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Search of human proteins with 239743803
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743803 PREDICTED: hypothetical protein XP_002342963 [Homo
sapiens]
(148 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239743803 PREDICTED: hypothetical protein XP_002342963 [Homo ... 314 2e-86
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 33 0.11
gi|171184400 ATP-binding cassette, sub-family B, member 10 [Homo... 32 0.15
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 32 0.19
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 32 0.19
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 32 0.19
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 32 0.19
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 32 0.19
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 32 0.19
gi|120953251 neuron navigator 3 [Homo sapiens] 32 0.19
gi|222144283 hypothetical protein LOC65998 [Homo sapiens] 32 0.25
gi|169214061 PREDICTED: hypothetical protein [Homo sapiens] 32 0.25
gi|169214437 PREDICTED: hypothetical protein [Homo sapiens] 32 0.25
gi|169213353 PREDICTED: hypothetical protein [Homo sapiens] 32 0.25
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 31 0.43
gi|169178458 PREDICTED: hemicentin 2 [Homo sapiens] 31 0.43
gi|239749684 PREDICTED: hemicentin 2 [Homo sapiens] 31 0.43
gi|169177000 PREDICTED: hemicentin 2 [Homo sapiens] 31 0.43
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 31 0.43
gi|222080060 Smith-Magenis syndrome chromosome region, candidate... 30 0.74
gi|65786661 BTB (POZ) domain containing 11 isoform a [Homo sapiens] 30 0.74
gi|239749048 PREDICTED: hypothetical protein XP_002346892 [Homo ... 30 0.96
gi|239743075 PREDICTED: hypothetical protein XP_002342752 [Homo ... 30 0.96
gi|239508721 PREDICTED: hypothetical protein [Homo sapiens] 30 0.96
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 30 0.96
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 30 0.96
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 30 0.96
gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens] 30 0.96
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 29 1.3
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 29 1.3
>gi|239743803 PREDICTED: hypothetical protein XP_002342963 [Homo
sapiens]
Length = 148
Score = 314 bits (804), Expect = 2e-86
Identities = 148/148 (100%), Positives = 148/148 (100%)
Query: 1 MCRGQTIKRLRMVDKCVWTFHSGLLKFLKSRKPAQGTEASGGAPQQQQGGATLVLSQAWP 60
MCRGQTIKRLRMVDKCVWTFHSGLLKFLKSRKPAQGTEASGGAPQQQQGGATLVLSQAWP
Sbjct: 1 MCRGQTIKRLRMVDKCVWTFHSGLLKFLKSRKPAQGTEASGGAPQQQQGGATLVLSQAWP 60
