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Search of human proteins with 239744460
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744460 PREDICTED: hypothetical protein [Homo sapiens]
(506 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239744460 PREDICTED: hypothetical protein [Homo sapiens] 1064 0.0
gi|239755681 PREDICTED: hypothetical protein [Homo sapiens] 1062 0.0
gi|239750150 PREDICTED: hypothetical protein [Homo sapiens] 1062 0.0
gi|169203160 PREDICTED: hypothetical protein [Homo sapiens] 855 0.0
gi|169203656 PREDICTED: hypothetical protein [Homo sapiens] 855 0.0
gi|169202387 PREDICTED: hypothetical protein [Homo sapiens] 855 0.0
gi|39653317 jumonji domain containing 2D [Homo sapiens] 668 0.0
gi|45504380 jumonji domain containing 2B [Homo sapiens] 544 e-155
gi|226442893 jumonji domain containing 2C isoform 3 [Homo sapiens] 509 e-144
gi|226442897 jumonji domain containing 2C isoform 4 [Homo sapiens] 509 e-144
gi|226442889 jumonji domain containing 2C isoform 2 [Homo sapiens] 509 e-144
gi|109255247 jumonji domain containing 2C isoform 1 [Homo sapiens] 509 e-144
gi|98986459 jumonji domain containing 2A [Homo sapiens] 498 e-141
gi|110618244 retinoblastoma binding protein 2 isoform 1 [Homo sa... 151 1e-36
gi|110618242 retinoblastoma binding protein 2 isoform 2 [Homo sa... 151 1e-36
gi|226442991 jumonji, AT rich interactive domain 1D isoform 1 [H... 143 3e-34
gi|226442963 jumonji, AT rich interactive domain 1C isoform 2 [H... 142 7e-34
gi|109255243 jumonji, AT rich interactive domain 1C isoform 1 [H... 142 7e-34
gi|226443002 jumonji, AT rich interactive domain 1D isoform 3 [H... 141 1e-33
gi|33356560 jumonji, AT rich interactive domain 1D isoform 2 [Ho... 141 1e-33
gi|57242796 jumonji, AT rich interactive domain 1B [Homo sapiens] 133 3e-31
gi|169218173 PREDICTED: similar to Jumonji, AT rich interactive ... 133 3e-31
gi|11863152 jumonji, AT rich interactive domain 2 protein [Homo ... 80 4e-15
gi|7710145 methyl-CpG binding domain protein 2 testis-specific i... 39 0.009
gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo s... 39 0.009
gi|169160654 PREDICTED: similar to small nuclear ribonucleoprote... 37 0.042
gi|5902102 small nuclear ribonucleoprotein D1 polypeptide 16kDa ... 37 0.042
gi|110681708 zinc finger protein 579 [Homo sapiens] 37 0.055
gi|90403598 mesoderm posterior 2 homolog [Homo sapiens] 35 0.12
gi|134031945 SCO-spondin [Homo sapiens] 35 0.12
>gi|239744460 PREDICTED: hypothetical protein [Homo sapiens]
Length = 506
Score = 1064 bits (2751), Expect = 0.0
Identities = 506/506 (100%), Positives = 506/506 (100%)
Query: 1 MKSVHSSPQNTSHTIMTFYPTMEEFADFNTYVAYMESQGAHQAGLAKVIPPKEWKARQMY 60
MKSVHSSPQNTSHTIMTFYPTMEEFADFNTYVAYMESQGAHQAGLAKVIPPKEWKARQMY
Sbjct: 1 MKSVHSSPQNTSHTIMTFYPTMEEFADFNTYVAYMESQGAHQAGLAKVIPPKEWKARQMY 60
Query: 61 DDIEDILIATPLQQVTSGQGGVFTQYHKKKKAMRVGQYRRLANSKKYQTPPHQNFADLEQ 120
DDIEDILIATPLQQVTSGQGGVFTQYHKKKKAMRVGQYRRLANSKKYQTPPHQNFADLEQ
Sbjct: 61 DDIEDILIATPLQQVTSGQGGVFTQYHKKKKAMRVGQYRRLANSKKYQTPPHQNFADLEQ 120
Query: 121 RYWKSHPGNPPIYGADISGSLFEESTKQWNLGHLGTILDLLEQECGVVIEGVNTPYLYFG 180
RYWKSHPGNPPIYGADISGSLFEESTKQWNLGHLGTILDLLEQECGVVIEGVNTPYLYFG
Sbjct: 121 RYWKSHPGNPPIYGADISGSLFEESTKQWNLGHLGTILDLLEQECGVVIEGVNTPYLYFG 180
Query: 181 MWKTTFAWHTEDMDLYSINYLHFGEPKTWYVVPPEHGQHLERLARELFPDISRGCEAFLR 240
MWKTTFAWHTEDMDLYSINYLHFGEPKTWYVVPPEHGQHLERLARELFPDISRGCEAFLR
Sbjct: 181 MWKTTFAWHTEDMDLYSINYLHFGEPKTWYVVPPEHGQHLERLARELFPDISRGCEAFLR 240
Query: 241 HKVALISPTVLKENGIPFNCMTQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDY 300
HKVALISPTVLKENGIPFNCMTQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDY
Sbjct: 241 HKVALISPTVLKENGIPFNCMTQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDY 300
Query: 301 GKMASQCSCGESTVTFSMDPFVRIVQPESYELWKHRQDLAIVEHTEPRVAESQELSNWRD 360
GKMASQCSCGESTVTFSMDPFVRIVQPESYELWKHRQDLAIVEHTEPRVAESQELSNWRD
Sbjct: 301 GKMASQCSCGESTVTFSMDPFVRIVQPESYELWKHRQDLAIVEHTEPRVAESQELSNWRD 360
Query: 361 DIVLRRAALGLRLLPNLTAQCPTQPVSSGHCYNPKGCGTDAVPGSAFQSSAYHTQTQSLT 420
DIVLRRAALGLRLLPNLTAQCPTQPVSSGHCYNPKGCGTDAVPGSAFQSSAYHTQTQSLT
Sbjct: 361 DIVLRRAALGLRLLPNLTAQCPTQPVSSGHCYNPKGCGTDAVPGSAFQSSAYHTQTQSLT 420
Query: 421 LGMSARVLLPSTGSWGSGRGRGRGQGQGRGCSRGRGHGCCTRELGTEEPTVQPASKRRLL 480
LGMSARVLLPSTGSWGSGRGRGRGQGQGRGCSRGRGHGCCTRELGTEEPTVQPASKRRLL
Sbjct: 421 LGMSARVLLPSTGSWGSGRGRGRGQGQGRGCSRGRGHGCCTRELGTEEPTVQPASKRRLL 480
Query: 481 MGTRSRAQGHRPQLPLANDLMTNLSL 506
MGTRSRAQGHRPQLPLANDLMTNLSL
Sbjct: 481 MGTRSRAQGHRPQLPLANDLMTNLSL 506
>gi|239755681 PREDICTED: hypothetical protein [Homo sapiens]
Length = 506
Score = 1062 bits (2747), Expect = 0.0
Identities = 505/506 (99%), Positives = 506/506 (100%)
Query: 1 MKSVHSSPQNTSHTIMTFYPTMEEFADFNTYVAYMESQGAHQAGLAKVIPPKEWKARQMY 60
MKSVHSSPQNTSHTIMTFYPTMEEFADFNTYVAYMESQGAHQAGLAKVIPPKEWKARQMY
Sbjct: 1 MKSVHSSPQNTSHTIMTFYPTMEEFADFNTYVAYMESQGAHQAGLAKVIPPKEWKARQMY 60
Query: 61 DDIEDILIATPLQQVTSGQGGVFTQYHKKKKAMRVGQYRRLANSKKYQTPPHQNFADLEQ 120
DDIEDILIATPLQQVTSGQGGVFTQYHKKKKAMRVGQYRRLANSKKYQTPPH+NFADLEQ
Sbjct: 61 DDIEDILIATPLQQVTSGQGGVFTQYHKKKKAMRVGQYRRLANSKKYQTPPHRNFADLEQ 120
Query: 121 RYWKSHPGNPPIYGADISGSLFEESTKQWNLGHLGTILDLLEQECGVVIEGVNTPYLYFG 180
RYWKSHPGNPPIYGADISGSLFEESTKQWNLGHLGTILDLLEQECGVVIEGVNTPYLYFG
Sbjct: 121 RYWKSHPGNPPIYGADISGSLFEESTKQWNLGHLGTILDLLEQECGVVIEGVNTPYLYFG 180
Query: 181 MWKTTFAWHTEDMDLYSINYLHFGEPKTWYVVPPEHGQHLERLARELFPDISRGCEAFLR 240
MWKTTFAWHTEDMDLYSINYLHFGEPKTWYVVPPEHGQHLERLARELFPDISRGCEAFLR
