Search of human proteins with 239744029

Search of human proteins with 239744029

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239744029 PREDICTED: hypothetical protein [Homo sapiens]
         (124 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239755230 PREDICTED: hypothetical protein [Homo sapiens]           261   1e-70
gi|239749770 PREDICTED: hypothetical protein [Homo sapiens]           261   1e-70
gi|239744029 PREDICTED: hypothetical protein [Homo sapiens]           261   1e-70
gi|33457336 chromosome 14 open reading frame 4 [Homo sapiens]          40   5e-04
gi|239749538 PREDICTED: hypothetical protein XP_002347080 [Homo ...    37   0.004
gi|239743688 PREDICTED: hypothetical protein XP_002342946 [Homo ...    37   0.004
gi|239750468 PREDICTED: similar to Os05g0242100 [Homo sapiens]         35   0.015
gi|195972903 zinc finger protein 385A isoform a [Homo sapiens]         35   0.019
gi|24308079 zinc finger protein 385A isoform c [Homo sapiens]          35   0.019
gi|120587019 zinc finger protein 318 [Homo sapiens]                    35   0.019
gi|169171388 PREDICTED: hypothetical protein [Homo sapiens]            34   0.025
gi|239749096 PREDICTED: hypothetical protein [Homo sapiens]            34   0.025
gi|239744552 PREDICTED: hypothetical protein [Homo sapiens]            34   0.025
gi|239743123 PREDICTED: hypothetical protein [Homo sapiens]            34   0.025
gi|209413756 synapsin III isoform IIIg [Homo sapiens]                  34   0.025
gi|209413752 synapsin III isoform IIIa [Homo sapiens]                  34   0.025
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]     34   0.033
gi|115511036 alpha-kinase 3 [Homo sapiens]                             33   0.043
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]        33   0.043
gi|239755810 PREDICTED: hypothetical protein [Homo sapiens]            33   0.056
gi|169164483 PREDICTED: hypothetical protein [Homo sapiens]            33   0.056
gi|239750310 PREDICTED: hypothetical protein [Homo sapiens]            33   0.056
gi|113414226 PREDICTED: hypothetical protein [Homo sapiens]            33   0.056
gi|239744621 PREDICTED: hypothetical protein [Homo sapiens]            33   0.056
gi|113413437 PREDICTED: hypothetical protein [Homo sapiens]            33   0.056
gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens]         33   0.056
gi|29648305 zinc finger, CCHC domain containing 3 [Homo sapiens]       33   0.056
gi|37537554 hypothetical protein FLJ37538 [Homo sapiens]               33   0.056
gi|239756453 PREDICTED: hypothetical protein XP_002344992 [Homo ...    33   0.073
gi|239751471 PREDICTED: hypothetical protein XP_002347846 [Homo ...    33   0.073

>gi|239755230 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 124

 Score =  261 bits (666), Expect = 1e-70
 Identities = 124/124 (100%), Positives = 124/124 (100%)

Query: 1   MTAFQCGYGGARVWRSIDAPHGRGAPAGFRSPGSAAAYDPRSAQGMGPARSGGRRQRRGW 60
           MTAFQCGYGGARVWRSIDAPHGRGAPAGFRSPGSAAAYDPRSAQGMGPARSGGRRQRRGW
Sbjct: 1   MTAFQCGYGGARVWRSIDAPHGRGAPAGFRSPGSAAAYDPRSAQGMGPARSGGRRQRRGW 60

Query: 61  VSGRCRSMERGYRARPGAQKSFPVPRRRPLAPLPRSTLGTHASPGSGVGSRPSVPASGRS 120
           VSGRCRSMERGYRARPGAQKSFPVPRRRPLAPLPRSTLGTHASPGSGVGSRPSVPASGRS
Sbjct: 61  VSGRCRSMERGYRARPGAQKSFPVPRRRPLAPLPRSTLGTHASPGSGVGSRPSVPASGRS 120

Query: 121 QRRE 124
           QRRE
Sbjct: 121 QRRE 124


>gi|239749770 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 124

 Score =  261 bits (666), Expect = 1e-70
 Identities = 124/124 (100%), Positives = 124/124 (100%)