Query: 61 PETAGLSGRPAVLGCRGRQLPGGTGERLWGSWIRDPRPRGGDDAWSHAGLAGPGSWGSQA 120
PETAGLSGRPAVLGCRGRQLPGGTGERLWGSWIRDPRPRGGDDAWSHAGLAGPGSWGSQA
Sbjct: 61 PETAGLSGRPAVLGCRGRQLPGGTGERLWGSWIRDPRPRGGDDAWSHAGLAGPGSWGSQA 120
Query: 121 PLLASRPHHPERARLASDLLKLSRVGTG 148
PLLASRPHHPERARLASDLLKLSRVGTG
Sbjct: 121 PLLASRPHHPERARLASDLLKLSRVGTG 148
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 32.7 bits (73), Expect = 0.11
Identities = 27/68 (39%), Positives = 30/68 (44%), Gaps = 14/68 (20%)
Query: 60 PPETAGLSGRPAVLGCRGRQLPGGTGERLWGSWIRDPRPRG-----GDDAWSHAGLAGP- 113
PP G G P G G + G TGE + DP PRG GD + AGL GP
Sbjct: 564 PPGPPGSIGHPGARGPPGYR--GPTGE------LGDPGPRGNQGDRGDKGAAGAGLDGPE 615
Query: 114 GSWGSQAP 121
G G Q P
Sbjct: 616 GDQGPQGP 623
Score = 28.9 bits (63), Expect = 1.6
Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 8/62 (12%)
Query: 60 PPETAGLSGRPAVLGCRGRQLPGGTGERLWGSWIRDPRPRGGDDAWSHAGLAGPGSWGSQ 119
PP AG+SG P +G RG P G P P G H G+ G+ Q
Sbjct: 122 PPGEAGVSGPPGGIGLRGPPGPSGLPGL--------PGPPGPPGPPGHPGVLPEGATDLQ 173
Query: 120 AP 121
P
Sbjct: 174 CP 175
Score = 26.6 bits (57), Expect = 8.2
Identities = 27/71 (38%), Positives = 32/71 (45%), Gaps = 13/71 (18%)
Query: 61 PETAGLSGRPAVLGCRGRQLP----GGTGERLWGSWIRDPRP-----RGGDDAWSHAGLA 111
P AGL G P V G GR P G GER GS + P P +G AG++
Sbjct: 73 PGEAGLPGLPGVDGLTGRDGPPGPKGAPGER--GS-LGPPGPPGLGGKGLPGPPGEAGVS 129
Query: 112 G-PGSWGSQAP 121
G PG G + P
Sbjct: 130 GPPGGIGLRGP 140
>gi|171184400 ATP-binding cassette, sub-family B, member 10 [Homo
sapiens]
Length = 738
Score = 32.3 bits (72), Expect = 0.15
Identities = 21/67 (31%), Positives = 25/67 (37%), Gaps = 18/67 (26%)
Query: 79 QLPGGTGERLWGSWIRDPRPRGGDDAWSHAGLAGPGSWGSQAPLLASRPH--------HP 130
+ PGG W GD+AW A PG G P A P +P
Sbjct: 117 RFPGGPAAAAWA----------GDEAWRRGPAAPPGDKGRLRPAAAGLPEARKLLGLAYP 166
Query: 131 ERARLAS 137
ER RLA+
Sbjct: 167 ERRRLAA 173
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 32.0 bits (71), Expect = 0.19
Identities = 31/98 (31%), Positives = 39/98 (39%), Gaps = 6/98 (6%)
Query: 39 ASGGAPQQQQGGATLVLSQAWPPETAGLSGRPAVLGCRGRQLPGGTGERLWGSWIR-DPR 97
A G A + GAT P AG G P +G +G P G +R +P
Sbjct: 315 APGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPG 374
Query: 98 PRGGDDAWSHAGLAG----PGSWGSQ-APLLASRPHHP 130
P G A AG G PG+ G+ AP +A P P
Sbjct: 375 PPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFP 412
Score = 28.1 bits (61), Expect = 2.8
Identities = 26/79 (32%), Positives = 29/79 (36%), Gaps = 2/79 (2%)
Query: 58 AWPPETAGLSGRPAVLGCRGRQ-LPGGTGERLWGSWIRDPRPRGGDDAWSHAGLAG-PGS 115
A PP +G G P G GR PG G+R P G A G AG G