Sbjct: 181 MWKTTFAWHTEDMDLYSINYLHFGEPKTWYVVPPEHGQHLERLARELFPDISRGCEAFLR 240
Query: 241 HKVALISPTVLKENGIPFNCMTQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDY 300
HKVALISPTVLKENGIPFNCMTQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDY
Sbjct: 241 HKVALISPTVLKENGIPFNCMTQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDY 300
Query: 301 GKMASQCSCGESTVTFSMDPFVRIVQPESYELWKHRQDLAIVEHTEPRVAESQELSNWRD 360
GKMASQCSCGESTVTFSMDPFVRIVQPESYELWKHRQDLAIVEHTEPRVAESQELSNWRD
Sbjct: 301 GKMASQCSCGESTVTFSMDPFVRIVQPESYELWKHRQDLAIVEHTEPRVAESQELSNWRD 360
Query: 361 DIVLRRAALGLRLLPNLTAQCPTQPVSSGHCYNPKGCGTDAVPGSAFQSSAYHTQTQSLT 420
DIVLRRAALGLRLLPNLTAQCPTQPVSSGHCYNPKGCGTDAVPGSAFQSSAYHTQTQSLT
Sbjct: 361 DIVLRRAALGLRLLPNLTAQCPTQPVSSGHCYNPKGCGTDAVPGSAFQSSAYHTQTQSLT 420
Query: 421 LGMSARVLLPSTGSWGSGRGRGRGQGQGRGCSRGRGHGCCTRELGTEEPTVQPASKRRLL 480
LGMSARVLLPSTGSWGSGRGRGRGQGQGRGCSRGRGHGCCTRELGTEEPTVQPASKRRLL
Sbjct: 421 LGMSARVLLPSTGSWGSGRGRGRGQGQGRGCSRGRGHGCCTRELGTEEPTVQPASKRRLL 480
Query: 481 MGTRSRAQGHRPQLPLANDLMTNLSL 506
MGTRSRAQGHRPQLPLANDLMTNLSL
Sbjct: 481 MGTRSRAQGHRPQLPLANDLMTNLSL 506
>gi|239750150 PREDICTED: hypothetical protein [Homo sapiens]
Length = 506
Score = 1062 bits (2747), Expect = 0.0
Identities = 505/506 (99%), Positives = 506/506 (100%)
Query: 1 MKSVHSSPQNTSHTIMTFYPTMEEFADFNTYVAYMESQGAHQAGLAKVIPPKEWKARQMY 60
MKSVHSSPQNTSHTIMTFYPTMEEFADFNTYVAYMESQGAHQAGLAKVIPPKEWKARQMY
Sbjct: 1 MKSVHSSPQNTSHTIMTFYPTMEEFADFNTYVAYMESQGAHQAGLAKVIPPKEWKARQMY 60
Query: 61 DDIEDILIATPLQQVTSGQGGVFTQYHKKKKAMRVGQYRRLANSKKYQTPPHQNFADLEQ 120
DDIEDILIATPLQQVTSGQGGVFTQYHKKKKAMRVGQYRRLANSKKYQTPPH+NFADLEQ
Sbjct: 61 DDIEDILIATPLQQVTSGQGGVFTQYHKKKKAMRVGQYRRLANSKKYQTPPHRNFADLEQ 120
Query: 121 RYWKSHPGNPPIYGADISGSLFEESTKQWNLGHLGTILDLLEQECGVVIEGVNTPYLYFG 180
RYWKSHPGNPPIYGADISGSLFEESTKQWNLGHLGTILDLLEQECGVVIEGVNTPYLYFG
Sbjct: 121 RYWKSHPGNPPIYGADISGSLFEESTKQWNLGHLGTILDLLEQECGVVIEGVNTPYLYFG 180
Query: 181 MWKTTFAWHTEDMDLYSINYLHFGEPKTWYVVPPEHGQHLERLARELFPDISRGCEAFLR 240
MWKTTFAWHTEDMDLYSINYLHFGEPKTWYVVPPEHGQHLERLARELFPDISRGCEAFLR
Sbjct: 181 MWKTTFAWHTEDMDLYSINYLHFGEPKTWYVVPPEHGQHLERLARELFPDISRGCEAFLR 240
Query: 241 HKVALISPTVLKENGIPFNCMTQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDY 300
HKVALISPTVLKENGIPFNCMTQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDY
Sbjct: 241 HKVALISPTVLKENGIPFNCMTQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDY 300
Query: 301 GKMASQCSCGESTVTFSMDPFVRIVQPESYELWKHRQDLAIVEHTEPRVAESQELSNWRD 360
GKMASQCSCGESTVTFSMDPFVRIVQPESYELWKHRQDLAIVEHTEPRVAESQELSNWRD
Sbjct: 301 GKMASQCSCGESTVTFSMDPFVRIVQPESYELWKHRQDLAIVEHTEPRVAESQELSNWRD 360
Query: 361 DIVLRRAALGLRLLPNLTAQCPTQPVSSGHCYNPKGCGTDAVPGSAFQSSAYHTQTQSLT 420
DIVLRRAALGLRLLPNLTAQCPTQPVSSGHCYNPKGCGTDAVPGSAFQSSAYHTQTQSLT
Sbjct: 361 DIVLRRAALGLRLLPNLTAQCPTQPVSSGHCYNPKGCGTDAVPGSAFQSSAYHTQTQSLT 420
Query: 421 LGMSARVLLPSTGSWGSGRGRGRGQGQGRGCSRGRGHGCCTRELGTEEPTVQPASKRRLL 480
LGMSARVLLPSTGSWGSGRGRGRGQGQGRGCSRGRGHGCCTRELGTEEPTVQPASKRRLL
Sbjct: 421 LGMSARVLLPSTGSWGSGRGRGRGQGQGRGCSRGRGHGCCTRELGTEEPTVQPASKRRLL 480
Query: 481 MGTRSRAQGHRPQLPLANDLMTNLSL 506
MGTRSRAQGHRPQLPLANDLMTNLSL
Sbjct: 481 MGTRSRAQGHRPQLPLANDLMTNLSL 506
>gi|169203160 PREDICTED: hypothetical protein [Homo sapiens]
Length = 638
Score = 855 bits (2208), Expect = 0.0
Identities = 420/503 (83%), Positives = 440/503 (87%), Gaps = 17/503 (3%)
Query: 1 MKSVHSSPQNTSHTIMTFYPTMEEFADFNTYVAYMESQGAHQAGLAKVIPPKEWKARQMY 60
MKSVHSSPQNTSHTIMTFYPTMEEFADFNTYVAYMESQGAH+AGLAKVIPPKEWKARQMY
Sbjct: 1 MKSVHSSPQNTSHTIMTFYPTMEEFADFNTYVAYMESQGAHRAGLAKVIPPKEWKARQMY 60
Query: 61 DDIEDILIATPLQQVTSGQGGVFTQYHKKKKAMRVGQYRRLANSKKYQTPPHQNFADLEQ 120
DDIEDILIATPLQQVTSGQGGVFTQYHKKKKAMRVGQYR LANSKKYQTPPHQNFADLEQ
Sbjct: 61 DDIEDILIATPLQQVTSGQGGVFTQYHKKKKAMRVGQYRHLANSKKYQTPPHQNFADLEQ 120
Query: 121 RYWKSHPGNPPIYGADISGSLFEESTKQWNLGHLGTILDLLEQECGVVIEGVNTPYLYFG 180
RYWKSHPGNPPIYGADISGSLFEESTKQWNLGHLGTILDLLEQECGVVIEGVNTPYLYFG
Sbjct: 121 RYWKSHPGNPPIYGADISGSLFEESTKQWNLGHLGTILDLLEQECGVVIEGVNTPYLYFG 180
Query: 181 MWKTTFAWHTEDMDLYSINYLHFGEPKTWYVVPPEHGQHLERLARELFPDISRGCEAFLR 240
MWKTTFAWHTEDMDLYSINYLHFGEPKTWYVVPPEHGQ LE LARELFP SRGCE FLR
Sbjct: 181 MWKTTFAWHTEDMDLYSINYLHFGEPKTWYVVPPEHGQRLECLARELFPGNSRGCEGFLR 240
Query: 241 HKVALISPTVLKENGIPFNCMTQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDY 300
HKVALISPTVLK+NGIPFN MTQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDY
Sbjct: 241 HKVALISPTVLKKNGIPFNRMTQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDY 300
Query: 301 GKMASQCSCGESTVTFSMDPFVRIVQPESYELWKHRQDLAIVEHTEPRVAESQELSNWRD 360
GK+ASQCSCGE+ VTFSMD FVRI+QPESYELWKHRQDL +V++ EPRVAESQE SNWR+
Sbjct: 301 GKVASQCSCGEARVTFSMDAFVRILQPESYELWKHRQDLTVVDYMEPRVAESQEPSNWRE 360
Query: 361 DIVLRRAALGLRLLPNLTAQCPTQPVSSGHCYNPKGCGTDAVPGSAFQSSAYHTQTQSLT 420
DI LRRAALGLR L N CPT+ V+ CYNPKG GTDAVPGSA Q+
Sbjct: 361 DIALRRAALGLRHLRNHITSCPTRTVAPRLCYNPKGGGTDAVPGSAIQA----------- 409
Query: 421 LGMSARVLLPSTGSWGSGRGRGRGQGQGRGCSRGRGHGCCTRELGTEEPTVQPASKRRLL 480
L SA VL PSTG WG RG GRG+G RGRG G RELGTEE TVQ A+KRRL
Sbjct: 410 LETSAWVLPPSTGRWGPCRGCGRGRG------RGRGRGRRPRELGTEETTVQSAAKRRLS 463
Query: 481 MGTRSRAQGHRPQLPLANDLMTN 503
+GT SRA G +PQL A++ +T+
Sbjct: 464 VGTGSRAPGRKPQLQFADEALTD 486
>gi|169203656 PREDICTED: hypothetical protein [Homo sapiens]
Length = 638
Score = 855 bits (2208), Expect = 0.0
Identities = 420/503 (83%), Positives = 440/503 (87%), Gaps = 17/503 (3%)
Query: 1 MKSVHSSPQNTSHTIMTFYPTMEEFADFNTYVAYMESQGAHQAGLAKVIPPKEWKARQMY 60