Query: 1   MTAFQCGYGGARVWRSIDAPHGRGAPAGFRSPGSAAAYDPRSAQGMGPARSGGRRQRRGW 60
           MTAFQCGYGGARVWRSIDAPHGRGAPAGFRSPGSAAAYDPRSAQGMGPARSGGRRQRRGW
Sbjct: 1   MTAFQCGYGGARVWRSIDAPHGRGAPAGFRSPGSAAAYDPRSAQGMGPARSGGRRQRRGW 60

Query: 61  VSGRCRSMERGYRARPGAQKSFPVPRRRPLAPLPRSTLGTHASPGSGVGSRPSVPASGRS 120
           VSGRCRSMERGYRARPGAQKSFPVPRRRPLAPLPRSTLGTHASPGSGVGSRPSVPASGRS
Sbjct: 61  VSGRCRSMERGYRARPGAQKSFPVPRRRPLAPLPRSTLGTHASPGSGVGSRPSVPASGRS 120

Query: 121 QRRE 124
           QRRE
Sbjct: 121 QRRE 124


>gi|239744029 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 124

 Score =  261 bits (666), Expect = 1e-70
 Identities = 124/124 (100%), Positives = 124/124 (100%)

Query: 1   MTAFQCGYGGARVWRSIDAPHGRGAPAGFRSPGSAAAYDPRSAQGMGPARSGGRRQRRGW 60
           MTAFQCGYGGARVWRSIDAPHGRGAPAGFRSPGSAAAYDPRSAQGMGPARSGGRRQRRGW
Sbjct: 1   MTAFQCGYGGARVWRSIDAPHGRGAPAGFRSPGSAAAYDPRSAQGMGPARSGGRRQRRGW 60

Query: 61  VSGRCRSMERGYRARPGAQKSFPVPRRRPLAPLPRSTLGTHASPGSGVGSRPSVPASGRS 120
           VSGRCRSMERGYRARPGAQKSFPVPRRRPLAPLPRSTLGTHASPGSGVGSRPSVPASGRS
Sbjct: 61  VSGRCRSMERGYRARPGAQKSFPVPRRRPLAPLPRSTLGTHASPGSGVGSRPSVPASGRS 120

Query: 121 QRRE 124
           QRRE
Sbjct: 121 QRRE 124


>gi|33457336 chromosome 14 open reading frame 4 [Homo sapiens]
          Length = 796

 Score = 40.0 bits (92), Expect = 5e-04
 Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 7/93 (7%)

Query: 19  APHGRGAPAGFRSPGSAAAYDPRSAQGMGPARSGGRRQRRGWVSGRCRS----MERGYRA 74
           AP GRGA A  R    A+   P SA+G    + G  +QR+ W++ +  +    M  G  A
Sbjct: 531 APSGRGAAASLRKR-KASPEPPDSAEGA--LKLGEEQQRQQWMANQSEALKLTMSAGGFA 587

Query: 75  RPGAQKSFPVPRRRPLAPLPRSTLGTHASPGSG 107
            PG     P P   PL P    T    ++P +G
Sbjct: 588 APGHAAGGPPPPPPPLGPHSNRTTPPESAPQNG 620


>gi|239749538 PREDICTED: hypothetical protein XP_002347080 [Homo
           sapiens]
          Length = 400

 Score = 37.0 bits (84), Expect = 0.004
 Identities = 35/113 (30%), Positives = 47/113 (41%), Gaps = 17/113 (15%)

Query: 7   GYGGARVWRSIDAPHGRGAPAGFRSPGSAAAYDPRSAQGMGPARSGGRRQRRGWVS---- 62
           G GG R  + +  P GRG       P S+    P + +   PA +GG+ +  G  S    
Sbjct: 131 GGGGERWLQGLGPPRGRGLSTA--PPPSSLRLLPPTPRPFPPAPAGGKGEGGGKESAVLW 188

Query: 63  -GRCRSMERGYR----------ARPGAQKSFPVPRRRPLAPLPRSTLGTHASP 104
            G     E+G R          AR  AQ    + RRRPL  +PR  L +  SP
Sbjct: 189 KGAEGGGEKGNRNMAAAPLGDPAREAAQAQTGLRRRRPLELVPRPALPSAPSP 241


>gi|239743688 PREDICTED: hypothetical protein XP_002342946 [Homo
           sapiens]
          Length = 400

 Score = 37.0 bits (84), Expect = 0.004
 Identities = 35/113 (30%), Positives = 47/113 (41%), Gaps = 17/113 (15%)