Sbjct: 1006 AGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGD 1065
Query: 116 WGSQAPLLASRPHHPERAR 134
G P + P P AR
Sbjct: 1066 RGETGPAGPAGPVGPVGAR 1084
Score = 26.9 bits (58), Expect = 6.2
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 58 AWPPETAGLSGRPAVLGCRGRQLPGGTGERLWGSWIRDPRPRGGDDAWSHAGLAGPGSWG 117
A PP G+ G+P + G G P G L G++ P+ G D S G++ PG G
Sbjct: 126 AGPPGRDGIPGQPGLPGPPGPPGPPGP-PGLGGNFA--PQLSYGYDEKSTGGISVPGPMG 182
Query: 118 SQAP 121
P
Sbjct: 183 PSGP 186
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 32.0 bits (71), Expect = 0.19
Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 9/80 (11%)
Query: 60 PPETAGLSGRPAVLGCRGRQ----LPGGTGERLWGSWIR-DPRPRGGDDAWSHAGLAG-- 112
PP G G P +G RG Q +PG GE+ +R P PRG A G G
Sbjct: 1138 PPGLPGFPGSPGPMGIRGDQGRDGIPGPAGEKGETGLLRAPPGPRGNPGAQGAKGDRGAP 1197
Query: 113 --PGSWGSQAPLLASRPHHP 130
PG G + + + P P
Sbjct: 1198 GFPGLPGRKGAMGDAGPRGP 1217
Score = 28.9 bits (63), Expect = 1.6
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 34 AQGTEASGGAPQ-QQQGGATLVLSQAWPPETAGLSGRPAVLGCRGRQLPGGTGER 87
AQG + GAP G + A P G+ G P G G +PG TG R
Sbjct: 1187 AQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPGLPGAIIPGQTGNR 1241
Score = 27.3 bits (59), Expect = 4.8
Identities = 25/65 (38%), Positives = 26/65 (40%), Gaps = 10/65 (15%)
Query: 65 GLSGRPAVLGCRGRQLPGGTGERLW----GSWIRDPRPRGGDDAWSHAGLAG----PGSW 116
G SG P V G G PG G W GS + R R G DA G G PG
Sbjct: 372 GPSGPPGVPGSPGSSRPGLRGAPGWPGLKGS--KGERGRPGKDAMGTPGSPGCAGSPGLP 429
Query: 117 GSQAP 121
GS P
Sbjct: 430 GSPGP 434
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 32.0 bits (71), Expect = 0.19
Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 9/80 (11%)
Query: 60 PPETAGLSGRPAVLGCRGRQ----LPGGTGERLWGSWIR-DPRPRGGDDAWSHAGLAG-- 112
PP G G P +G RG Q +PG GE+ +R P PRG A G G
Sbjct: 1138 PPGLPGFPGSPGPMGIRGDQGRDGIPGPAGEKGETGLLRAPPGPRGNPGAQGAKGDRGAP 1197
Query: 113 --PGSWGSQAPLLASRPHHP 130
PG G + + + P P
Sbjct: 1198 GFPGLPGRKGAMGDAGPRGP 1217
Score = 28.9 bits (63), Expect = 1.6
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 34 AQGTEASGGAPQ-QQQGGATLVLSQAWPPETAGLSGRPAVLGCRGRQLPGGTGER 87
AQG + GAP G + A P G+ G P G G +PG TG R
Sbjct: 1187 AQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPGLPGAIIPGQTGNR 1241
Score = 27.3 bits (59), Expect = 4.8
Identities = 25/65 (38%), Positives = 26/65 (40%), Gaps = 10/65 (15%)
Query: 65 GLSGRPAVLGCRGRQLPGGTGERLW----GSWIRDPRPRGGDDAWSHAGLAG----PGSW 116
G SG P V G G PG G W GS + R R G DA G G PG
Sbjct: 372 GPSGPPGVPGSPGSSRPGLRGAPGWPGLKGS--KGERGRPGKDAMGTPGSPGCAGSPGLP 429
Query: 117 GSQAP 121
GS P
Sbjct: 430 GSPGP 434