MKSVHSSPQNTSHTIMTFYPTMEEFADFNTYVAYMESQGAH+AGLAKVIPPKEWKARQMY
Sbjct: 1 MKSVHSSPQNTSHTIMTFYPTMEEFADFNTYVAYMESQGAHRAGLAKVIPPKEWKARQMY 60
Query: 61 DDIEDILIATPLQQVTSGQGGVFTQYHKKKKAMRVGQYRRLANSKKYQTPPHQNFADLEQ 120
DDIEDILIATPLQQVTSGQGGVFTQYHKKKKAMRVGQYR LANSKKYQTPPHQNFADLEQ
Sbjct: 61 DDIEDILIATPLQQVTSGQGGVFTQYHKKKKAMRVGQYRHLANSKKYQTPPHQNFADLEQ 120
Query: 121 RYWKSHPGNPPIYGADISGSLFEESTKQWNLGHLGTILDLLEQECGVVIEGVNTPYLYFG 180
RYWKSHPGNPPIYGADISGSLFEESTKQWNLGHLGTILDLLEQECGVVIEGVNTPYLYFG
Sbjct: 121 RYWKSHPGNPPIYGADISGSLFEESTKQWNLGHLGTILDLLEQECGVVIEGVNTPYLYFG 180
Query: 181 MWKTTFAWHTEDMDLYSINYLHFGEPKTWYVVPPEHGQHLERLARELFPDISRGCEAFLR 240
MWKTTFAWHTEDMDLYSINYLHFGEPKTWYVVPPEHGQ LE LARELFP SRGCE FLR
Sbjct: 181 MWKTTFAWHTEDMDLYSINYLHFGEPKTWYVVPPEHGQRLECLARELFPGNSRGCEGFLR 240
Query: 241 HKVALISPTVLKENGIPFNCMTQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDY 300
HKVALISPTVLK+NGIPFN MTQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDY
Sbjct: 241 HKVALISPTVLKKNGIPFNRMTQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDY 300
Query: 301 GKMASQCSCGESTVTFSMDPFVRIVQPESYELWKHRQDLAIVEHTEPRVAESQELSNWRD 360
GK+ASQCSCGE+ VTFSMD FVRI+QPESYELWKHRQDL +V++ EPRVAESQE SNWR+
Sbjct: 301 GKVASQCSCGEARVTFSMDAFVRILQPESYELWKHRQDLTVVDYMEPRVAESQEPSNWRE 360
Query: 361 DIVLRRAALGLRLLPNLTAQCPTQPVSSGHCYNPKGCGTDAVPGSAFQSSAYHTQTQSLT 420
DI LRRAALGLR L N CPT+ V+ CYNPKG GTDAVPGSA Q+
Sbjct: 361 DIALRRAALGLRHLRNHITSCPTRTVAPRLCYNPKGGGTDAVPGSAIQA----------- 409
Query: 421 LGMSARVLLPSTGSWGSGRGRGRGQGQGRGCSRGRGHGCCTRELGTEEPTVQPASKRRLL 480
L SA VL PSTG WG RG GRG+G RGRG G RELGTEE TVQ A+KRRL
Sbjct: 410 LETSAWVLPPSTGRWGPCRGCGRGRG------RGRGRGRRPRELGTEETTVQSAAKRRLS 463
Query: 481 MGTRSRAQGHRPQLPLANDLMTN 503
+GT SRA G +PQL A++ +T+
Sbjct: 464 VGTGSRAPGRKPQLQFADEALTD 486
>gi|169202387 PREDICTED: hypothetical protein [Homo sapiens]
Length = 638
Score = 855 bits (2208), Expect = 0.0
Identities = 420/503 (83%), Positives = 440/503 (87%), Gaps = 17/503 (3%)
Query: 1 MKSVHSSPQNTSHTIMTFYPTMEEFADFNTYVAYMESQGAHQAGLAKVIPPKEWKARQMY 60
MKSVHSSPQNTSHTIMTFYPTMEEFADFNTYVAYMESQGAH+AGLAKVIPPKEWKARQMY
Sbjct: 1 MKSVHSSPQNTSHTIMTFYPTMEEFADFNTYVAYMESQGAHRAGLAKVIPPKEWKARQMY 60
Query: 61 DDIEDILIATPLQQVTSGQGGVFTQYHKKKKAMRVGQYRRLANSKKYQTPPHQNFADLEQ 120
DDIEDILIATPLQQVTSGQGGVFTQYHKKKKAMRVGQYR LANSKKYQTPPHQNFADLEQ
Sbjct: 61 DDIEDILIATPLQQVTSGQGGVFTQYHKKKKAMRVGQYRHLANSKKYQTPPHQNFADLEQ 120
Query: 121 RYWKSHPGNPPIYGADISGSLFEESTKQWNLGHLGTILDLLEQECGVVIEGVNTPYLYFG 180
RYWKSHPGNPPIYGADISGSLFEESTKQWNLGHLGTILDLLEQECGVVIEGVNTPYLYFG
Sbjct: 121 RYWKSHPGNPPIYGADISGSLFEESTKQWNLGHLGTILDLLEQECGVVIEGVNTPYLYFG 180
Query: 181 MWKTTFAWHTEDMDLYSINYLHFGEPKTWYVVPPEHGQHLERLARELFPDISRGCEAFLR 240
MWKTTFAWHTEDMDLYSINYLHFGEPKTWYVVPPEHGQ LE LARELFP SRGCE FLR
Sbjct: 181 MWKTTFAWHTEDMDLYSINYLHFGEPKTWYVVPPEHGQRLECLARELFPGNSRGCEGFLR 240
Query: 241 HKVALISPTVLKENGIPFNCMTQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDY 300
HKVALISPTVLK+NGIPFN MTQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDY
Sbjct: 241 HKVALISPTVLKKNGIPFNRMTQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDY 300
Query: 301 GKMASQCSCGESTVTFSMDPFVRIVQPESYELWKHRQDLAIVEHTEPRVAESQELSNWRD 360
GK+ASQCSCGE+ VTFSMD FVRI+QPESYELWKHRQDL +V++ EPRVAESQE SNWR+
Sbjct: 301 GKVASQCSCGEARVTFSMDAFVRILQPESYELWKHRQDLTVVDYMEPRVAESQEPSNWRE 360
Query: 361 DIVLRRAALGLRLLPNLTAQCPTQPVSSGHCYNPKGCGTDAVPGSAFQSSAYHTQTQSLT 420
DI LRRAALGLR L N CPT+ V+ CYNPKG GTDAVPGSA Q+
Sbjct: 361 DIALRRAALGLRHLRNHITSCPTRTVAPRLCYNPKGGGTDAVPGSAIQA----------- 409
Query: 421 LGMSARVLLPSTGSWGSGRGRGRGQGQGRGCSRGRGHGCCTRELGTEEPTVQPASKRRLL 480
L SA VL PSTG WG RG GRG+G RGRG G RELGTEE TVQ A+KRRL
Sbjct: 410 LETSAWVLPPSTGRWGPCRGCGRGRG------RGRGRGRRPRELGTEETTVQSAAKRRLS 463
Query: 481 MGTRSRAQGHRPQLPLANDLMTN 503
+GT SRA G +PQL A++ +T+
Sbjct: 464 VGTGSRAPGRKPQLQFADEALTD 486
>gi|39653317 jumonji domain containing 2D [Homo sapiens]
Length = 523
Score = 668 bits (1724), Expect = 0.0
Identities = 346/512 (67%), Positives = 390/512 (76%), Gaps = 34/512 (6%)
Query: 1 MKSVHSSPQNTSHTIMTFYPTMEEFADFNTYVAYMESQGAHQAGLAKVIPPKEWKARQMY 60
MKS + QN + IM F+PT EEF DF+ Y+AYMESQGAH+AGLAK+IPPKEWKAR+ Y
Sbjct: 4 MKSKANCAQNPNCNIMIFHPTKEEFNDFDKYIAYMESQGAHRAGLAKIIPPKEWKARETY 63
Query: 61 DDIEDILIATPLQQVTSGQGGVFTQYHKKKKAMRVGQYRRLANSKKYQTPPHQNFADLEQ 120
D+I +ILIATPLQQV SG+ GVFTQYHKKKKAM VG+YR LANSKKYQTPPHQNF DLE+
Sbjct: 64 DNISEILIATPLQQVASGRAGVFTQYHKKKKAMTVGEYRHLANSKKYQTPPHQNFEDLER 123
Query: 121 RYWKSHPGNPPIYGADISGSLFEESTKQWNLGHLGTILDLLEQECGVVIEGVNTPYLYFG 180
+YWK+ N PIYGADISGSLF+E+TKQWNLGHLGTI DLLE+ECGVVIEGVNTPYLYFG
Sbjct: 124 KYWKNRIYNSPIYGADISGSLFDENTKQWNLGHLGTIQDLLEKECGVVIEGVNTPYLYFG 183
Query: 181 MWKTTFAWHTEDMDLYSINYLHFGEPKTWYVVPPEHGQHLERLARELFPDISRGCEAFLR 240
MWKTTFAWHTEDMDLYSINYLH GEPKTWYVVPPEHGQ LERLARELFP SRGC AFLR
Sbjct: 184 MWKTTFAWHTEDMDLYSINYLHLGEPKTWYVVPPEHGQRLERLARELFPGSSRGCGAFLR 243
Query: 241 HKVALISPTVLKENGIPFNCMTQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDY 300
HKVALISPTVLKENGIPFN +TQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDY
Sbjct: 244 HKVALISPTVLKENGIPFNRITQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDY 303
Query: 301 GKMASQCSCGESTVTFSMDPFVRIVQPESYELWKHRQDLAIVEHTEPRVAESQELSNWRD 360
GKMASQCSCGE+ VTFSMD FVRI+QPE Y+LWK QD A+V+H EPRV SQELS ++
Sbjct: 304 GKMASQCSCGEARVTFSMDAFVRILQPERYDLWKRGQDRAVVDHMEPRVPASQELSTQKE 363
Query: 361 DIVLRRAALGLRLLPNLTAQCPTQPVS--SGHCYNPKGCGT----DAVPGSAFQ------ 408
+ RRAALGLR LP+ A+ P++ SG + C + AV G+A Q
Sbjct: 364 VQLPRRAALGLRQLPSHWARHSPWPMAARSGTRCHTLVCSSLPRRSAVSGTATQPRAAAV 423
