Guide to the Human Genome
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Name: KDM4C Sequence: fasta or formatted (835aa) NCBI GI: 226442897
Description:

jumonji domain containing 2C isoform 4

Referenced in:

Histones, Related Proteins, and Modifying Enzymes
PHD Finger Proteins

Other entries for this name:
alt prot [1056aa] jumonji domain containing 2C isoform 1
alt prot [1047aa] jumonji domain containing 2C isoform 2
alt prot [813aa] jumonji domain containing 2C isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         59           3
 C cysteine            3.0         25           2
 D aspartate           4.9         41           2
 E glutamate           9.9         83           4
 F phenylalanine       3.1         26           2
 G glycine             5.0         42           2
 H histidine           2.2         18           1
 I isoleucine          5.0         42           1
 K lysine              7.2         60           2
 L leucine             6.6         55           2
 M methionine          2.3         19           1
 N asparagine          4.0         33           2
 P proline             6.6         55           2
 Q glutamine           2.9         24           2
 R arginine            4.9         41           3
 S serine              8.7         73           3
 T threonine           5.4         45           2
 V valine              5.5         46           2
 W tryptophan          2.2         18           1
 Y tyrosine            3.6         30           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   jumonji domain containing 2C isoform 4 
KDM4C                 0.974   jumonji domain containing 2C isoform 3 
KDM4C                 0.968   jumonji domain containing 2C isoform 2 
KDM4C                 0.968   jumonji domain containing 2C isoform 1 
KDM4B                 0.498   jumonji domain containing 2B 
KDM4A                 0.495   jumonji domain containing 2A 
KDM4D                 0.291   jumonji domain containing 2D 
LOC100129053          0.285   PREDICTED: hypothetical protein 
LOC100129053          0.285   PREDICTED: hypothetical protein 
LOC100129053          0.285   PREDICTED: hypothetical protein 
LOC390245             0.284   PREDICTED: hypothetical protein 
LOC390245             0.284   PREDICTED: hypothetical protein 
LOC390245             0.284   PREDICTED: hypothetical protein 
KDM5A                 0.070   retinoblastoma binding protein 2 isoform 1 
KDM5A                 0.070   retinoblastoma binding protein 2 isoform 2 
KDM5C                 0.066   jumonji, AT rich interactive domain 1C isoform 2 [H...
KDM5C                 0.066   jumonji, AT rich interactive domain 1C isoform 1 [H...
KDM5D                 0.065   jumonji, AT rich interactive domain 1D isoform 3 [H...
KDM5D                 0.065   jumonji, AT rich interactive domain 1D isoform 2 [Ho...
KDM5B                 0.063   jumonji, AT rich interactive domain 1B 
LOC100133760          0.063   PREDICTED: similar to Jumonji, AT rich interactive ...
KDM5D                 0.062   jumonji, AT rich interactive domain 1D isoform 1 [H...
BRPF1                 0.039   bromodomain and PHD finger-containing protein 1 isof...
BRPF1                 0.039   bromodomain and PHD finger-containing protein 1 isof...
JARID2                0.033   jumonji, AT rich interactive domain 2 protein 
BRD1                  0.031   bromodomain containing protein 1 
BRPF3                 0.029   bromodomain and PHD finger containing, 3 
MLLT10                0.028   myeloid/lymphoid or mixed-lineage leukemia transloca...
MLLT10                0.028   myeloid/lymphoid or mixed-lineage leukemia translocat...
MLLT6                 0.026   myeloid/lymphoid or mixed-lineage leukemia (trithora...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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