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 32.0 bits (71), Expect = 0.19
Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 9/80 (11%)
Query: 60 PPETAGLSGRPAVLGCRGRQ----LPGGTGERLWGSWIR-DPRPRGGDDAWSHAGLAG-- 112
PP G G P +G RG Q +PG GE+ +R P PRG A G G
Sbjct: 1138 PPGLPGFPGSPGPMGIRGDQGRDGIPGPAGEKGETGLLRAPPGPRGNPGAQGAKGDRGAP 1197
Query: 113 --PGSWGSQAPLLASRPHHP 130
PG G + + + P P
Sbjct: 1198 GFPGLPGRKGAMGDAGPRGP 1217
Score = 28.9 bits (63), Expect = 1.6
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 34 AQGTEASGGAPQ-QQQGGATLVLSQAWPPETAGLSGRPAVLGCRGRQLPGGTGER 87
AQG + GAP G + A P G+ G P G G +PG TG R
Sbjct: 1187 AQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPGLPGAIIPGQTGNR 1241
Score = 27.3 bits (59), Expect = 4.8
Identities = 25/65 (38%), Positives = 26/65 (40%), Gaps = 10/65 (15%)
Query: 65 GLSGRPAVLGCRGRQLPGGTGERLW----GSWIRDPRPRGGDDAWSHAGLAG----PGSW 116
G SG P V G G PG G W GS + R R G DA G G PG
Sbjct: 372 GPSGPPGVPGSPGSSRPGLRGAPGWPGLKGS--KGERGRPGKDAMGTPGSPGCAGSPGLP 429
Query: 117 GSQAP 121
GS P
Sbjct: 430 GSPGP 434
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 32.0 bits (71), Expect = 0.19
Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 9/80 (11%)
Query: 60 PPETAGLSGRPAVLGCRGRQ----LPGGTGERLWGSWIR-DPRPRGGDDAWSHAGLAG-- 112
PP G G P +G RG Q +PG GE+ +R P PRG A G G
Sbjct: 1138 PPGLPGFPGSPGPMGIRGDQGRDGIPGPAGEKGETGLLRAPPGPRGNPGAQGAKGDRGAP 1197
Query: 113 --PGSWGSQAPLLASRPHHP 130
PG G + + + P P
Sbjct: 1198 GFPGLPGRKGAMGDAGPRGP 1217
Score = 28.9 bits (63), Expect = 1.6
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 34 AQGTEASGGAPQ-QQQGGATLVLSQAWPPETAGLSGRPAVLGCRGRQLPGGTGER 87
AQG + GAP G + A P G+ G P G G +PG TG R
Sbjct: 1187 AQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPGLPGAIIPGQTGNR 1241
Score = 27.3 bits (59), Expect = 4.8
Identities = 25/65 (38%), Positives = 26/65 (40%), Gaps = 10/65 (15%)
Query: 65 GLSGRPAVLGCRGRQLPGGTGERLW----GSWIRDPRPRGGDDAWSHAGLAG----PGSW 116
G SG P V G G PG G W GS + R R G DA G G PG
Sbjct: 372 GPSGPPGVPGSPGSSRPGLRGAPGWPGLKGS--KGERGRPGKDAMGTPGSPGCAGSPGLP 429
Query: 117 GSQAP 121
GS P
Sbjct: 430 GSPGP 434
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 32.0 bits (71), Expect = 0.19
Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 9/69 (13%)
Query: 60 PPETAGLSGRPAVLGCRGRQLPGGT---GERLWGSWIRDPRPRGGDDAWSHAGLAGP--- 113
PP G GRP G RG LPG T G+R + P +G + H G GP
Sbjct: 522 PPGRVGKMGRPGADGARG--LPGDTGPKGDRGFDGLPGLPGEKGQRGDFGHVGQPGPPGE 579
Query: 114 -GSWGSQAP 121
G G++ P
Sbjct: 580 DGERGAEGP 588
Score = 28.9 bits (63), Expect = 1.6