Query: 409 -SSAYHTQTQSLTLGMSARVLLPSTGSWGSGRGRGRGQGQGRGCSRGRGHGCCTRELGTE 467
SS + T S T G SA+++ PS G RGRGR ++L +
Sbjct: 424 HSSKKPSSTPSSTPGPSAQIIHPSNGR----RGRGRP----------------PQKLRAQ 463
Query: 468 EPTVQPASKRRLLMGTRSRAQGHRPQLPLAND 499
E T+Q +KR LL GT A G P+ PL D
Sbjct: 464 ELTLQTPAKRPLLAGTTCTASGPEPE-PLPED 494
>gi|45504380 jumonji domain containing 2B [Homo sapiens]
Length = 1096
Score = 544 bits (1402), Expect = e-155
Identities = 253/374 (67%), Positives = 302/374 (80%), Gaps = 4/374 (1%)
Query: 1 MKSVHSSPQNTSHTIMTFYPTMEEFADFNTYVAYMESQGAHQAGLAKVIPPKEWKARQMY 60
M S QN S IMTF PTMEEF DFN YVAY+ESQGAH+AGLAK+IPPKEWK RQ Y
Sbjct: 1 MGSEDHGAQNPSCKIMTFRPTMEEFKDFNKYVAYIESQGAHRAGLAKIIPPKEWKPRQTY 60
Query: 61 DDIEDILIATPLQQVTSGQGGVFTQYHKKKKAMRVGQYRRLANSKKYQTPPHQNFADLEQ 120
DDI+D++I P+QQV +GQ G+FTQY+ +KKAM VG+YRRLANS+KY TP HQ+F DLE+
Sbjct: 61 DDIDDVVIPAPIQQVVTGQSGLFTQYNIQKKAMTVGEYRRLANSEKYCTPRHQDFDDLER 120
Query: 121 RYWKSHPGNPPIYGADISGSLFEESTKQWNLGHLGTILDLLEQECGVVIEGVNTPYLYFG 180
+YWK+ PIYGADISGSL+++ QWN+G L TILD++E+ECG +IEGVNTPYLYFG
Sbjct: 121 KYWKNLTFVSPIYGADISGSLYDDDVAQWNIGSLRTILDMVERECGTIIEGVNTPYLYFG 180
Query: 181 MWKTTFAWHTEDMDLYSINYLHFGEPKTWYVVPPEHGQHLERLARELFPDISRGCEAFLR 240
MWKTTFAWHTEDMDLYSINYLHFGEPK+WY +PPEHG+ LERLA FP S+GC+AFLR
Sbjct: 181 MWKTTFAWHTEDMDLYSINYLHFGEPKSWYAIPPEHGKRLERLAIGFFPGSSQGCDAFLR 240
Query: 241 HKVALISPTVLKENGIPFNCMTQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDY 300
HK+ LISP +LK+ GIPF+ +TQEAGEFM+TFPYGYHAGFNHGFNCAE+ NFAT RWIDY
Sbjct: 241 HKMTLISPIILKKYGIPFSRITQEAGEFMITFPYGYHAGFNHGFNCAESTNFATLRWIDY 300
Query: 301 GKMASQCSCGESTVTFSMDPFVRIVQPESYELWKHRQDLAIVEHTEPRVAESQELSNWRD 360
GK+A+QC+C + V SMD FVRI+QPE YELWK +DL +++HT P S ELS+W
Sbjct: 301 GKVATQCTCRKDMVKISMDVFVRILQPERYELWKQGKDLTVLDHTRPTALTSPELSSWS- 359
Query: 361 DIVLRRAALGLRLL 374
RA+L +LL
Sbjct: 360 ---ASRASLKAKLL 370
>gi|226442893 jumonji domain containing 2C isoform 3 [Homo sapiens]
Length = 813
Score = 509 bits (1311), Expect = e-144
Identities = 228/352 (64%), Positives = 287/352 (81%)
Query: 7 SPQNTSHTIMTFYPTMEEFADFNTYVAYMESQGAHQAGLAKVIPPKEWKARQMYDDIEDI 66
SP N S IMTF P+MEEF +FN Y+AYMES+GAH+AGLAKVIPPKEWK RQ YDDI+++
Sbjct: 8 SPLNPSCKIMTFRPSMEEFREFNKYLAYMESKGAHRAGLAKVIPPKEWKPRQCYDDIDNL 67
Query: 67 LIATPLQQVTSGQGGVFTQYHKKKKAMRVGQYRRLANSKKYQTPPHQNFADLEQRYWKSH 126
LI P+QQ+ +GQ G+FTQY+ +KKAM V ++R+LANS KY TP + ++ DLE++YWK+
Sbjct: 68 LIPAPIQQMVTGQSGLFTQYNIQKKAMTVKEFRQLANSGKYCTPRYLDYEDLERKYWKNL 127
Query: 127 PGNPPIYGADISGSLFEESTKQWNLGHLGTILDLLEQECGVVIEGVNTPYLYFGMWKTTF 186
PIYGADI+GS+++E +WN+ L T+LD++E+ECG+ IEGVNTPYLYFGMWKTTF
Sbjct: 128 TFVAPIYGADINGSIYDEGVDEWNIARLNTVLDVVEEECGISIEGVNTPYLYFGMWKTTF 187
Query: 187 AWHTEDMDLYSINYLHFGEPKTWYVVPPEHGQHLERLARELFPDISRGCEAFLRHKVALI 246
AWHTEDMDLYSINYLHFGEPK+WY +PPEHG+ LERLA+ FP S+GC+AFLRHK+ LI
Sbjct: 188 AWHTEDMDLYSINYLHFGEPKSWYAIPPEHGKRLERLAQGFFPSSSQGCDAFLRHKMTLI 247
Query: 247 SPTVLKENGIPFNCMTQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDYGKMASQ 306
SP+VLK+ GIPF+ +TQEAGEFM+TFPYGYHAGFNHGFNCAE+ NFAT RWIDYGK+A
Sbjct: 248 SPSVLKKYGIPFDKITQEAGEFMITFPYGYHAGFNHGFNCAESTNFATVRWIDYGKVAKL 307
Query: 307 CSCGESTVTFSMDPFVRIVQPESYELWKHRQDLAIVEHTEPRVAESQELSNW 358
C+C + V SMD FVR QP+ Y+LWK +D+ ++HT+P A + E+ W
Sbjct: 308 CTCRKDMVKISMDIFVRKFQPDRYQLWKQGKDIYTIDHTKPTPASTPEVKAW 359
>gi|226442897 jumonji domain containing 2C isoform 4 [Homo sapiens]
Length = 835
Score = 509 bits (1311), Expect = e-144
Identities = 228/352 (64%), Positives = 287/352 (81%)
Query: 7 SPQNTSHTIMTFYPTMEEFADFNTYVAYMESQGAHQAGLAKVIPPKEWKARQMYDDIEDI 66
SP N S IMTF P+MEEF +FN Y+AYMES+GAH+AGLAKVIPPKEWK RQ YDDI+++
Sbjct: 30 SPLNPSCKIMTFRPSMEEFREFNKYLAYMESKGAHRAGLAKVIPPKEWKPRQCYDDIDNL 89
Query: 67 LIATPLQQVTSGQGGVFTQYHKKKKAMRVGQYRRLANSKKYQTPPHQNFADLEQRYWKSH 126
LI P+QQ+ +GQ G+FTQY+ +KKAM V ++R+LANS KY TP + ++ DLE++YWK+
Sbjct: 90 LIPAPIQQMVTGQSGLFTQYNIQKKAMTVKEFRQLANSGKYCTPRYLDYEDLERKYWKNL 149
Query: 127 PGNPPIYGADISGSLFEESTKQWNLGHLGTILDLLEQECGVVIEGVNTPYLYFGMWKTTF 186
PIYGADI+GS+++E +WN+ L T+LD++E+ECG+ IEGVNTPYLYFGMWKTTF
Sbjct: 150 TFVAPIYGADINGSIYDEGVDEWNIARLNTVLDVVEEECGISIEGVNTPYLYFGMWKTTF 209
Query: 187 AWHTEDMDLYSINYLHFGEPKTWYVVPPEHGQHLERLARELFPDISRGCEAFLRHKVALI 246
AWHTEDMDLYSINYLHFGEPK+WY +PPEHG+ LERLA+ FP S+GC+AFLRHK+ LI
Sbjct: 210 AWHTEDMDLYSINYLHFGEPKSWYAIPPEHGKRLERLAQGFFPSSSQGCDAFLRHKMTLI 269
Query: 247 SPTVLKENGIPFNCMTQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDYGKMASQ 306
SP+VLK+ GIPF+ +TQEAGEFM+TFPYGYHAGFNHGFNCAE+ NFAT RWIDYGK+A
Sbjct: 270 SPSVLKKYGIPFDKITQEAGEFMITFPYGYHAGFNHGFNCAESTNFATVRWIDYGKVAKL 329
Query: 307 CSCGESTVTFSMDPFVRIVQPESYELWKHRQDLAIVEHTEPRVAESQELSNW 358
C+C + V SMD FVR QP+ Y+LWK +D+ ++HT+P A + E+ W
Sbjct: 330 CTCRKDMVKISMDIFVRKFQPDRYQLWKQGKDIYTIDHTKPTPASTPEVKAW 381
>gi|226442889 jumonji domain containing 2C isoform 2 [Homo sapiens]
Length = 1047
Score = 509 bits (1311), Expect = e-144
Identities = 228/352 (64%), Positives = 287/352 (81%)
Query: 7 SPQNTSHTIMTFYPTMEEFADFNTYVAYMESQGAHQAGLAKVIPPKEWKARQMYDDIEDI 66
SP N S IMTF P+MEEF +FN Y+AYMES+GAH+AGLAKVIPPKEWK RQ YDDI+++
Sbjct: 8 SPLNPSCKIMTFRPSMEEFREFNKYLAYMESKGAHRAGLAKVIPPKEWKPRQCYDDIDNL 67
Query: 67 LIATPLQQVTSGQGGVFTQYHKKKKAMRVGQYRRLANSKKYQTPPHQNFADLEQRYWKSH 126
LI P+QQ+ +GQ G+FTQY+ +KKAM V ++R+LANS KY TP + ++ DLE++YWK+
Sbjct: 68 LIPAPIQQMVTGQSGLFTQYNIQKKAMTVKEFRQLANSGKYCTPRYLDYEDLERKYWKNL 127
Query: 127 PGNPPIYGADISGSLFEESTKQWNLGHLGTILDLLEQECGVVIEGVNTPYLYFGMWKTTF 186
PIYGADI+GS+++E +WN+ L T+LD++E+ECG+ IEGVNTPYLYFGMWKTTF