Query: 7   GYGGARVWRSIDAPHGRGAPAGFRSPGSAAAYDPRSAQGMGPARSGGRRQRRGWVS---- 62
           G GG R  + +  P GRG       P S+    P + +   PA +GG+ +  G  S    
Sbjct: 131 GGGGERWLQGLGPPRGRGLSTA--PPPSSLRLLPPTPRPFPPAPAGGKGEGGGKESAVLW 188

Query: 63  -GRCRSMERGYR----------ARPGAQKSFPVPRRRPLAPLPRSTLGTHASP 104
            G     E+G R          AR  AQ    + RRRPL  +PR  L +  SP
Sbjct: 189 KGAEGGGEKGNRNMAAAPLGDPAREAAQAQTGLRRRRPLELVPRPALPSAPSP 241


>gi|239750468 PREDICTED: similar to Os05g0242100 [Homo sapiens]
          Length = 758

 Score = 35.0 bits (79), Expect = 0.015
 Identities = 32/87 (36%), Positives = 37/87 (42%), Gaps = 13/87 (14%)

Query: 19  APHGRGAPAGFRS----PGSAAAYDPRSAQGMGPARSGGRRQRRGWVSGRCRSMER---- 70
           +P    APA  R+    P SA     R +QG  P R  GRRQRR     R R  +R    
Sbjct: 18  SPATPSAPAAQRALAEQPMSARLGPTRGSQGSAPGRRRGRRQRRHRRGLRARRPQRHGGS 77

Query: 71  GYRARPGAQKS-----FPVPRRRPLAP 92
           G  A  GA +       P  RRR  AP
Sbjct: 78  GTAAHAGAARQVASGFMPHRRRRRTAP 104



 Score = 30.8 bits (68), Expect = 0.28
 Identities = 28/71 (39%), Positives = 30/71 (42%), Gaps = 6/71 (8%)

Query: 41  RSAQGMGPARSGGRRQRRGWV-----SGRCRSMERGYRARPGAQKSFPVPRRRPLAPLPR 95
           R+A G  P  SG RRQ RG       SGR R      RA  GA  +   P   PL P PR
Sbjct: 101 RTAPGQ-PWASGFRRQGRGLSGPGAGSGRGRGGALIGRAGGGAMAAKTSPAMLPLPPRPR 159

Query: 96  STLGTHASPGS 106
              G  A   S
Sbjct: 160 FRFGAGAEEAS 170


>gi|195972903 zinc finger protein 385A isoform a [Homo sapiens]
          Length = 386

 Score = 34.7 bits (78), Expect = 0.019
 Identities = 37/116 (31%), Positives = 46/116 (39%), Gaps = 22/116 (18%)

Query: 11  ARVWRSIDAPHGRGAPAGFRSPGSAAAYDPRSAQGMGPARSGGRRQRRGWVSGRCRSMER 70
           AR  + I+A   RG   G R PG  A        G  P    G       V+ R  SME 
Sbjct: 99  ARRVKGIEAAKTRGREPGVREPGDPAP------PGSTPTNGDG-------VAPRPVSMEN 145

Query: 71  GYRARPGAQKSFPVPRRRPLAPLPRSTLGTHASPGSGVGSRPSVPAS--GRSQRRE 124
           G    PG+      P ++P +P P S   T      G G  P+ PAS  G S+  E
Sbjct: 146 GLGPAPGS------PEKQPGSPSPPSIPETGQGVTKGEGGTPA-PASLPGGSKEEE 194


>gi|24308079 zinc finger protein 385A isoform c [Homo sapiens]
          Length = 366

 Score = 34.7 bits (78), Expect = 0.019
 Identities = 37/116 (31%), Positives = 46/116 (39%), Gaps = 22/116 (18%)

Query: 11  ARVWRSIDAPHGRGAPAGFRSPGSAAAYDPRSAQGMGPARSGGRRQRRGWVSGRCRSMER 70
           AR  + I+A   RG   G R PG  A        G  P    G       V+ R  SME 
Sbjct: 79  ARRVKGIEAAKTRGREPGVREPGDPAP------PGSTPTNGDG-------VAPRPVSMEN 125

Query: 71  GYRARPGAQKSFPVPRRRPLAPLPRSTLGTHASPGSGVGSRPSVPAS--GRSQRRE 124
           G    PG+      P ++P +P P S   T      G G  P+ PAS  G S+  E
Sbjct: 126 GLGPAPGS------PEKQPGSPSPPSIPETGQGVTKGEGGTPA-PASLPGGSKEEE 174


