1         11           3
 V valine              5.2          8           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128095          1.000   PREDICTED: hypothetical protein 
LOC100128095          1.000   PREDICTED: hypothetical protein isoform 2 
LOC100128095          0.249   PREDICTED: hypothetical protein isoform 1 
LOC100289962          0.035   PREDICTED: hypothetical protein XP_002348169 
LOC100289014          0.035   PREDICTED: hypothetical protein XP_002343836 
PLCH2                 0.028   phospholipase C, eta 2 
LOC643153             0.028   PREDICTED: hypothetical protein 
LOC100292853          0.028   PREDICTED: hypothetical protein 
LOC643153             0.028   PREDICTED: hypothetical protein 
LOC643153             0.028   PREDICTED: hypothetical protein 
LOC100288412          0.028   PREDICTED: hypothetical protein XP_002342328 
NT5C1B                0.028   5' nucleotidase, cytosolic IB isoform 1 
LOC100294010          0.025   PREDICTED: hypothetical protein 
LOC100291514          0.025   PREDICTED: hypothetical protein XP_002347163 
LOC100289311          0.025   PREDICTED: hypothetical protein XP_002343026 
LOC100132515          0.025   PREDICTED: similar to hCG2045429 
LOC100132515          0.025   PREDICTED: similar to hCG2045429 
LOC100132515          0.025   PREDICTED: similar to hCG2045429 
LOC100288108          0.025   PREDICTED: hypothetical protein 
LOC100288108          0.025   PREDICTED: hypothetical protein XP_002342919 
DMRT1                 0.025   doublesex and mab-3 related transcription factor 1 [...
SRRM1                 0.025   serine/arginine repetitive matrix 1 
LOC100290372          0.021   PREDICTED: hypothetical protein XP_002346788 
LOC100288606          0.021   PREDICTED: hypothetical protein XP_002342652 
GABRA4                0.021   gamma-aminobutyric acid A receptor, alpha 4 precurso...
NAF1                  0.021   nuclear assembly factor 1 homolog isoform a 
PHC2                  0.021   polyhomeotic-like 2 isoform a 
KLF16                 0.021   BTE-binding protein 4 
CDT1                  0.021   chromatin licensing and DNA replication factor 1 [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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