Identities = 20/45 (44%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 45 QQQQGGATLV---LSQAWPPETAGLSGRPAVLGCRGRQLPGGTGE 86
QQ Q A L LS PP GL+GRP +G G PG GE
Sbjct: 462 QQAQAQAVLQQTQLSMKGPPGPVGLTGRPGPVGLPGH--PGLKGE 504
>gi|120953251 neuron navigator 3 [Homo sapiens]
Length = 2363
Score = 32.0 bits (71), Expect = 0.19
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
Query: 35 QGTEASGGAPQQQQGGATLVLSQAWPPET-AGLSGRPAVLGCRGRQLPGGTGERLWGSWI 93
+G A GGAP +Q+ G + + + + A G+ + G ++ P G+
Sbjct: 991 RGMSAQGGAPSRQKAGTSALKTPGKTDDAKASEKGKAPLKGSSLQRSPSDAGKSSGDEGK 1050
Query: 94 RDPRPRGGDDAWSHAGLAGPGSWGSQAPLLAS 125
+ P G A S G P GS A + +S
Sbjct: 1051 KPPSGIGRSTATSSFGFKKPSGVGSSAMITSS 1082
>gi|222144283 hypothetical protein LOC65998 [Homo sapiens]
Length = 678
Score = 31.6 bits (70), Expect = 0.25
Identities = 25/63 (39%), Positives = 28/63 (44%), Gaps = 11/63 (17%)
Query: 70 PAVLGCRGRQLP--GGTGERLWGSWIRDPRPRGGDDAWSHAGLAGPGSWGSQAPLLASRP 127
PAV RGR+LP G +G GG D G GSWGS APL +SR
Sbjct: 20 PAVASARGRRLPPAGSSGS------AEPEEDEGGQDLQLEGGAL--GSWGS-APLPSSRA 70
Query: 128 HHP 130
P
Sbjct: 71 RGP 73
>gi|169214061 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 31.6 bits (70), Expect = 0.25
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 17/89 (19%)
Query: 28 LKSRKPAQGTEASGGAPQQQQG-----GATLVLSQAWPPETAGLSGRPAVLGCRGRQ-LP 81
L + P + A+ APQ +Q G +L + P AG +G C R+ LP
Sbjct: 200 LPAGSPDPPSPAATAAPQPEQRPHLSRGQWRLLPRRRPERAAGSAG-----SCSSRRALP 254
Query: 82 G-GTGERLWGSWIRDPRPRGGDDAWSHAG 109
G+G + GSW PRP AW+ G
Sbjct: 255 ASGSGAAMTGSWAAPPRP-----AWAGLG 278
>gi|169214437 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 31.6 bits (70), Expect = 0.25
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 17/89 (19%)
Query: 28 LKSRKPAQGTEASGGAPQQQQG-----GATLVLSQAWPPETAGLSGRPAVLGCRGRQ-LP 81
L + P + A+ APQ +Q G +L + P AG +G C R+ LP
Sbjct: 200 LPAGSPDPPSPAATAAPQPEQRPHLSRGQWRLLPRRRPERAAGSAG-----SCSSRRALP 254
Query: 82 G-GTGERLWGSWIRDPRPRGGDDAWSHAG 109
G+G + GSW PRP AW+ G
Sbjct: 255 ASGSGAAMTGSWAAPPRP-----AWAGLG 278
>gi|169213353 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 31.6 bits (70), Expect = 0.25
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 17/89 (19%)
Query: 28 LKSRKPAQGTEASGGAPQQQQG-----GATLVLSQAWPPETAGLSGRPAVLGCRGRQ-LP 81
L + P + A+ APQ +Q G +L + P AG +G C R+ LP
Sbjct: 200 LPAGSPDPPSPAATAAPQPEQRPHLSRGQWRLLPRRRPERAAGSAG-----SCSSRRALP 254
Query: 82 G-GTGERLWGSWIRDPRPRGGDDAWSHAG 109
G+G + GSW PRP AW+ G
Sbjct: 255 ASGSGAAMTGSWAAPPRP-----AWAGLG 278
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 30.8 bits (68), Expect = 0.43
Identities = 34/101 (33%), Positives = 40/101 (39%), Gaps = 15/101 (14%)