>gi|120587019 zinc finger protein 318 [Homo sapiens]
          Length = 2279

 Score = 34.7 bits (78), Expect = 0.019
 Identities = 33/102 (32%), Positives = 39/102 (38%), Gaps = 9/102 (8%)

Query: 22  GRGAPAGFRSPGSAAAYDPRSAQGMGPARSGGRRQRRGWVSGRCRSMERGYRARPGAQKS 81
           G G P   RS GS++    RS+    P+ S  R   R     R  S  RG RA P     
Sbjct: 19  GGGGPRSGRSSGSSSGPARRSSPPPPPSGSSSRTPAR---RPRSPSGHRGRRASPSP--- 72

Query: 82  FPVPRRRPLAPLPRSTLGTHASPGSGVGSRPSVPASGRSQRR 123
              PR R ++P P        SP  G    P  PA  R   R
Sbjct: 73  ---PRGRRVSPSPPRARRGSPSPPRGRRLFPPGPAGFRGSSR 111


>gi|169171388 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 154

 Score = 34.3 bits (77), Expect = 0.025
 Identities = 23/68 (33%), Positives = 27/68 (39%)

Query: 20  PHGRGAPAGFRSPGSAAAYDPRSAQGMGPARSGGRRQRRGWVSGRCRSMERGYRARPGAQ 79
           P    AP  F+  G+AA  D  +A        GG    RG  S   R  ER     PGA+
Sbjct: 87  PQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGAR 146

Query: 80  KSFPVPRR 87
            S   P R
Sbjct: 147 SSAGEPER 154



 Score = 25.8 bits (55), Expect = 8.9
 Identities = 26/98 (26%), Positives = 32/98 (32%), Gaps = 10/98 (10%)

Query: 36  AAYDPRSAQGMGPARSGGRRQRRGWVSGRCRSMERGYRARPGAQKSFPVPRRRP------ 89
           +A + R     G    GG     G   G  R+ ER    RP  ++  P     P      
Sbjct: 40  SAKEDRDCDIKGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGD 99

Query: 90  --LAPLPRSTLGTHA--SPGSGVGSRPSVPASGRSQRR 123
              A     T G  A  +PG   G R    AS R   R
Sbjct: 100 GAAARADALTAGKSAEPAPGGEGGERGEESASERESER 137


>gi|239749096 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 154

 Score = 34.3 bits (77), Expect = 0.025
 Identities = 23/68 (33%), Positives = 27/68 (39%)

Query: 20  PHGRGAPAGFRSPGSAAAYDPRSAQGMGPARSGGRRQRRGWVSGRCRSMERGYRARPGAQ 79
           P    AP  F+  G+AA  D  +A        GG    RG  S   R  ER     PGA+
Sbjct: 87  PQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGAR 146

Query: 80  KSFPVPRR 87
            S   P R
Sbjct: 147 SSAGEPER 154



 Score = 25.8 bits (55), Expect = 8.9
 Identities = 26/98 (26%), Positives = 32/98 (32%), Gaps = 10/98 (10%)

Query: 36  AAYDPRSAQGMGPARSGGRRQRRGWVSGRCRSMERGYRARPGAQKSFPVPRRRP------ 89
           +A + R     G    GG     G   G  R+ ER    RP  ++  P     P      
Sbjct: 40  SAKEDRDCDIKGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGD 99

Query: 90  --LAPLPRSTLGTHA--SPGSGVGSRPSVPASGRSQRR 123
              A     T G  A  +PG   G R    AS R   R
Sbjct: 100 GAAARADALTAGKSAEPAPGGEGGERGEESASERESER 137


>gi|239744552 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 221

 Score = 34.3 bits (77), Expect = 0.025
 Identities = 37/130 (28%), Positives = 50/130 (38%), Gaps = 16/130 (12%)

Query: 5   QCGYGGARVWRSIDAPHGRGAPAGFRSPGSAAAYDPRSAQGMGPARSGGRRQRRGWVSGR 64
           Q G+GG  V     A  G     G R PG       R+AQ     R GG R+R    +  
Sbjct: 22  QPGWGGEEVQGLARA--GLATGKGQRPPGPGRV---RAAQARA-RRGGGARERPAEGARG 75

