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Search of human proteins with 239743688
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743688 PREDICTED: hypothetical protein XP_002342946 [Homo
sapiens]
(400 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239749538 PREDICTED: hypothetical protein XP_002347080 [Homo ... 820 0.0
gi|239743688 PREDICTED: hypothetical protein XP_002342946 [Homo ... 820 0.0
gi|239755029 PREDICTED: hypothetical protein [Homo sapiens] 312 3e-85
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 62 1e-09
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 56 7e-08
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 55 1e-07
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 54 2e-07
gi|169213235 PREDICTED: hypothetical protein [Homo sapiens] 53 6e-07
gi|169212744 PREDICTED: hypothetical protein [Homo sapiens] 53 6e-07
gi|110832843 TBP-associated factor 4 [Homo sapiens] 52 7e-07
gi|169206171 PREDICTED: hypothetical protein [Homo sapiens] 52 1e-06
gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo ... 51 2e-06
gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo ... 50 3e-06
gi|61966741 TMF regulated nuclear protein [Homo sapiens] 50 3e-06
gi|169206489 PREDICTED: hypothetical protein [Homo sapiens] 50 4e-06
gi|169205942 PREDICTED: hypothetical protein [Homo sapiens] 50 4e-06
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 50 5e-06
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 50 5e-06
gi|188536004 zinc finger protein 469 [Homo sapiens] 49 6e-06
gi|169207312 PREDICTED: hypothetical protein [Homo sapiens] 49 1e-05
gi|239750650 PREDICTED: hypothetical protein [Homo sapiens] 49 1e-05
gi|89037350 PREDICTED: hypothetical protein [Homo sapiens] 49 1e-05
gi|122937321 UNC homeobox [Homo sapiens] 49 1e-05
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 48 1e-05
gi|239750121 PREDICTED: hypothetical protein XP_002347280 [Homo ... 48 2e-05
gi|239741896 PREDICTED: hypothetical protein XP_002342335 [Homo ... 48 2e-05
gi|239741753 PREDICTED: hypothetical protein [Homo sapiens] 47 2e-05
gi|120587019 zinc finger protein 318 [Homo sapiens] 47 2e-05
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 47 3e-05
gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens] 47 4e-05
>gi|239749538 PREDICTED: hypothetical protein XP_002347080 [Homo
sapiens]
Length = 400
Score = 820 bits (2118), Expect = 0.0