Sbjct: 128 TFVAPIYGADINGSIYDEGVDEWNIARLNTVLDVVEEECGISIEGVNTPYLYFGMWKTTF 187
Query: 187 AWHTEDMDLYSINYLHFGEPKTWYVVPPEHGQHLERLARELFPDISRGCEAFLRHKVALI 246
AWHTEDMDLYSINYLHFGEPK+WY +PPEHG+ LERLA+ FP S+GC+AFLRHK+ LI
Sbjct: 188 AWHTEDMDLYSINYLHFGEPKSWYAIPPEHGKRLERLAQGFFPSSSQGCDAFLRHKMTLI 247
Query: 247 SPTVLKENGIPFNCMTQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDYGKMASQ 306
SP+VLK+ GIPF+ +TQEAGEFM+TFPYGYHAGFNHGFNCAE+ NFAT RWIDYGK+A
Sbjct: 248 SPSVLKKYGIPFDKITQEAGEFMITFPYGYHAGFNHGFNCAESTNFATVRWIDYGKVAKL 307
Query: 307 CSCGESTVTFSMDPFVRIVQPESYELWKHRQDLAIVEHTEPRVAESQELSNW 358
C+C + V SMD FVR QP+ Y+LWK +D+ ++HT+P A + E+ W
Sbjct: 308 CTCRKDMVKISMDIFVRKFQPDRYQLWKQGKDIYTIDHTKPTPASTPEVKAW 359
>gi|109255247 jumonji domain containing 2C isoform 1 [Homo sapiens]
Length = 1056
Score = 509 bits (1311), Expect = e-144
Identities = 228/352 (64%), Positives = 287/352 (81%)
Query: 7 SPQNTSHTIMTFYPTMEEFADFNTYVAYMESQGAHQAGLAKVIPPKEWKARQMYDDIEDI 66
SP N S IMTF P+MEEF +FN Y+AYMES+GAH+AGLAKVIPPKEWK RQ YDDI+++
Sbjct: 8 SPLNPSCKIMTFRPSMEEFREFNKYLAYMESKGAHRAGLAKVIPPKEWKPRQCYDDIDNL 67
Query: 67 LIATPLQQVTSGQGGVFTQYHKKKKAMRVGQYRRLANSKKYQTPPHQNFADLEQRYWKSH 126
LI P+QQ+ +GQ G+FTQY+ +KKAM V ++R+LANS KY TP + ++ DLE++YWK+
Sbjct: 68 LIPAPIQQMVTGQSGLFTQYNIQKKAMTVKEFRQLANSGKYCTPRYLDYEDLERKYWKNL 127
Query: 127 PGNPPIYGADISGSLFEESTKQWNLGHLGTILDLLEQECGVVIEGVNTPYLYFGMWKTTF 186
PIYGADI+GS+++E +WN+ L T+LD++E+ECG+ IEGVNTPYLYFGMWKTTF
Sbjct: 128 TFVAPIYGADINGSIYDEGVDEWNIARLNTVLDVVEEECGISIEGVNTPYLYFGMWKTTF 187
Query: 187 AWHTEDMDLYSINYLHFGEPKTWYVVPPEHGQHLERLARELFPDISRGCEAFLRHKVALI 246
AWHTEDMDLYSINYLHFGEPK+WY +PPEHG+ LERLA+ FP S+GC+AFLRHK+ LI
Sbjct: 188 AWHTEDMDLYSINYLHFGEPKSWYAIPPEHGKRLERLAQGFFPSSSQGCDAFLRHKMTLI 247
Query: 247 SPTVLKENGIPFNCMTQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDYGKMASQ 306
SP+VLK+ GIPF+ +TQEAGEFM+TFPYGYHAGFNHGFNCAE+ NFAT RWIDYGK+A
Sbjct: 248 SPSVLKKYGIPFDKITQEAGEFMITFPYGYHAGFNHGFNCAESTNFATVRWIDYGKVAKL 307
Query: 307 CSCGESTVTFSMDPFVRIVQPESYELWKHRQDLAIVEHTEPRVAESQELSNW 358
C+C + V SMD FVR QP+ Y+LWK +D+ ++HT+P A + E+ W
Sbjct: 308 CTCRKDMVKISMDIFVRKFQPDRYQLWKQGKDIYTIDHTKPTPASTPEVKAW 359
>gi|98986459 jumonji domain containing 2A [Homo sapiens]
Length = 1064
Score = 498 bits (1282), Expect = e-141
Identities = 224/342 (65%), Positives = 278/342 (81%)
Query: 6 SSPQNTSHTIMTFYPTMEEFADFNTYVAYMESQGAHQAGLAKVIPPKEWKARQMYDDIED 65
S N S IMTFYPTMEEF +F+ Y+AY+ESQGAH+AGLAKV+PPKEWK R YDDI+D
Sbjct: 5 SETLNPSARIMTFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKPRASYDDIDD 64
Query: 66 ILIATPLQQVTSGQGGVFTQYHKKKKAMRVGQYRRLANSKKYQTPPHQNFADLEQRYWKS 125
++I P+QQ+ +GQ G+FTQY+ +KKAM V ++R++ANS KY TP + F +LE++YWK+
Sbjct: 65 LVIPAPIQQLVTGQSGLFTQYNIQKKAMTVREFRKIANSDKYCTPRYSEFEELERKYWKN 124
Query: 126 HPGNPPIYGADISGSLFEESTKQWNLGHLGTILDLLEQECGVVIEGVNTPYLYFGMWKTT 185
NPPIYGAD++G+L+E+ +WN+G L TILDL+E+E G+ IEGVNTPYLYFGMWKT+
Sbjct: 125 LTFNPPIYGADVNGTLYEKHVDEWNIGRLRTILDLVEKESGITIEGVNTPYLYFGMWKTS 184
Query: 186 FAWHTEDMDLYSINYLHFGEPKTWYVVPPEHGQHLERLARELFPDISRGCEAFLRHKVAL 245
FAWHTEDMDLYSINYLHFGEPK+WY VPPEHG+ LERLA+ FP ++ CEAFLRHK+ L
Sbjct: 185 FAWHTEDMDLYSINYLHFGEPKSWYSVPPEHGKRLERLAKGFFPGSAQSCEAFLRHKMTL 244
Query: 246 ISPTVLKENGIPFNCMTQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDYGKMAS 305
ISP +LK+ GIPF+ +TQEAGEFM+TFPYGYHAGFNHGFNCAE+ NFAT RWI+YGK A
Sbjct: 245 ISPLMLKKYGIPFDKVTQEAGEFMITFPYGYHAGFNHGFNCAESTNFATRRWIEYGKQAV 304
Query: 306 QCSCGESTVTFSMDPFVRIVQPESYELWKHRQDLAIVEHTEP 347
CSC + V SMD FVR QPE Y+LWK +D +++HT P
Sbjct: 305 LCSCRKDMVKISMDVFVRKFQPERYKLWKAGKDNTVIDHTLP 346
>gi|110618244 retinoblastoma binding protein 2 isoform 1 [Homo
sapiens]
Length = 1690
Score = 151 bits (382), Expect = 1e-36
Identities = 78/188 (41%), Positives = 103/188 (54%), Gaps = 18/188 (9%)
Query: 133 YGADISGSLF------------------EESTKQWNLGHLGTILDLLEQECGVVIEGVNT 174
YGADIS F E + WNL ++ + + V I G+
Sbjct: 409 YGADISSKDFGSGFPVKDGRRKILPEEEEYALSGWNLNNMPVLEQSVLAHINVDISGMKV 468
Query: 175 PYLYFGMWKTTFAWHTEDMDLYSINYLHFGEPKTWYVVPPEHGQHLERLARELFPDISRG 234
P+LY GM ++F WH ED YSINYLH+GEPKTWY VP + LE + REL P++
Sbjct: 469 PWLYVGMCFSSFCWHIEDHWSYSINYLHWGEPKTWYGVPSHAAEQLEEVMRELAPELFES 528
Query: 235 CEAFLRHKVALISPTVLKENGIPFNCMTQEAGEFMVTFPYGYHAGFNHGFNCAEAINFAT 294
L V +++P VL E+G+P Q AGEF+VTFP YH+GFN G+N AEA+NF T
Sbjct: 529 QPDLLHQLVTIMNPNVLMEHGVPVYRTNQCAGEFVVTFPRAYHSGFNQGYNFAEAVNFCT 588
Query: 295 PRWIDYGK 302
W+ G+
Sbjct: 589 ADWLPIGR 596
Score = 30.8 bits (68), Expect = 3.0
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 18 FYPTMEEFADFNTYVAYMESQGAHQAGLAKVIPPKEWK 55
F P+ EEF D +++ + A + G+ K+ PPK+W+
Sbjct: 22 FEPSWEEFTDPLSFIGRIRPL-AEKTGICKIRPPKDWQ 58
>gi|110618242 retinoblastoma binding protein 2 isoform 2 [Homo
sapiens]
Length = 1641
Score = 151 bits (382), Expect = 1e-36
Identities = 78/188 (41%), Positives = 103/188 (54%), Gaps = 18/188 (9%)
Query: 133 YGADISGSLF------------------EESTKQWNLGHLGTILDLLEQECGVVIEGVNT 174
YGADIS F E + WNL ++ + + V I G+
Sbjct: 409 YGADISSKDFGSGFPVKDGRRKILPEEEEYALSGWNLNNMPVLEQSVLAHINVDISGMKV 468
Query: 175 PYLYFGMWKTTFAWHTEDMDLYSINYLHFGEPKTWYVVPPEHGQHLERLARELFPDISRG 234
P+LY GM ++F WH ED YSINYLH+GEPKTWY VP + LE + REL P++
Sbjct: 469 PWLYVGMCFSSFCWHIEDHWSYSINYLHWGEPKTWYGVPSHAAEQLEEVMRELAPELFES 528
Query: 235 CEAFLRHKVALISPTVLKENGIPFNCMTQEAGEFMVTFPYGYHAGFNHGFNCAEAINFAT 294
L V +++P VL E+G+P Q AGEF+VTFP YH+GFN G+N AEA+NF T
Sbjct: 529 QPDLLHQLVTIMNPNVLMEHGVPVYRTNQCAGEFVVTFPRAYHSGFNQGYNFAEAVNFCT 588
Query: 295 PRWIDYGK 302
W+ G+