Query: 65  CRSMERGYRARPGAQKS----------FPVPRRRPLAPLPRSTLGTHASPGSGVGSRPSV 114
            R+   G RA P    +           P    RPLA  P S+     +PG+      S 
Sbjct: 76  PRAARGGARAAPMPSSAPRGPTEPALRRPSSAERPLAQAPSSSASVGRAPGAMASPSRSS 135

Query: 115 PASGRSQRRE 124
            A+G+ + R+
Sbjct: 136 EATGKPRGRD 145


>gi|239743123 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 123

 Score = 34.3 bits (77), Expect = 0.025
 Identities = 23/68 (33%), Positives = 27/68 (39%)

Query: 20  PHGRGAPAGFRSPGSAAAYDPRSAQGMGPARSGGRRQRRGWVSGRCRSMERGYRARPGAQ 79
           P    AP  F+  G+AA  D  +A        GG    RG  S   R  ER     PGA+
Sbjct: 56  PQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGAR 115

Query: 80  KSFPVPRR 87
            S   P R
Sbjct: 116 SSAGEPER 123


>gi|209413756 synapsin III isoform IIIg [Homo sapiens]
          Length = 579

 Score = 34.3 bits (77), Expect = 0.025
 Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 26/122 (21%)

Query: 9   GGARVWRSIDAPHGRGAPAGFRSPGSAAAYDPRSAQGMGPARSGGRRQRRGWVSGRCRSM 68
           G A++   +  P  R  P G           PR AQ   P RSG   Q+R    G+    
Sbjct: 420 GQAQLGPQLGQPQPRPPPQG----------GPRQAQSPQPQRSGSPSQQRLSPQGQ---- 465

Query: 69  ERGYRARP-GAQKSFPVPRRRPLAP-LPRSTLGTH----ASPGSGVGSRPSVPASGRSQR 122
                 +P   Q   P  +R P +P L R++ G+     + PG+ + S+P  P  GRS  
Sbjct: 466 ------QPLSPQSGSPQQQRSPGSPQLSRASSGSSPNQASKPGATLASQPRPPVQGRSTS 519

Query: 123 RE 124
           ++
Sbjct: 520 QQ 521


>gi|209413752 synapsin III isoform IIIa [Homo sapiens]
          Length = 580

 Score = 34.3 bits (77), Expect = 0.025
 Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 26/122 (21%)

Query: 9   GGARVWRSIDAPHGRGAPAGFRSPGSAAAYDPRSAQGMGPARSGGRRQRRGWVSGRCRSM 68
           G A++   +  P  R  P G           PR AQ   P RSG   Q+R    G+    
Sbjct: 421 GQAQLGPQLGQPQPRPPPQG----------GPRQAQSPQPQRSGSPSQQRLSPQGQ---- 466

Query: 69  ERGYRARP-GAQKSFPVPRRRPLAP-LPRSTLGTH----ASPGSGVGSRPSVPASGRSQR 122
                 +P   Q   P  +R P +P L R++ G+     + PG+ + S+P  P  GRS  
Sbjct: 467 ------QPLSPQSGSPQQQRSPGSPQLSRASSGSSPNQASKPGATLASQPRPPVQGRSTS 520

Query: 123 RE 124
           ++
Sbjct: 521 QQ 522


>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
          Length = 1669

 Score = 33.9 bits (76), Expect = 0.033
 Identities = 29/99 (29%), Positives = 36/99 (36%), Gaps = 11/99 (11%)

Query: 23  RGAPAGFRSPGSAAAYDPRSAQGMGPARSGGRRQRRGWVSGRCRSMERGYRARPGAQKSF 82
           RG P G   PGS     P    G GPA   G + + G+  G       G +  PG     
Sbjct: 585 RGPPGGVGFPGSRGDTGPPGPPGYGPAGPIGDKGQAGFPGGPGSPGLPGPKGEPGKIVPL 644

Query: 83  PVP------RRRPLAPLPRSTLGTHASPGSGVGSRPSVP 115
           P P         P  P P+   G   +PG     RP +P
Sbjct: 645 PGPPGAEGLPGSPGFPGPQGDRGFPGTPG-----RPGLP 678


>gi|115511036 alpha-kinase 3 [Homo sapiens]
          Length = 1907

 Score = 33.5 bits (75), Expect = 0.043
 Identities = 39/111 (35%), Positives = 46/111 (41%), Gaps = 10/111 (9%)