Identities = 400/400 (100%), Positives = 400/400 (100%)
Query: 1 MVHWSQGVSGRASARVSLEPSTHAWEFQIPSLGRNLHVSPGTVLSDLQPLGITFPVFENS 60
MVHWSQGVSGRASARVSLEPSTHAWEFQIPSLGRNLHVSPGTVLSDLQPLGITFPVFENS
Sbjct: 1 MVHWSQGVSGRASARVSLEPSTHAWEFQIPSLGRNLHVSPGTVLSDLQPLGITFPVFENS 60
Query: 61 ERSSRHLPQAKAINPHHTASLSPAGRGAQRPPERFLPSSVSAGSAARTLRRGSEARKAQT 120
ERSSRHLPQAKAINPHHTASLSPAGRGAQRPPERFLPSSVSAGSAARTLRRGSEARKAQT
Sbjct: 61 ERSSRHLPQAKAINPHHTASLSPAGRGAQRPPERFLPSSVSAGSAARTLRRGSEARKAQT 120
Query: 121 PRPAGVAQGSGGGGERWLQGLGPPRGRGLSTAPPPSSLRLLPPTPRPFPPAPAGGKGEGG 180
PRPAGVAQGSGGGGERWLQGLGPPRGRGLSTAPPPSSLRLLPPTPRPFPPAPAGGKGEGG
Sbjct: 121 PRPAGVAQGSGGGGERWLQGLGPPRGRGLSTAPPPSSLRLLPPTPRPFPPAPAGGKGEGG 180
Query: 181 GKESAVLWKGAEGGGEKGNRNMAAAPLGDPAREAAQAQTGLRRRRPLELVPRPALPSAPS 240
GKESAVLWKGAEGGGEKGNRNMAAAPLGDPAREAAQAQTGLRRRRPLELVPRPALPSAPS
Sbjct: 181 GKESAVLWKGAEGGGEKGNRNMAAAPLGDPAREAAQAQTGLRRRRPLELVPRPALPSAPS 240
Query: 241 PRIRCFLAPGRSRVGAALTEEQAAGEAAARGLWRRKPAPCPRGACAARLGGRGTGRARRA 300
PRIRCFLAPGRSRVGAALTEEQAAGEAAARGLWRRKPAPCPRGACAARLGGRGTGRARRA
Sbjct: 241 PRIRCFLAPGRSRVGAALTEEQAAGEAAARGLWRRKPAPCPRGACAARLGGRGTGRARRA 300
Query: 301 EFRVAGPRGVAEEAESGRGWRSWPSFSAVSGGGESPDPAGCSRGKAAPEEPPRVARRAHE 360
EFRVAGPRGVAEEAESGRGWRSWPSFSAVSGGGESPDPAGCSRGKAAPEEPPRVARRAHE
Sbjct: 301 EFRVAGPRGVAEEAESGRGWRSWPSFSAVSGGGESPDPAGCSRGKAAPEEPPRVARRAHE 360
Query: 361 NRLRTSARGLGPGDRRGDGRFGGGRGAEGAGSGLPRGGRG 400
NRLRTSARGLGPGDRRGDGRFGGGRGAEGAGSGLPRGGRG
Sbjct: 361 NRLRTSARGLGPGDRRGDGRFGGGRGAEGAGSGLPRGGRG 400
>gi|239743688 PREDICTED: hypothetical protein XP_002342946 [Homo
sapiens]
Length = 400
Score = 820 bits (2118), Expect = 0.0
Identities = 400/400 (100%), Positives = 400/400 (100%)
Query: 1 MVHWSQGVSGRASARVSLEPSTHAWEFQIPSLGRNLHVSPGTVLSDLQPLGITFPVFENS 60
MVHWSQGVSGRASARVSLEPSTHAWEFQIPSLGRNLHVSPGTVLSDLQPLGITFPVFENS
Sbjct: 1 MVHWSQGVSGRASARVSLEPSTHAWEFQIPSLGRNLHVSPGTVLSDLQPLGITFPVFENS 60
Query: 61 ERSSRHLPQAKAINPHHTASLSPAGRGAQRPPERFLPSSVSAGSAARTLRRGSEARKAQT 120
ERSSRHLPQAKAINPHHTASLSPAGRGAQRPPERFLPSSVSAGSAARTLRRGSEARKAQT
Sbjct: 61 ERSSRHLPQAKAINPHHTASLSPAGRGAQRPPERFLPSSVSAGSAARTLRRGSEARKAQT 120
Query: 121 PRPAGVAQGSGGGGERWLQGLGPPRGRGLSTAPPPSSLRLLPPTPRPFPPAPAGGKGEGG 180
PRPAGVAQGSGGGGERWLQGLGPPRGRGLSTAPPPSSLRLLPPTPRPFPPAPAGGKGEGG
Sbjct: 121 PRPAGVAQGSGGGGERWLQGLGPPRGRGLSTAPPPSSLRLLPPTPRPFPPAPAGGKGEGG 180
Query: 181 GKESAVLWKGAEGGGEKGNRNMAAAPLGDPAREAAQAQTGLRRRRPLELVPRPALPSAPS 240