Sbjct: 589 ADWLPIGR 596
Score = 30.8 bits (68), Expect = 3.0
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 18 FYPTMEEFADFNTYVAYMESQGAHQAGLAKVIPPKEWK 55
F P+ EEF D +++ + A + G+ K+ PPK+W+
Sbjct: 22 FEPSWEEFTDPLSFIGRIRPL-AEKTGICKIRPPKDWQ 58
>gi|226442991 jumonji, AT rich interactive domain 1D isoform 1 [Homo
sapiens]
Length = 1570
Score = 143 bits (361), Expect = 3e-34
Identities = 94/296 (31%), Positives = 137/296 (46%), Gaps = 32/296 (10%)
Query: 75 VTSGQGGVFTQYHKKKKAMRVGQYRRLANSKKYQTPPHQN-----FADLEQRYWKSH--- 126
V+S + V +Y + G ++NSK+ +P + L +W
Sbjct: 419 VSSIEEDVTVEYGADIHSKEFGSGFPVSNSKQNLSPEEKRQSLTVLTRLISSFWAQAVLP 478
Query: 127 PGNPPIYGADISGSLFEESTKQWNLGHLGTILDLLEQECGVVIEGVNTPYLYFGMWKTTF 186
P P + G L E +T WNL + + + I G+ P+LY GM + F
Sbjct: 479 PWPPKVLG------LQEYATSGWNLNVMPVLDQSVLCHINADISGMKVPWLYVGMVFSAF 532
Query: 187 AWHTEDMDLYSINYLHFGEPKTWYVVPPEHGQHLERLARELFPDISRGCEAFLRHKVALI 246
WH ED YSINYLH+GEPKTWY VP +HLE + + L P++ L V L+
Sbjct: 533 CWHIEDHWSYSINYLHWGEPKTWYGVPSLAAEHLEEVMKMLTPELFDSQPDLLHQLVTLM 592
Query: 247 SPTVLKENGIPFNCMTQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWI-------- 298
+P L +G+P Q AGEF++TFP YH+GFN G+N AEA+NF T W+
Sbjct: 593 NPNTLMSHGVPVVRTNQCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTADWLPAGRQCIE 652
Query: 299 DYGKMASQCSCGESTVTFSMDPFVRIVQPESYELWKHRQDLAIVEHTEPRVAESQE 354
Y ++ C + M F PE+ +L +LA+ H E + +E
Sbjct: 653 HYRRLRRYCVFSHEELICKMAAF-----PETLDL-----NLAVAVHKEMFIMVQEE 698
>gi|226442963 jumonji, AT rich interactive domain 1C isoform 2 [Homo
sapiens]
Length = 1379
Score = 142 bits (358), Expect = 7e-34
Identities = 68/160 (42%), Positives = 93/160 (58%)
Query: 143 EESTKQWNLGHLGTILDLLEQECGVVIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLH 202
E +T WNL + + + I G+ P+LY GM + F WH ED YSINYLH
Sbjct: 401 EYATSGWNLNVMPVLEQSVLCHINADISGMKVPWLYVGMVFSAFCWHIEDHWSYSINYLH 460
Query: 203 FGEPKTWYVVPPEHGQHLERLARELFPDISRGCEAFLRHKVALISPTVLKENGIPFNCMT 262
+GEPKTWY VP +HLE + ++L P++ L V L++P L +G+P
Sbjct: 461 WGEPKTWYGVPSLAAEHLEEVMKKLTPELFDSQPDLLHQLVTLMNPNTLMSHGVPVVRTN 520
Query: 263 QEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDYGK 302
Q AGEF++TFP YH+GFN G+N AEA+NF T W+ G+
Sbjct: 521 QCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTADWLPAGR 560
>gi|109255243 jumonji, AT rich interactive domain 1C isoform 1 [Homo
sapiens]
Length = 1560
Score = 142 bits (358), Expect = 7e-34
Identities = 68/160 (42%), Positives = 93/160 (58%)
Query: 143 EESTKQWNLGHLGTILDLLEQECGVVIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLH 202
E +T WNL + + + I G+ P+LY GM + F WH ED YSINYLH
Sbjct: 468 EYATSGWNLNVMPVLEQSVLCHINADISGMKVPWLYVGMVFSAFCWHIEDHWSYSINYLH 527
Query: 203 FGEPKTWYVVPPEHGQHLERLARELFPDISRGCEAFLRHKVALISPTVLKENGIPFNCMT 262
+GEPKTWY VP +HLE + ++L P++ L V L++P L +G+P
Sbjct: 528 WGEPKTWYGVPSLAAEHLEEVMKKLTPELFDSQPDLLHQLVTLMNPNTLMSHGVPVVRTN 587
Query: 263 QEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDYGK 302
Q AGEF++TFP YH+GFN G+N AEA+NF T W+ G+
Sbjct: 588 QCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTADWLPAGR 627
>gi|226443002 jumonji, AT rich interactive domain 1D isoform 3 [Homo
sapiens]
Length = 1482
Score = 141 bits (356), Expect = 1e-33
Identities = 95/303 (31%), Positives = 137/303 (45%), Gaps = 41/303 (13%)
Query: 83 FTQYHKKKKAMRVGQYRRLANSKKYQTPPHQNFADL-EQRYWK---SHPGNPPI-YGADI 137
F Q ++ G+ S + P H +L E+ +W+ S + + YGADI
Sbjct: 318 FEQATQEYSLQSFGEMADSFKSDYFNMPVHMVPTELVEKEFWRLVSSIEEDVTVEYGADI 377
Query: 138 SGSLF------------------EESTKQWNLGHLGTILDLLEQECGVVIEGVNTPYLYF 179
F E +T WNL + + + I G+ P+LY
Sbjct: 378 HSKEFGSGFPVSNSKQNLSPEEKEYATSGWNLNVMPVLDQSVLCHINADISGMKVPWLYV 437
Query: 180 GMWKTTFAWHTEDMDLYSINYLHFGEPKTWYVVPPEHGQHLERLARELFPDISRGCEAFL 239
GM + F WH ED YSINYLH+GEPKTWY VP +HLE + + L P++ L
Sbjct: 438 GMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSLAAEHLEEVMKMLTPELFDSQPDLL 497
Query: 240 RHKVALISPTVLKENGIPFNCMTQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWI- 298
V L++P L +G+P Q AGEF++TFP YH+GFN G+N AEA+NF T W+
Sbjct: 498 HQLVTLMNPNTLMSHGVPVVRTNQCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTADWLP 557
Query: 299 -------DYGKMASQCSCGESTVTFSMDPFVRIVQPESYELWKHRQDLAIVEHTEPRVAE 351
Y ++ C + M F PE+ +L +LA+ H E +
Sbjct: 558 AGRQCIEHYRRLRRYCVFSHEELICKMAAF-----PETLDL-----NLAVAVHKEMFIMV 607
Query: 352 SQE 354
+E
Sbjct: 608 QEE 610
>gi|33356560 jumonji, AT rich interactive domain 1D isoform 2 [Homo
sapiens]
Length = 1539
Score = 141 bits (356), Expect = 1e-33
Identities = 95/303 (31%), Positives = 137/303 (45%), Gaps = 41/303 (13%)
Query: 83 FTQYHKKKKAMRVGQYRRLANSKKYQTPPHQNFADL-EQRYWK---SHPGNPPI-YGADI 137
F Q ++ G+ S + P H +L E+ +W+ S + + YGADI
Sbjct: 375 FEQATQEYSLQSFGEMADSFKSDYFNMPVHMVPTELVEKEFWRLVSSIEEDVTVEYGADI 434
Query: 138 SGSLF------------------EESTKQWNLGHLGTILDLLEQECGVVIEGVNTPYLYF 179
F E +T WNL + + + I G+ P+LY
Sbjct: 435 HSKEFGSGFPVSNSKQNLSPEEKEYATSGWNLNVMPVLDQSVLCHINADISGMKVPWLYV 494
Query: 180 GMWKTTFAWHTEDMDLYSINYLHFGEPKTWYVVPPEHGQHLERLARELFPDISRGCEAFL 239
GM + F WH ED YSINYLH+GEPKTWY VP +HLE + + L P++ L
Sbjct: 495 GMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSLAAEHLEEVMKMLTPELFDSQPDLL 554
Query: 240 RHKVALISPTVLKENGIPFNCMTQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWI- 298
V L++P L +G+P Q AGEF++TFP YH+GFN G+N AEA+NF T W+
Sbjct: 555 HQLVTLMNPNTLMSHGVPVVRTNQCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTADWLP 614
Query: 299 -------DYGKMASQCSCGESTVTFSMDPFVRIVQPESYELWKHRQDLAIVEHTEPRVAE 351