Query: 10  GARVWRSIDAPHGRGAPAGFRSPGSAAAYDPRSAQGMGPARSGGRRQRRGWVSGRCRSME 69
           GAR  R+  A  GRG  AG    G AAA     A G G A    R   RGW +G      
Sbjct: 164 GARQPRAGAAAAGRGPGAGAWRTGEAAA-SAGPAVGEGGAMGSRRAPSRGWGAGG----- 217

Query: 70  RGYRARPGAQKSFPVPRRRPLAPLPRSTLGTHASPGSGVGSRPSVPASGRS 120
              R+  G       P   P +P  RS L +     S   +R S P+SGRS
Sbjct: 218 ---RSGAGGDGEDDGPVWIP-SPASRSYLLSVRPETSLSSNRLSHPSSGRS 264


>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
          Length = 2752

 Score = 33.5 bits (75), Expect = 0.043
 Identities = 31/113 (27%), Positives = 42/113 (37%), Gaps = 3/113 (2%)

Query: 11  ARVWRSIDAPHGRGAPAGFRSPGSAAAYDPRSAQGMGPARSGGRRQRRGWVSGRCRSMER 70
           A+ W    +P  RG     + PG + + + +       AR G    R     GR RS   
Sbjct: 519 AQRWGRSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTP 578

Query: 71  GYRARPGAQKSFPVPRRRPLAPLPRSTLGTHASPGSGVGSRPSVPASGRSQRR 123
              AR G  +S    RRR  +  P        +P     SR   PA  RS+ R
Sbjct: 579 ---ARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTR 628



 Score = 30.4 bits (67), Expect = 0.36
 Identities = 24/83 (28%), Positives = 31/83 (37%)

Query: 41  RSAQGMGPARSGGRRQRRGWVSGRCRSMERGYRARPGAQKSFPVPRRRPLAPLPRSTLGT 100
           R ++   P R   R +     SGR RS     R R  ++      R R   P  RS    
Sbjct: 623 RRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSR 682

Query: 101 HASPGSGVGSRPSVPASGRSQRR 123
             +P     SR   P  GRS+ R
Sbjct: 683 SRTPARRGRSRSRTPRRGRSRSR 705



 Score = 26.2 bits (56), Expect = 6.9
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 83   PVPRRRPLA-PLPRSTLGTHASPGSGVGSRPSVPASGRSQRRE 124
            PV RRRP   P PR    + +  GS  G R    +    +RRE
Sbjct: 2695 PVERRRPSPQPSPRDQQSSSSERGSRRGQRGDSRSPSHKRRRE 2737


>gi|239755810 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 499

 Score = 33.1 bits (74), Expect = 0.056
 Identities = 36/114 (31%), Positives = 46/114 (40%), Gaps = 15/114 (13%)

Query: 6   CGYGGARVWRSIDAPHGRGAPAGFRSPGSAAAYDPRSAQGMGPARSGGRRQRRGWVSGRC 65
           C  GG     S+    GRG  AG R+P + + +DP + Q + P     RR R G      
Sbjct: 321 CSGGGVA---SMRISVGRGLRAGPRAPDAGSFWDP-NPQTLAPHPQASRRPRAGCSLSLQ 376

Query: 66  RSMERGYR-ARPGAQKSFPVPRRRPLAPLP---RSTLGTHASPGSGVGSRPSVP 115
              +RG R   P A       R  P  P P     TLG+H    + V  RP  P
Sbjct: 377 PPHQRGLRDGCPSA-----AGRLSPALPAPSPREVTLGSHVP--ARVSRRPCPP 423


>gi|169164483 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 324

 Score = 33.1 bits (74), Expect = 0.056
 Identities = 34/106 (32%), Positives = 41/106 (38%), Gaps = 14/106 (13%)

Query: 22  GRGAPAGFRSPGSAAAYDPRSAQGMGPARSGGRRQRR------GWVSGRCRSMERGYRAR 75
           G   P G    G      PR  +  GPAR   +++RR      G   G  R   RG  A 
Sbjct: 132 GDFGPKGIGMKGGGPGLPPRG-KASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAA 190

Query: 76  P----GAQKSFPVPRRRPLAPLPRSTLGTHASPGSGVGSRPSVPAS 117
                G + +   P RR   P PR  L    SP SG G  P+ P S
Sbjct: 191 AVGPTGPRPTGAPPSRRTPPPGPRRPL---RSPHSGSGWTPARPPS 233