GKESAVLWKGAEGGGEKGNRNMAAAPLGDPAREAAQAQTGLRRRRPLELVPRPALPSAPS
Sbjct: 181 GKESAVLWKGAEGGGEKGNRNMAAAPLGDPAREAAQAQTGLRRRRPLELVPRPALPSAPS 240
Query: 241 PRIRCFLAPGRSRVGAALTEEQAAGEAAARGLWRRKPAPCPRGACAARLGGRGTGRARRA 300
PRIRCFLAPGRSRVGAALTEEQAAGEAAARGLWRRKPAPCPRGACAARLGGRGTGRARRA
Sbjct: 241 PRIRCFLAPGRSRVGAALTEEQAAGEAAARGLWRRKPAPCPRGACAARLGGRGTGRARRA 300
Query: 301 EFRVAGPRGVAEEAESGRGWRSWPSFSAVSGGGESPDPAGCSRGKAAPEEPPRVARRAHE 360
EFRVAGPRGVAEEAESGRGWRSWPSFSAVSGGGESPDPAGCSRGKAAPEEPPRVARRAHE
Sbjct: 301 EFRVAGPRGVAEEAESGRGWRSWPSFSAVSGGGESPDPAGCSRGKAAPEEPPRVARRAHE 360
Query: 361 NRLRTSARGLGPGDRRGDGRFGGGRGAEGAGSGLPRGGRG 400
NRLRTSARGLGPGDRRGDGRFGGGRGAEGAGSGLPRGGRG
Sbjct: 361 NRLRTSARGLGPGDRRGDGRFGGGRGAEGAGSGLPRGGRG 400
>gi|239755029 PREDICTED: hypothetical protein [Homo sapiens]
Length = 183
Score = 312 bits (800), Expect = 3e-85
Identities = 153/153 (100%), Positives = 153/153 (100%)
Query: 1 MVHWSQGVSGRASARVSLEPSTHAWEFQIPSLGRNLHVSPGTVLSDLQPLGITFPVFENS 60
MVHWSQGVSGRASARVSLEPSTHAWEFQIPSLGRNLHVSPGTVLSDLQPLGITFPVFENS
Sbjct: 1 MVHWSQGVSGRASARVSLEPSTHAWEFQIPSLGRNLHVSPGTVLSDLQPLGITFPVFENS 60
Query: 61 ERSSRHLPQAKAINPHHTASLSPAGRGAQRPPERFLPSSVSAGSAARTLRRGSEARKAQT 120
ERSSRHLPQAKAINPHHTASLSPAGRGAQRPPERFLPSSVSAGSAARTLRRGSEARKAQT
Sbjct: 61 ERSSRHLPQAKAINPHHTASLSPAGRGAQRPPERFLPSSVSAGSAARTLRRGSEARKAQT 120
Query: 121 PRPAGVAQGSGGGGERWLQGLGPPRGRGLSTAP 153
PRPAGVAQGSGGGGERWLQGLGPPRGRGLSTAP
Sbjct: 121 PRPAGVAQGSGGGGERWLQGLGPPRGRGLSTAP 153
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 61.6 bits (148), Expect = 1e-09
Identities = 107/378 (28%), Positives = 128/378 (33%), Gaps = 70/378 (18%)
Query: 83 PAGRGAQRPPERFLPSSVSAGSAARTLRRGSEARKAQTPRPAGVAQGSGGGGERWLQGLG 142
P RG Q PP P + G+ +G +A P G G GER GL
Sbjct: 682 PGERGVQGPPGPAGPRGAN-GAPGNDGAKG-DAGAPGAPGSQGAPGLQGMPGERGAAGLP 739
Query: 143 PPRG-------RGLSTAPPPSSLR-LLPPTPRPFPPAPAGGKGEGG--GKESAVLWKGAE 192
P+G +G +P +R L P P P G KGE G G +GA
Sbjct: 740 GPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAP 799
Query: 193 GG-GEKGNRNMA--AAPLGDPAREAAQAQTGLRRRRPLELVPRPALPSAPSPRIRCFLAP 249
G GE G A A P G + A+ + G + P PA P+ P I AP
Sbjct: 800 GDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAP 859
Query: 250 GRSRVGAALTEEQAAGEAAARGLWRRKPAPCPRGAC--------AARLGGRG----TGRA 297
G + A G A G R P P G A + GG+G TG A
Sbjct: 860 GAKGARGSAGPPGATGFPGAAG---RVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPA 916