Query: 30 SRKPAQGTEASGGAPQQQQGGATLVLSQAWPPETAGLSGRPAVLGCRGRQLPGGTGERLW 89
S+ P G G + Q+G LV P G+ GRP G G Q G GER
Sbjct: 97 SQTPGGGNTNFGRGRKGQKGEPGLV------PVVTGIRGRPGPAGPPGSQ--GPRGER-- 146
Query: 90 GSWIRDPRPRGGDDAWSHAGLAGPGSWGSQAPLLASRPHHP 130
G R P PRG G+ PG G+ P P HP
Sbjct: 147 GPKGR-PGPRGPQGIDGEPGV--PGQPGAPGP--PGHPSHP 182
>gi|169178458 PREDICTED: hemicentin 2 [Homo sapiens]
Length = 3874
Score = 30.8 bits (68), Expect = 0.43
Identities = 32/111 (28%), Positives = 40/111 (36%), Gaps = 14/111 (12%)
Query: 20 FHSGLLKFLKSRKPAQGTEASGGAPQQQQGGATLVLSQAWPPETAGLSGRPAV------- 72
F GL FL+ Q A G PQ Q +S A+ PE L + A
Sbjct: 3365 FQGGLPSFLRCNHSIQYNAARGPQPQLVQHLRASAISSAFDPEAEALRFQLATALQAEEN 3424
Query: 73 -LGCRGRQLPGGTGERLWGSWIRD-PRPRGGDDAWSHAGLAGPGSWGSQAP 121
+GC P G G++ D GG SHA L PG + P
Sbjct: 3425 EVGC-----PEGFELDSQGAFCVDRDECSGGPSPCSHACLNAPGRFSCTCP 3470
>gi|239749684 PREDICTED: hemicentin 2 [Homo sapiens]
Length = 5065
Score = 30.8 bits (68), Expect = 0.43
Identities = 32/111 (28%), Positives = 40/111 (36%), Gaps = 14/111 (12%)
Query: 20 FHSGLLKFLKSRKPAQGTEASGGAPQQQQGGATLVLSQAWPPETAGLSGRPAV------- 72
F GL FL+ Q A G PQ Q +S A+ PE L + A
Sbjct: 4556 FQGGLPSFLRCNHSIQYNAARGPQPQLVQHLRASAISSAFDPEAEALRFQLATALQAEEN 4615
Query: 73 -LGCRGRQLPGGTGERLWGSWIRD-PRPRGGDDAWSHAGLAGPGSWGSQAP 121
+GC P G G++ D GG SHA L PG + P
Sbjct: 4616 EVGC-----PEGFELDSQGAFCVDRDECSGGPSPCSHACLNAPGRFSCTCP 4661
>gi|169177000 PREDICTED: hemicentin 2 [Homo sapiens]
Length = 3783
Score = 30.8 bits (68), Expect = 0.43
Identities = 32/111 (28%), Positives = 40/111 (36%), Gaps = 14/111 (12%)
Query: 20 FHSGLLKFLKSRKPAQGTEASGGAPQQQQGGATLVLSQAWPPETAGLSGRPAV------- 72
F GL FL+ Q A G PQ Q +S A+ PE L + A
Sbjct: 3274 FQGGLPSFLRCNHSIQYNAARGPQPQLVQHLRASAISSAFDPEAEALRFQLATALQAEEN 3333
Query: 73 -LGCRGRQLPGGTGERLWGSWIRD-PRPRGGDDAWSHAGLAGPGSWGSQAP 121
+GC P G G++ D GG SHA L PG + P
Sbjct: 3334 EVGC-----PEGFELDSQGAFCVDRDECSGGPSPCSHACLNAPGRFSCTCP 3379
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 30.8 bits (68), Expect = 0.43
Identities = 26/80 (32%), Positives = 32/80 (40%), Gaps = 21/80 (26%)
Query: 44 PQQQQGGATLVLSQAWPPETAGLSGRPAVLGCRGRQLPGGTGERLWGSWIRDPRPRGGDD 103
P+ + GG S PP L +P++ G RG GG P P G
Sbjct: 1024 PEMETGG-----SPDDPPPRLALGPQPSLRGWRG----GG------------PSPTPGAP 1062
Query: 104 AWSHAGLAGPGSWGSQAPLL 123
+ SH G AG G SQ P L
Sbjct: 1063 SPSHHGSAGGGGGSSQGPAL 1082
>gi|222080060 Smith-Magenis syndrome chromosome region, candidate 7
isoform 3 [Homo sapiens]
Length = 205
Score = 30.0 bits (66), Expect = 0.74
Identities = 28/89 (31%), Positives = 36/89 (40%), Gaps = 8/89 (8%)