>gi|239750310 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 499

 Score = 33.1 bits (74), Expect = 0.056
 Identities = 36/114 (31%), Positives = 46/114 (40%), Gaps = 15/114 (13%)

Query: 6   CGYGGARVWRSIDAPHGRGAPAGFRSPGSAAAYDPRSAQGMGPARSGGRRQRRGWVSGRC 65
           C  GG     S+    GRG  AG R+P + + +DP + Q + P     RR R G      
Sbjct: 321 CSGGGVA---SMRISVGRGLRAGPRAPDAGSFWDP-NPQTLAPHPQASRRPRAGCSLSLQ 376

Query: 66  RSMERGYR-ARPGAQKSFPVPRRRPLAPLP---RSTLGTHASPGSGVGSRPSVP 115
              +RG R   P A       R  P  P P     TLG+H    + V  RP  P
Sbjct: 377 PPHQRGLRDGCPSA-----AGRLSPALPAPSPREVTLGSHVP--ARVSRRPCPP 423


>gi|113414226 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 324

 Score = 33.1 bits (74), Expect = 0.056
 Identities = 34/106 (32%), Positives = 41/106 (38%), Gaps = 14/106 (13%)

Query: 22  GRGAPAGFRSPGSAAAYDPRSAQGMGPARSGGRRQRR------GWVSGRCRSMERGYRAR 75
           G   P G    G      PR  +  GPAR   +++RR      G   G  R   RG  A 
Sbjct: 132 GDFGPKGIGMKGGGPGLPPRG-KASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAA 190

Query: 76  P----GAQKSFPVPRRRPLAPLPRSTLGTHASPGSGVGSRPSVPAS 117
                G + +   P RR   P PR  L    SP SG G  P+ P S
Sbjct: 191 AVGPTGPRPTGAPPSRRTPPPGPRRPL---RSPHSGSGWTPARPPS 233


>gi|239744621 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 536

 Score = 33.1 bits (74), Expect = 0.056
 Identities = 36/114 (31%), Positives = 46/114 (40%), Gaps = 15/114 (13%)

Query: 6   CGYGGARVWRSIDAPHGRGAPAGFRSPGSAAAYDPRSAQGMGPARSGGRRQRRGWVSGRC 65
           C  GG     S+    GRG  AG R+P + + +DP + Q + P     RR R G      
Sbjct: 358 CSGGGVA---SMRISVGRGLRAGPRAPDAGSFWDP-NPQTLAPHPQASRRPRAGCSLSLQ 413

Query: 66  RSMERGYR-ARPGAQKSFPVPRRRPLAPLP---RSTLGTHASPGSGVGSRPSVP 115
              +RG R   P A       R  P  P P     TLG+H    + V  RP  P
Sbjct: 414 PPHQRGLRDGCPSA-----AGRLSPALPAPSPREVTLGSHVP--ARVSRRPCPP 460


>gi|113413437 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 324

 Score = 33.1 bits (74), Expect = 0.056
 Identities = 34/106 (32%), Positives = 41/106 (38%), Gaps = 14/106 (13%)

Query: 22  GRGAPAGFRSPGSAAAYDPRSAQGMGPARSGGRRQRR------GWVSGRCRSMERGYRAR 75
           G   P G    G      PR  +  GPAR   +++RR      G   G  R   RG  A 
Sbjct: 132 GDFGPKGIGMKGGGPGLPPRG-KASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAA 190

Query: 76  P----GAQKSFPVPRRRPLAPLPRSTLGTHASPGSGVGSRPSVPAS 117
                G + +   P RR   P PR  L    SP SG G  P+ P S
Sbjct: 191 AVGPTGPRPTGAPPSRRTPPPGPRRPL---RSPHSGSGWTPARPPS 233


>gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens]
          Length = 261

 Score = 33.1 bits (74), Expect = 0.056
 Identities = 32/98 (32%), Positives = 37/98 (37%), Gaps = 11/98 (11%)

Query: 28  GFRSPGSAAAYDPRSAQGMGPARSGGRRQRRGWVSGRCRSMERGYRARPGAQKSFPVPRR 87
           G R+PG      P + +G GP R      R     G   S+ R  RARPG +   P P  
Sbjct: 36  GPRTPGGQL---PGARRGPGPRRPAPLPARP---PGALGSVLRPLRARPGCRPRRPHPAA 89

