Guide to the Human Genome
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Name: KDM4C Sequence: fasta or formatted (1056aa) NCBI GI: 109255247
Description:

jumonji domain containing 2C isoform 1

Referenced in:

Histones, Related Proteins, and Modifying Enzymes
PHD Finger Proteins

Other entries for this name:
alt prot [1047aa] jumonji domain containing 2C isoform 2
alt prot [813aa] jumonji domain containing 2C isoform 3
alt prot [835aa] jumonji domain containing 2C isoform 4
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         70           2
 C cysteine            3.4         36           2
 D aspartate           5.2         55           2
 E glutamate           9.0         95           4
 F phenylalanine       3.9         41           2
 G glycine             4.9         52           2
 H histidine           2.2         23           1
 I isoleucine          4.8         51           2
 K lysine              7.4         78           2
 L leucine             5.7         60           2
 M methionine          2.3         24           1
 N asparagine          3.7         39           2
 P proline             6.1         64           2
 Q glutamine           3.3         35           2
 R arginine            5.6         59           3
 S serine              8.6         91           3
 T threonine           5.1         54           2
 V valine              6.5         69           2
 W tryptophan          1.8         19           1
 Y tyrosine            3.9         41           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   jumonji domain containing 2C isoform 1 
KDM4C                 0.948   jumonji domain containing 2C isoform 2 
KDM4C                 0.762   jumonji domain containing 2C isoform 3 
KDM4C                 0.762   jumonji domain containing 2C isoform 4 
KDM4A                 0.535   jumonji domain containing 2A 
KDM4B                 0.515   jumonji domain containing 2B 
KDM4D                 0.229   jumonji domain containing 2D 
LOC100129053          0.225   PREDICTED: hypothetical protein 
LOC100129053          0.225   PREDICTED: hypothetical protein 
LOC100129053          0.225   PREDICTED: hypothetical protein 
LOC390245             0.224   PREDICTED: hypothetical protein 
LOC390245             0.224   PREDICTED: hypothetical protein 
LOC390245             0.224   PREDICTED: hypothetical protein 
KDM5A                 0.055   retinoblastoma binding protein 2 isoform 1 
KDM5A                 0.055   retinoblastoma binding protein 2 isoform 2 
KDM5C                 0.052   jumonji, AT rich interactive domain 1C isoform 2 [H...
KDM5C                 0.052   jumonji, AT rich interactive domain 1C isoform 1 [H...
KDM5D                 0.051   jumonji, AT rich interactive domain 1D isoform 3 [H...
KDM5D                 0.051   jumonji, AT rich interactive domain 1D isoform 2 [Ho...
KDM5B                 0.050   jumonji, AT rich interactive domain 1B 
LOC100133760          0.050   PREDICTED: similar to Jumonji, AT rich interactive ...
KDM5D                 0.049   jumonji, AT rich interactive domain 1D isoform 1 [H...
BRPF1                 0.049   bromodomain and PHD finger-containing protein 1 isof...
BRPF1                 0.049   bromodomain and PHD finger-containing protein 1 isof...
BRD1                  0.041   bromodomain containing protein 1 
BRPF3                 0.037   bromodomain and PHD finger containing, 3 
MLLT6                 0.037   myeloid/lymphoid or mixed-lineage leukemia (trithora...
MLLT10                0.037   myeloid/lymphoid or mixed-lineage leukemia transloca...
MLLT10                0.037   myeloid/lymphoid or mixed-lineage leukemia translocat...
PHF16                 0.036   PHD finger protein 16 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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