Guide to the Human Genome
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Name: LOC100291455 Sequence: fasta or formatted (401aa) NCBI GI: 239749048
Description:

PREDICTED: hypothetical protein XP_002346892

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            17.0         68           3
 C cysteine            1.2          5           1
 D aspartate           3.5         14           1
 E glutamate           4.0         16           2
 F phenylalanine       1.7          7           3
 G glycine            12.0         48           3
 H histidine           4.5         18           1
 I isoleucine          0.5          2           1
 K lysine              0.5          2           1
 L leucine            11.7         47           2
 M methionine          0.7          3           1
 N asparagine          0.7          3           1
 P proline             9.2         37           2
 Q glutamine           3.5         14           1
 R arginine           12.0         48           3
 S serine              2.2          9           1
 T threonine           2.7         11           1
 V valine             11.0         44           3
 W tryptophan          0.7          3           1
 Y tyrosine            0.5          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346892 
LOC100288744          1.000   PREDICTED: hypothetical protein XP_002342752 
LOC100288744          1.000   PREDICTED: hypothetical protein 
CABLES2               0.019   Cdk5 and Abl enzyme substrate 2 
LOC100133655          0.019   PREDICTED: hypothetical protein 
PCLO                  0.019   piccolo isoform 2 
PCLO                  0.019   piccolo isoform 1 
SYNJ1                 0.018   synaptojanin 1 isoform d 
DMRTA2                0.018   DMRT-like family A2 
HOXA4                 0.018   homeobox A4 
C10orf47              0.015   hypothetical protein LOC254427 
LOC100133479          0.015   PREDICTED: hypothetical protein 
LOC100133479          0.015   PREDICTED: hypothetical protein 
GGN                   0.015   gametogenetin 
SOS2                  0.015   son of sevenless homolog 2 
UNCX                  0.015   UNC homeobox 
IER5L                 0.015   immediate early response 5-like 
LOC100130667          0.014   PREDICTED: hypothetical protein 
LOC100130667          0.014   PREDICTED: hypothetical protein 
LOC100130667          0.014   PREDICTED: hypothetical protein 
WAS                   0.014   Wiskott-Aldrich syndrome protein 
LOC100289737          0.014   PREDICTED: hypothetical protein XP_002347183 
LOC100288678          0.014   PREDICTED: hypothetical protein XP_002343039 
MAP6                  0.014   microtubule-associated protein 6 isoform 2 
MAP6                  0.014   microtubule-associated protein 6 isoform 1 
DMWD                  0.014   dystrophia myotonica-containing WD repeat motif prot...
LOC646509             0.013   PREDICTED: hypothetical protein 
SALL3                 0.013   sal-like 3 
LOC100292727          0.013   PREDICTED: hypothetical protein 
LOC100131102          0.013   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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