Query: 34 AQGTEASGGAPQQQQGGATLVLSQAWPPETAGLSGRPAVLGCRGRQLPGGT--GERLWGS 91
A + A G A + G S +TAG RP G Q+PG G R WG+
Sbjct: 97 APSSSAPGEAAGLRAGPCDHPSSPGGFGQTAGWRHRPGAAGLLSEQVPGTALWGIRAWGA 156
Query: 92 WIRDPRPRGGDDAWSHAGLAGPGSWGSQA 120
+R R GG A PG+ G+ A
Sbjct: 157 ALR--RAAGG----GCGPCASPGATGAGA 179
>gi|65786661 BTB (POZ) domain containing 11 isoform a [Homo sapiens]
Length = 1104
Score = 30.0 bits (66), Expect = 0.74
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 2 CRGQTIKRLRM-VDKCVWTFHSGLLKFLKSRKPAQGTEASGGAPQQQQGGATLVLSQA 58
C GQ RL +D+ WT L+SR P G GG P+ + ++S+A
Sbjct: 82 CAGQHCSRLLPDLDEVPWTLQELEALLLRSRDPRAGPAVPGGLPKDALAKLSTLVSRA 139
>gi|239749048 PREDICTED: hypothetical protein XP_002346892 [Homo
sapiens]
Length = 401
Score = 29.6 bits (65), Expect = 0.96
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Query: 94 RDPRPRGGDDAWSHAG----LAGPGSWGSQAPLLASRPHHPERARLASDL 139
R R R G W AG + GPG G+ +PL +R H P RL DL
Sbjct: 7 RRERERAG--GWRGAGGVRFVHGPGEAGAASPLTLARGHVPLVGRLQHDL 54
>gi|239743075 PREDICTED: hypothetical protein XP_002342752 [Homo
sapiens]
Length = 401
Score = 29.6 bits (65), Expect = 0.96
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Query: 94 RDPRPRGGDDAWSHAG----LAGPGSWGSQAPLLASRPHHPERARLASDL 139
R R R G W AG + GPG G+ +PL +R H P RL DL
Sbjct: 7 RRERERAG--GWRGAGGVRFVHGPGEAGAASPLTLARGHVPLVGRLQHDL 54
>gi|239508721 PREDICTED: hypothetical protein [Homo sapiens]
Length = 401
Score = 29.6 bits (65), Expect = 0.96
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Query: 94 RDPRPRGGDDAWSHAG----LAGPGSWGSQAPLLASRPHHPERARLASDL 139
R R R G W AG + GPG G+ +PL +R H P RL DL
Sbjct: 7 RRERERAG--GWRGAGGVRFVHGPGEAGAASPLTLARGHVPLVGRLQHDL 54
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 29.6 bits (65), Expect = 0.96
Identities = 25/101 (24%), Positives = 32/101 (31%), Gaps = 9/101 (8%)
Query: 28 LKSRKPAQGTEASGGAPQQQQGGATLVLSQAWPPETAGLSGRPAVLGCRGRQLPGGTGER 87
+K K +G G + GG S PP G G P + G +G + G G
Sbjct: 1323 MKGEKGDRGDAGQKGERGEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIRGQPG-- 1380
Query: 88 LWGSWIRDPRPRGGDDAWSHAGLAGPGSWGSQAPLLASRPH 128
P P+G PG G P PH
Sbjct: 1381 -------PPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPH 1414
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 29.6 bits (65), Expect = 0.96
Identities = 25/101 (24%), Positives = 32/101 (31%), Gaps = 9/101 (8%)
Query: 28 LKSRKPAQGTEASGGAPQQQQGGATLVLSQAWPPETAGLSGRPAVLGCRGRQLPGGTGER 87
+K K +G G + GG S PP G G P + G +G + G G
Sbjct: 908 MKGEKGDRGDAGQKGERGEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIRGQPG-- 965
Query: 88 LWGSWIRDPRPRGGDDAWSHAGLAGPGSWGSQAPLLASRPH 128