Query: 298 RR-AEFRVAGPRGVAEEAESG-----------------------------RGWRSWPSFS 327
R E GP G A E S RG R +P
Sbjct: 917 GRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLP 976
Query: 328 AVSG--GGESPDPAGCSRGKAAPEEPPRVARRAHENRLRTSARGLGPGDRRGDGRFG--G 383
SG G + P A RG P PP +A E S R PG GR G G
Sbjct: 977 GPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGE-----SGREGAPGAEGSPGRDGSPG 1031
Query: 384 GRGAEG-AGSGLPRGGRG 400
+G G G P G G
Sbjct: 1032 AKGDRGETGPAGPPGAPG 1049
Score = 58.9 bits (141), Expect = 8e-09
Identities = 89/343 (25%), Positives = 116/343 (33%), Gaps = 45/343 (13%)
Query: 68 PQAKAINPHHTASLSPAGRGAQRPPERFLPSSVSAGSAARTLRRGSEARKAQT-----PR 122
P AK N + +P GA+ P P G + G+ K T P
Sbjct: 394 PGAKGANGAPGIAGAPGFPGARGPSGPQGPGG-PPGPKGNSGEPGAPGSKGDTGAKGEPG 452
Query: 123 PAGVAQGSGGGGERWLQGLGPPRGRGLSTAPPPSSLRLLPPTPRPFPPAPAGGKGEGG-- 180
P GV G GE +G G PT P PP GG G G
Sbjct: 453 PVGVQGPPGPAGEEGKRGARGEPG----------------PTGLPGPPGERGGPGSRGFP 496
Query: 181 GKESAVLWKGAEGGGEKGNRNMAAAPLGDPAREAAQAQTGLRRRRPLELVPRPALPSAPS 240
G + KG GE+G+ A P G P + GL + L P +P
Sbjct: 497 GADGVAGPKGP--AGERGSPG-PAGPKGSPGEAGRPGEAGLPGAKGLT-----GSPGSPG 548
Query: 241 PRIRCFLAPGRSRVGAALTEEQAAGEAAARGLWRRKPAPCPRGACA--ARLGGRGTGRAR 298
P + + G G ARG P P+GA + G RG
Sbjct: 549 PDGKTGPPGPAGQDG----RPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPP 604
Query: 299 RAEFRVAGPRGVAEEAESGRGWRSWPSFSAVSGGGESPDPAGCSRGKAAPEEPPRVARRA 358
A GP G ++ E+G P+ A G + P + +G P PP A +
Sbjct: 605 GA----VGPAG--KDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKP 658
Query: 359 HENRLRTSARGLGPGDRRGDGRFGGGRGAEG-AGSGLPRGGRG 400
E + GP RG+ F G RG +G G PRG G
Sbjct: 659 GEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANG 701
Score = 45.8 bits (107), Expect = 7e-05
Identities = 90/322 (27%), Positives = 112/322 (34%), Gaps = 65/322 (20%)
Query: 91 PPERFLPSSVSAGSAARTLRRGSEARK--AQTPRPAGVAQGSGGGGERWLQGLGPPRG-R 147
P ER P + A RG++ A P P G A G G +G P+G R
Sbjct: 307 PGERGRPGAPGPAGA-----RGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPR 361
Query: 148 GLSTAPPPSSLRLLPPTPRPFPPAPAGGKGEGGGKESAVLWKGAEGGGEKGNRNMAAAPL 207
G + P +R P PP PAG G G GA+G N A
Sbjct: 362 G---SEGPQGVR-----GEPGPPGPAGAAGPAGN-------PGADGQPGAKGANGAPGIA 406
Query: 208 GDPAREAAQAQTGLRRRRPLELVPRPALPSAPSPRIRCFLAPGRSRVGAALTEEQAAGEA 267
G P A+ +G P P P PG + G+
Sbjct: 407 GAPGFPGARGPSG------------PQGPGGP---------PGPKGNSGEPGAPGSKGDT 445
Query: 268 AARGLWRRKPAPC----PRGACAARLGGRGTGRARRAEFRVAGPRGVAEEAESGRGWRSW 323