Y ++ C + M F PE+ +L +LA+ H E +
Sbjct: 615 AGRQCIEHYRRLRRYCVFSHEELICKMAAF-----PETLDL-----NLAVAVHKEMFIMV 664
Query: 352 SQE 354
+E
Sbjct: 665 QEE 667
>gi|57242796 jumonji, AT rich interactive domain 1B [Homo sapiens]
Length = 1544
Score = 133 bits (335), Expect = 3e-31
Identities = 64/154 (41%), Positives = 90/154 (58%)
Query: 149 WNLGHLGTILDLLEQECGVVIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHFGEPKT 208
WNL ++ + + I G+ P+LY GM ++F WH ED YSINYLH+GEPKT
Sbjct: 459 WNLNNMPVMEQSVLAHITADICGMKLPWLYVGMCFSSFCWHIEDHWSYSINYLHWGEPKT 518
Query: 209 WYVVPPEHGQHLERLARELFPDISRGCEAFLRHKVALISPTVLKENGIPFNCMTQEAGEF 268
WY VP + LE + ++L P++ L V +++P L + +P Q AGEF
Sbjct: 519 WYGVPGYAAEQLENVMKKLAPELFVSQPDLLHQLVTIMNPNTLMTHEVPVYRTNQCAGEF 578
Query: 269 MVTFPYGYHAGFNHGFNCAEAINFATPRWIDYGK 302
++TFP YH+GFN GFN AEA+NF T W+ G+
Sbjct: 579 VITFPRAYHSGFNQGFNFAEAVNFCTVDWLPLGR 612
Score = 30.4 bits (67), Expect = 4.0
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 18 FYPTMEEFADFNTYVAYMESQGAHQAGLAKVIPPKEWK 55
F P+ EEFAD ++ + A Q G+ KV PP +W+
Sbjct: 35 FEPSWEEFADPFAFIHKIRPI-AEQTGICKVRPPPDWQ 71
>gi|169218173 PREDICTED: similar to Jumonji, AT rich interactive
domain 1B (RBP2-like), partial [Homo sapiens]
Length = 977
Score = 133 bits (335), Expect = 3e-31
Identities = 64/154 (41%), Positives = 90/154 (58%)
Query: 149 WNLGHLGTILDLLEQECGVVIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHFGEPKT 208
WNL ++ + + I G+ P+LY GM ++F WH ED YSINYLH+GEPKT
Sbjct: 459 WNLNNMPVMEQSVLAHITADICGMKLPWLYVGMCFSSFCWHIEDHWSYSINYLHWGEPKT 518
Query: 209 WYVVPPEHGQHLERLARELFPDISRGCEAFLRHKVALISPTVLKENGIPFNCMTQEAGEF 268
WY VP + LE + ++L P++ L V +++P L + +P Q AGEF
Sbjct: 519 WYGVPGYAAEQLENVMKKLAPELFVSQPDLLHQLVTIMNPNTLMTHEVPVYRTNQCAGEF 578
Query: 269 MVTFPYGYHAGFNHGFNCAEAINFATPRWIDYGK 302
++TFP YH+GFN GFN AEA+NF T W+ G+
Sbjct: 579 VITFPRAYHSGFNQGFNFAEAVNFCTVDWLPLGR 612
Score = 30.4 bits (67), Expect = 4.0
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 18 FYPTMEEFADFNTYVAYMESQGAHQAGLAKVIPPKEWK 55
F P+ EEFAD ++ + A Q G+ KV PP +W+
Sbjct: 35 FEPSWEEFADPFAFIHKIRPI-AEQTGICKVRPPPDWQ 71
>gi|11863152 jumonji, AT rich interactive domain 2 protein [Homo
sapiens]
Length = 1246
Score = 80.1 bits (196), Expect = 4e-15
Identities = 74/270 (27%), Positives = 118/270 (43%), Gaps = 25/270 (9%)
Query: 81 GVFTQYHK---KKKAMRVGQYRRLAN---SKKYQTPPHQNFADLEQRYWKS--------- 125
GV +HK K +++ + + R A S + P A++EQ YW+
Sbjct: 805 GVLNDFHKCIYKGRSVSLTTFYRTARNIMSMCFSKEPAP--AEIEQEYWRLVEEKDCHVA 862
Query: 126 -HPG--NPPIYGADISGSLFEESTKQ-WNLGHLGTILDLLEQECGVVIEGVNTPYLYFGM 181
H G + +G+ E ++ WNL L + + G V GV P+L GM
Sbjct: 863 VHCGKVDTNTHGSGFPVGKSEPFSRHGWNLTVLPNNTGSILRHLGAV-PGVTIPWLNIGM 921
Query: 182 WKTTFAWHTEDMDLYSINYLHFGEPKTWYVVPPEHGQHLERLARELFPDISRGCEAFLRH 241
+T W + L I+YLH G WY +P E LE + L L
Sbjct: 922 VFSTSCWSRDQNHLPYIDYLHTGADCIWYCIPAEEENKLEDVVHTLLQANGTPGLQMLES 981
Query: 242 KVALISPTVLKENGIPFNCMTQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDYG 301
V +ISP VL + GI + Q++G+F+V FP + + G++ +E ++FAT +W G
Sbjct: 982 NV-MISPEVLCKEGIKVHRTVQQSGQFVVCFPGSFVSKVCCGYSVSETVHFATTQWTSMG 1040
Query: 302 -KMASQCSCGESTVTFSMDPFV-RIVQPES 329
+ A + FSM+ + +I Q E+
Sbjct: 1041 FETAKEMKRRHIAKPFSMEKLLYQIAQAEA 1070
Score = 29.6 bits (65), Expect = 6.7
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 20 PTMEEFADFNTYVAYMESQGAHQAGLAKVIPPKEWKARQMYDDIEDILIATPLQQV 75
P+ +EF D Y+ + +Q + G+ +VIPP +W+ +D ++ T +Q +
Sbjct: 562 PSAKEFHDPLIYIESVRAQ-VEKFGMCRVIPPPDWRPECKLND--EMRFVTQIQHI 614
>gi|7710145 methyl-CpG binding domain protein 2 testis-specific
isoform [Homo sapiens]
Length = 302
Score = 39.3 bits (90), Expect = 0.009
Identities = 17/24 (70%), Positives = 19/24 (79%)
Query: 433 GSWGSGRGRGRGQGQGRGCSRGRG 456
G G GRGRGRG+G+GRG RGRG
Sbjct: 72 GVCGRGRGRGRGRGRGRGRGRGRG 95
Score = 38.9 bits (89), Expect = 0.011
Identities = 16/21 (76%), Positives = 18/21 (85%)
Query: 438 GRGRGRGQGQGRGCSRGRGHG 458
GRGRGRG+G+GRG RGRG G
Sbjct: 75 GRGRGRGRGRGRGRGRGRGRG 95
Score = 36.2 bits (82), Expect = 0.072
Identities = 29/84 (34%), Positives = 32/84 (38%), Gaps = 7/84 (8%)
Query: 381 CPTQPVSSGHCYNPKGCGTDAVPGSAFQSSAYHTQTQSLTLGMSARVLLPSTGSW----- 435
CP Q G G D+ Q SA S AR G W
Sbjct: 11 CPEQEEGESAA-GGSGAGGDSAIEQGGQGSALAPSPVSGVRREGARGGGRGRGRWKQAGR 69
Query: 436 -GSGRGRGRGQGQGRGCSRGRGHG 458
G GRGRG+G+GRG RGRG G
Sbjct: 70 GGGVCGRGRGRGRGRGRGRGRGRG 93
Score = 36.2 bits (82), Expect = 0.072
Identities = 15/20 (75%), Positives = 17/20 (85%)
Query: 436 GSGRGRGRGQGQGRGCSRGR 455
G GRGRGRG+G+GRG RGR
Sbjct: 77 GRGRGRGRGRGRGRGRGRGR 96
Score = 33.1 bits (74), Expect = 0.61
Identities = 15/23 (65%), Positives = 17/23 (73%)
Query: 436 GSGRGRGRGQGQGRGCSRGRGHG 458
G GRGRGRG+G+GR S G G G
Sbjct: 83 GRGRGRGRGRGRGRPPSGGSGLG 105
Score = 32.3 bits (72), Expect = 1.0
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 436 GSGRGRGRGQGQGRGCSRGRGHG 458
G GRGRGRG+G+GRG G G
Sbjct: 81 GRGRGRGRGRGRGRGRPPSGGSG 103
Score = 30.0 bits (66), Expect = 5.2
Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 7/78 (8%)
Query: 389 GHCYNPKGCGTDAVPGSAFQSSAYHTQTQSLTLGMSARVLLPSTGSWGSGRG-RGRGQGQ 447
G C + G A GS + ++ G L PS S G RG G+G+
Sbjct: 8 GRCCPEQEEGESAAGGSGAGGDS------AIEQGGQGSALAPSPVSGVRREGARGGGRGR 61
Query: 448 GRGCSRGRGHGCCTRELG 465
GR GRG G C R G
Sbjct: 62 GRWKQAGRGGGVCGRGRG 79
>gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo
sapiens]
Length = 411
Score = 39.3 bits (90), Expect = 0.009
Identities = 17/24 (70%), Positives = 19/24 (79%)
Query: 433 GSWGSGRGRGRGQGQGRGCSRGRG 456
