Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100128398 Sequence: fasta or formatted (384aa) NCBI GI: 169213353
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {384aa} PREDICTED: hypothetical protein
alt mRNA {384aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.7         41           2
 C cysteine            3.1         12           2
 D aspartate           1.3          5           1
 E glutamate           3.6         14           1
 F phenylalanine       1.0          4           1
 G glycine             8.6         33           3
 H histidine           2.9         11           2
 I isoleucine          1.8          7           2
 K lysine              2.9         11           2
 L leucine             9.9         38           2
 M methionine          1.0          4           1
 N asparagine          1.6          6           1
 P proline            11.5         44           2
 Q glutamine           3.9         15           2
 R arginine           14.6         56           3
 S serine              9.1         35           3
 T threonine           5.7         22           1
 V valine              3.1         12           1
 W tryptophan          2.9         11           1
 Y tyrosine            0.8          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128398          1.000   PREDICTED: hypothetical protein 
LOC100128398          1.000   PREDICTED: hypothetical protein 
LOC283999             0.032   hypothetical protein LOC283999 
SPTBN4                0.031   spectrin, beta, non-erythrocytic 4 isoform sigma1 [...
CACNA1A               0.028   calcium channel, alpha 1A subunit isoform 4 
LOC731282             0.026   PREDICTED: hypothetical protein 
LOC731282             0.026   PREDICTED: hypothetical protein 
LOC100292397          0.024   PREDICTED: hypothetical protein 
LOC100292133          0.024   PREDICTED: hypothetical protein 
LOC100294354          0.024   PREDICTED: hypothetical protein 
ATOH8                 0.023   atonal homolog 8 
LOC731282             0.023   PREDICTED: hypothetical protein 
ATXN2                 0.023   ataxin 2 
PLCH2                 0.022   phospholipase C, eta 2 
KDM6B                 0.021   lysine (K)-specific demethylase 6B 
LOC100291634          0.019   PREDICTED: hypothetical protein XP_002346062 
LOC100287232          0.019   PREDICTED: hypothetical protein XP_002342816 
LOC100287232          0.019   PREDICTED: hypothetical protein 
ZBTB4                 0.019   zinc finger and BTB domain containing 4 
ZBTB4                 0.019   zinc finger and BTB domain containing 4 
GPR153                0.019   G protein-coupled receptor 153 
LOC100290023          0.019   PREDICTED: hypothetical protein XP_002348147 
LOC646396             0.019   PREDICTED: similar to hCG2042704 
SYNPO                 0.019   synaptopodin isoform A 
TOMM40                0.019   translocase of outer mitochondrial membrane 40 [Hom...
TOMM40                0.019   translocase of outer mitochondrial membrane 40 [Hom...
TOMM40                0.019   translocase of outer mitochondrial membrane 40 
LOC729570             0.019   PREDICTED: hypothetical protein 
LOC100290372          0.019   PREDICTED: hypothetical protein XP_002346788 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press