Query: 88  RPLAPLPRSTLGTHASPGS-----GVGSRPSVPASGRS 120
           R L   P      H  PG      G       PA GRS
Sbjct: 90  RCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRS 127


>gi|29648305 zinc finger, CCHC domain containing 3 [Homo sapiens]
          Length = 403

 Score = 33.1 bits (74), Expect = 0.056
 Identities = 28/88 (31%), Positives = 35/88 (39%), Gaps = 15/88 (17%)

Query: 20  PHGRGAPAGFRSPGSAAAYDPRSAQGMGPARSGGRRQRRGWVSGRCRSMERGYRARPGAQ 79
           P GRG P G R   +  A DPR  +G   A   GRR++         +      ARPG  
Sbjct: 91  PAGRGDPKGRRRDPAGEAVDPRKKKG---AAEAGRRKK-----AEAAAAAMATPARPGEA 142

Query: 80  KSFPVPRRRPLAPLPRSTLGTHASPGSG 107
           +       RPL   P +  G    PG G
Sbjct: 143 ED---AAERPLQDEPAAAAG----PGKG 163


>gi|37537554 hypothetical protein FLJ37538 [Homo sapiens]
          Length = 841

 Score = 33.1 bits (74), Expect = 0.056
 Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 2/83 (2%)

Query: 43  AQGMGPARSGGRRQRRGWVSGRCRSMERGYRARPGAQKSFPVPRRRPLAP--LPRSTLGT 100
           A   GPA   G   R   ++   RS+  G+   P +Q+  P P R  +AP  L   ++G+
Sbjct: 31  AGSAGPAAGQGPGVRVRDIASLRRSLRMGFMTMPASQEHTPHPCRSAMAPRSLSCHSVGS 90

Query: 101 HASPGSGVGSRPSVPASGRSQRR 123
             S G G G          S RR
Sbjct: 91  MDSVGGGPGGASGGLTEDSSTRR 113


>gi|239756453 PREDICTED: hypothetical protein XP_002344992 [Homo
           sapiens]
          Length = 474

 Score = 32.7 bits (73), Expect = 0.073
 Identities = 34/87 (39%), Positives = 38/87 (43%), Gaps = 18/87 (20%)

Query: 20  PH-GRGAPAGFRSPGSAAAYDPRSAQGMGPARSGG------RRQRRGWVSGRCR-SMER- 70
           PH G GA    RSPG  +    R+  G+GP  + G      RRQRRG     CR S ER 
Sbjct: 392 PHLGHGAGLLGRSPGGKS----RNFSGLGPVLTDGSGALPLRRQRRGGSFNLCRCSSERR 447

Query: 71  ----GYRARPG-AQKSFPVPRRRPLAP 92
               G R  P     S P P  R  AP
Sbjct: 448 PRGPGRRRHPDPGTSSQPRPAPRERAP 474


>gi|239751471 PREDICTED: hypothetical protein XP_002347846 [Homo
           sapiens]
          Length = 870

 Score = 32.7 bits (73), Expect = 0.073
 Identities = 35/116 (30%), Positives = 48/116 (41%), Gaps = 9/116 (7%)

Query: 6   CGYGGARVWRSIDAPHGRGAPAGFRSPGSAAAYDPRSAQGMGPARSGGRRQRRGWVSGRC 65
           CG G      S+  P GRGA     +  +  A+  R   G GP    GRR+RRGW     
Sbjct: 691 CGPGPVPGGLSVPTPCGRGAGDFSEADLADRAFPVR---GAGPI--AGRRRRRGWTF--A 743

Query: 66  RSMERGY-RARPGAQKSFPVPRRRPLAPLPRSTLGTHASPGSGVGSRPSVPASGRS 120
            ++ +G  R +P A  +   P + P AP   +         + V  RP   A G S
Sbjct: 744 AALRKGAPREQPPASPA-ASPCQAPRAPEKETEAPRLRGRATAVAPRPLPAAPGFS 798


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.134    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,634,153
Number of Sequences: 37866
Number of extensions: 386034
Number of successful extensions: 2879
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 397
Number of HSP's that attempted gapping in prelim test: 2532
Number of HSP's gapped (non-prelim): 732
length of query: 124
length of database: 18,247,518
effective HSP length: 89
effective length of query: 35
effective length of database: 14,877,444
effective search space: 520710540
effective search space used: 520710540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.