G G GRGRGRG+G+GRG RGRG
Sbjct: 72 GVCGRGRGRGRGRGRGRGRGRGRG 95
Score = 38.9 bits (89), Expect = 0.011
Identities = 16/21 (76%), Positives = 18/21 (85%)
Query: 438 GRGRGRGQGQGRGCSRGRGHG 458
GRGRGRG+G+GRG RGRG G
Sbjct: 75 GRGRGRGRGRGRGRGRGRGRG 95
Score = 36.2 bits (82), Expect = 0.072
Identities = 29/84 (34%), Positives = 32/84 (38%), Gaps = 7/84 (8%)
Query: 381 CPTQPVSSGHCYNPKGCGTDAVPGSAFQSSAYHTQTQSLTLGMSARVLLPSTGSW----- 435
CP Q G G D+ Q SA S AR G W
Sbjct: 11 CPEQEEGESAA-GGSGAGGDSAIEQGGQGSALAPSPVSGVRREGARGGGRGRGRWKQAGR 69
Query: 436 -GSGRGRGRGQGQGRGCSRGRGHG 458
G GRGRG+G+GRG RGRG G
Sbjct: 70 GGGVCGRGRGRGRGRGRGRGRGRG 93
Score = 36.2 bits (82), Expect = 0.072
Identities = 15/20 (75%), Positives = 17/20 (85%)
Query: 436 GSGRGRGRGQGQGRGCSRGR 455
G GRGRGRG+G+GRG RGR
Sbjct: 77 GRGRGRGRGRGRGRGRGRGR 96
Score = 33.1 bits (74), Expect = 0.61
Identities = 15/23 (65%), Positives = 17/23 (73%)
Query: 436 GSGRGRGRGQGQGRGCSRGRGHG 458
G GRGRGRG+G+GR S G G G
Sbjct: 83 GRGRGRGRGRGRGRPPSGGSGLG 105
Score = 32.3 bits (72), Expect = 1.0
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 436 GSGRGRGRGQGQGRGCSRGRGHG 458
G GRGRGRG+G+GRG G G
Sbjct: 81 GRGRGRGRGRGRGRGRPPSGGSG 103
Score = 30.0 bits (66), Expect = 5.2
Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 7/78 (8%)
Query: 389 GHCYNPKGCGTDAVPGSAFQSSAYHTQTQSLTLGMSARVLLPSTGSWGSGRG-RGRGQGQ 447
G C + G A GS + ++ G L PS S G RG G+G+
Sbjct: 8 GRCCPEQEEGESAAGGSGAGGDS------AIEQGGQGSALAPSPVSGVRREGARGGGRGR 61
Query: 448 GRGCSRGRGHGCCTRELG 465
GR GRG G C R G
Sbjct: 62 GRWKQAGRGGGVCGRGRG 79
>gi|169160654 PREDICTED: similar to small nuclear ribonucleoprotein
D1 polypeptide 16kDa [Homo sapiens]
Length = 119
Score = 37.0 bits (84), Expect = 0.042
Identities = 15/20 (75%), Positives = 18/20 (90%)
Query: 437 SGRGRGRGQGQGRGCSRGRG 456
+GRGRGRG+G+GRG RGRG
Sbjct: 96 AGRGRGRGRGRGRGRGRGRG 115
Score = 34.7 bits (78), Expect = 0.21
Identities = 14/19 (73%), Positives = 16/19 (84%)
Query: 440 GRGRGQGQGRGCSRGRGHG 458
GRGRG+G+GRG RGRG G
Sbjct: 97 GRGRGRGRGRGRGRGRGRG 115
Score = 31.6 bits (70), Expect = 1.8
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 436 GSGRGRGRGQGQGRGCSR 453
G GRGRGRG+G+GRG R
Sbjct: 101 GRGRGRGRGRGRGRGGPR 118
>gi|5902102 small nuclear ribonucleoprotein D1 polypeptide 16kDa
[Homo sapiens]
Length = 119
Score = 37.0 bits (84), Expect = 0.042
Identities = 15/20 (75%), Positives = 18/20 (90%)
Query: 437 SGRGRGRGQGQGRGCSRGRG 456
+GRGRGRG+G+GRG RGRG
Sbjct: 96 AGRGRGRGRGRGRGRGRGRG 115
Score = 34.7 bits (78), Expect = 0.21
Identities = 14/19 (73%), Positives = 16/19 (84%)
Query: 440 GRGRGQGQGRGCSRGRGHG 458
GRGRG+G+GRG RGRG G
Sbjct: 97 GRGRGRGRGRGRGRGRGRG 115
Score = 31.6 bits (70), Expect = 1.8
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 436 GSGRGRGRGQGQGRGCSR 453
G GRGRGRG+G+GRG R
Sbjct: 101 GRGRGRGRGRGRGRGGPR 118
>gi|110681708 zinc finger protein 579 [Homo sapiens]
Length = 562
Score = 36.6 bits (83), Expect = 0.055
Identities = 15/20 (75%), Positives = 17/20 (85%)
Query: 439 RGRGRGQGQGRGCSRGRGHG 458
RGRGRG+G+GRG RGRG G
Sbjct: 16 RGRGRGRGRGRGRGRGRGRG 35
Score = 36.6 bits (83), Expect = 0.055
Identities = 15/19 (78%), Positives = 17/19 (89%)
Query: 438 GRGRGRGQGQGRGCSRGRG 456
GRGRGRG+G+GRG RGRG
Sbjct: 17 GRGRGRGRGRGRGRGRGRG 35
Score = 34.7 bits (78), Expect = 0.21
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 430 PSTGSWGSGRGRGRGQGQGRGCSRGRGHG 458
P + GS RGRG+G+GRG RGRG G
Sbjct: 5 PPPPAQGSPPHRGRGRGRGRGRGRGRGRG 33
>gi|90403598 mesoderm posterior 2 homolog [Homo sapiens]
Length = 397
Score = 35.4 bits (80), Expect = 0.12
Identities = 14/27 (51%), Positives = 21/27 (77%)
Query: 432 TGSWGSGRGRGRGQGQGRGCSRGRGHG 458
T + G G+G+G+GQGQG+G +G+G G
Sbjct: 175 TQAEGQGQGQGQGQGQGQGQGQGQGQG 201
Score = 35.0 bits (79), Expect = 0.16
Identities = 13/23 (56%), Positives = 19/23 (82%)
Query: 436 GSGRGRGRGQGQGRGCSRGRGHG 458
G G+G+G+GQGQG+G +G+G G
Sbjct: 181 GQGQGQGQGQGQGQGQGQGQGQG 203
Score = 35.0 bits (79), Expect = 0.16
Identities = 13/23 (56%), Positives = 19/23 (82%)
Query: 436 GSGRGRGRGQGQGRGCSRGRGHG 458
G G+G+G+GQGQG+G +G+G G
Sbjct: 183 GQGQGQGQGQGQGQGQGQGQGQG 205
Score = 32.7 bits (73), Expect = 0.80
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 436 GSGRGRGRGQGQGRGCSRGRGHG 458
G G+G+G+GQGQG+G +GR G
Sbjct: 187 GQGQGQGQGQGQGQGQGQGRRPG 209
>gi|134031945 SCO-spondin [Homo sapiens]
Length = 5147
Score = 35.4 bits (80), Expect = 0.12
Identities = 33/115 (28%), Positives = 44/115 (38%), Gaps = 12/115 (10%)
Query: 386 VSSGHCYNPKGCGTDAVPGSAFQSSAYHTQTQSLTLGMSARVLLPST-------GSWG-- 436
V GHC G PGS Q + + Q+ L +A+ P T +W
Sbjct: 4112 VPIGHCDCTDAQGHSWAPGSQHQDACNNCSCQAGQLSCTAQPCPPPTHCAWSHWSAWSPC 4171
Query: 437 --SGRGRGRGQGQGRGCSRGRGHGCCTRELGTEEPTVQPASKRRLLMGTRSRAQG 489
S RG+ Q + R + G C E +P QP+ L GTRSR G
Sbjct: 4172 SHSCGPRGQ-QSRFRSSTSGSWAPECREEQSQSQPCPQPSCPPLCLQGTRSRTLG 4225
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.134 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,207,836
Number of Sequences: 37866
Number of extensions: 1081261
Number of successful extensions: 4571
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 3960
Number of HSP's gapped (non-prelim): 444
length of query: 506
length of database: 18,247,518
effective HSP length: 107
effective length of query: 399
effective length of database: 14,195,856
effective search space: 5664146544
effective search space used: 5664146544
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.