A+G +P P P G A G RG R + GP G G G R +
Sbjct: 446 GAKG----EPGPVGVQGPPGP-AGEEGKRG-ARGEPGPTGLPGPPG----ERGGPGSRGF 495
Query: 324 PSFSAVSGGGESPDPAGCSRGKAAPEEPPRVARRAHENRLRTSARGL--GPGDRRGDGRF 381
P V+ G + P S G A P+ P A R E L A+GL PG DG+
Sbjct: 496 PGADGVA-GPKGPAGERGSPGPAGPKGSPGEAGRPGEAGL-PGAKGLTGSPGSPGPDGKT 553
Query: 382 G--GGRGAEG-AGSGLPRGGRG 400
G G G +G G P G RG
Sbjct: 554 GPPGPAGQDGRPGPPGPPGARG 575
Score = 41.2 bits (95), Expect = 0.002
Identities = 94/350 (26%), Positives = 115/350 (32%), Gaps = 54/350 (15%)
Query: 69 QAKAINPHHTASLSPAGRGAQ--RPPERFLPSSVSAG--SAARTLRRGSEARKAQ-TPRP 123
Q A +P PAG + +P E+ +P + A S AR R R Q P P
Sbjct: 634 QGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGP 693
Query: 124 AGVAQGSGGGGERWLQG-LGPPRGRGLSTAPPPSSLRLLPPTPRPFP--PAPAGGKGEGG 180
AG +G G +G G P G AP + P R P P G +G+ G
Sbjct: 694 AGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGM----PGERGAAGLPGPKGDRGDAG 749
Query: 181 GKESAVLWKGAEGGGEKGNRNMAAAPLGDPAREAAQAQTGLRRRRPLELVPRPALPSAPS 240
K GA+G K P+G P A G + PS P+
Sbjct: 750 PK-------GADGSPGKDGVRGLTGPIGPPGPAGAPGDKG------------ESGPSGPA 790
Query: 241 PRIRCFLAPGRSRVGAALTEEQAAGEAAARGLWRRKPAPCPRGA--CAARLGGRGTGRAR 298
APG AG A G K P GA A G G
Sbjct: 791 GPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGP---- 846
Query: 299 RAEFRVAGPRGV-----AEEAESGRGWRSWPSFSAVSGGGESPDPAGCSRGKAAPEEPPR 353
AGP G A A+ RG P + G P G S G A P PP
Sbjct: 847 ------AGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPS-GNAGPPGPPG 899
Query: 354 VARRAHENRLRTSARGLG-PGDRRGDGRFG--GGRGAEGAGSGLPRGGRG 400
A + R G PG+ G G G +G+ GA P G G
Sbjct: 900 PAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADG--PAGAPG 947
Score = 37.7 bits (86), Expect = 0.019
Identities = 81/317 (25%), Positives = 103/317 (32%), Gaps = 49/317 (15%)
Query: 98 SSVSAGSAARTLRRGSEARKAQTPRPAGVAQGSGGGGERWLQG-LGPPRGRGLSTAPPPS 156
+ V G GSE+ Q GV G G R +G GPP G+ P
Sbjct: 84 AEVPEGECCPVCPDGSESPTDQ--ETTGVEGPKGDTGPRGPRGPAGPPGRDGIPGQPGL- 140
Query: 157 SLRLLPPTPRPFPPAPAGGKGEGGGKESAVLW---KGAEGG-------GEKGNRNMAAAP 206
P P P PP P G G GG + + + + GG G G R + P
Sbjct: 141 ------PGP-PGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPP 193
Query: 207 LGDPAREAAQAQTGLRRRRPLELVPRPALPSAPSPRIRCFLAPGRSRVGAALTEEQAAGE 266
G P + Q G P P A P G + GE
Sbjct: 194 -GAPGPQGFQGPPG-----------EPGEPGASGPM-------GPRGPPGPPGKNGDDGE 234