P P+G PG G P PH
Sbjct: 966 -------PPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPH 999
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 29.6 bits (65), Expect = 0.96
Identities = 25/101 (24%), Positives = 32/101 (31%), Gaps = 9/101 (8%)
Query: 28 LKSRKPAQGTEASGGAPQQQQGGATLVLSQAWPPETAGLSGRPAVLGCRGRQLPGGTGER 87
+K K +G G + GG S PP G G P + G +G + G G
Sbjct: 1088 MKGEKGDRGDAGQKGERGEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIRGQPG-- 1145
Query: 88 LWGSWIRDPRPRGGDDAWSHAGLAGPGSWGSQAPLLASRPH 128
P P+G PG G P PH
Sbjct: 1146 -------PPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPH 1179
>gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens]
Length = 1142
Score = 29.6 bits (65), Expect = 0.96
Identities = 24/61 (39%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 58 AWPPETAGLSGRPAVLGCRGRQLPGGTGERLWGSWIRDPRPRGGDDAWSHAGLAG-PGSW 116
A PP AG+SG+P G G +PG GER I P P G G G PG+
Sbjct: 880 AGPPGIAGMSGKPGAPGPPG--VPGEPGERGPVGDIGFPGPEGPSGKPGINGKDGIPGAQ 937
Query: 117 G 117
G
Sbjct: 938 G 938
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 29.3 bits (64), Expect = 1.3
Identities = 28/88 (31%), Positives = 34/88 (38%), Gaps = 14/88 (15%)
Query: 36 GTEASGGAPQQQQGGATLVLSQA-----WPPETAGLSGRPAVLGCRGRQLPGGTGERLWG 90
G + G Q+ A +L QA PP GL+GRP +G G G GE
Sbjct: 513 GDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSS--GAKGES--- 567
Query: 91 SWIRDPRPRGGDDAWSHAGLAG-PGSWG 117
DP P+G G G PG G
Sbjct: 568 ---GDPGPQGPRGVQGPPGPTGKPGKRG 592
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 29.3 bits (64), Expect = 1.3
Identities = 28/88 (31%), Positives = 34/88 (38%), Gaps = 14/88 (15%)
Query: 36 GTEASGGAPQQQQGGATLVLSQA-----WPPETAGLSGRPAVLGCRGRQLPGGTGERLWG 90
G + G Q+ A +L QA PP GL+GRP +G G G GE
Sbjct: 462 GDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSS--GAKGES--- 516
Query: 91 SWIRDPRPRGGDDAWSHAGLAG-PGSWG 117
DP P+G G G PG G
Sbjct: 517 ---GDPGPQGPRGVQGPPGPTGKPGKRG 541
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.136 0.449
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,589,320
Number of Sequences: 37866
Number of extensions: 449567
Number of successful extensions: 1667
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 85
Number of HSP's that attempted gapping in prelim test: 1509
Number of HSP's gapped (non-prelim): 253
length of query: 148
length of database: 18,247,518
effective HSP length: 93
effective length of query: 55
effective length of database: 14,725,980
effective search space: 809928900
effective search space used: 809928900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.