Query: 267 AAARGLWRRKPAPCPRGACA-ARLGGRGTGRARRAEFRVAGPRGVAEEAESGRGWRSWPS 325
A G + P P+GA G + R + G +G A A G + P
Sbjct: 235 AGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPA----GPKGEPG 290
Query: 326 FSAVSGGGESPDPAGCSRGKAAPEEPPRVARRAHENRLRTSARG-LGPGDRRGDGRFGGG 384
+G P G + P P R ++ T A G GP G F G
Sbjct: 291 SPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDG--ATGAAGPPGPTGPAGPPGFPGA 348
Query: 385 RGAEG-AGSGLPRGGRG 400
GA+G AG PRG G
Sbjct: 349 VGAKGEAGPQGPRGSEG 365
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 55.8 bits (133), Expect = 7e-08
Identities = 86/351 (24%), Positives = 124/351 (35%), Gaps = 66/351 (18%)
Query: 58 ENSERSSRHL-----PQA--KAINPHHTASLSPAGRGAQRPPERFLPSSVSAGSAARTLR 110
E S RSS H P A KA + + SP R P R SS S+ L
Sbjct: 1373 EQSTRSSGHSSSELSPDAVEKAGMSSNQSISSPVLDAVPRTPSRERSSSASSPEMKDGLP 1432
Query: 111 RGSEARKAQTPRPAGVAQGSGGGGERWLQGLGP-----PR--GRGLSTAPPPSSLRLLPP 163
R + +R++++ G+ GSG L G P PR RG S + LP
Sbjct: 1433 R-TPSRRSRSGSSPGLRDGSGTPSRHSLSGSSPGMKDIPRTPSRGRSECDSSPEPKALPQ 1491
Query: 164 TPRPFPPAPAGGK---------GEGGGKESAVLWKGA------EGGGEKGNRNMAAAPLG 208
TPRP +P+ + E G ES+V K + ++ + P
Sbjct: 1492 TPRPRSRSPSSPELNNKCLTPQRERSGSESSVDQKTVARTPLGQRSRSGSSQELDVKPSA 1551
Query: 209 DPA-REAAQAQTGLRRRRPLELVPRPALPSAPSPRIRCFLAPGRSRVGAALTEEQAAGEA 267
P R + + + + L R S+P + L+P RSR G++ +
Sbjct: 1552 SPQERSESDSSPDSKAKTRTPLRQRSRSGSSPEVDSKSRLSPRRSRSGSSPEVKD----- 1606
Query: 268 AARGLWRRKPAPCPRGACAARLGGRGTGRARRAEFRVAGPRGVAEEAESGRGWRSWPSFS 327
KP PR +G E + PR + + SG
Sbjct: 1607 --------KPRAAPRAQ---------SGSDSSPEPKAPAPRALPRRSRSGS--------- 1640
Query: 328 AVSGGGESPDPAGCSRGKAAPEEPP--RVARRAHENRLRTSARGLGPGDRR 376
S G P P G S +++PE PP R ARR + + P RR
Sbjct: 1641 --SSKGRGPSPEGSSSTESSPEHPPKSRTARRGSRSSPEPKTKSRTPPRRR 1689
Score = 33.5 bits (75), Expect = 0.35
Identities = 37/137 (27%), Positives = 50/137 (36%), Gaps = 5/137 (3%)
Query: 250 GRSRVGAALTEEQAAGEAAARGLWRRKPAPCPRGACAARLGGRGTGRARRAEFRVAGPRG 309
GRSR A ++ + R +P R + +A+ GR RR R G
Sbjct: 482 GRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRSPQRPG 541
Query: 310 VAEEAESGRGWRSWPSFSAVSGGGESPDPAGCSRGKAAPEEPPRVARRAHENRLRTSARG 369
+ + R RS SA G S PA +RG++ P R R R +R
Sbjct: 542 WSRSRNTQRRGRSR---SARRGRSHSRSPA--TRGRSRSRTPARRGRSRSRTPARRRSRS 596
Query: 370 LGPGDRRGDGRFGGGRG 386
P RR R RG
Sbjct: 597 RTPTRRRSRSRTPARRG 613
Score = 33.5 bits (75), Expect = 0.35
Identities = 73/313 (23%), Positives = 104/313 (33%), Gaps = 54/313 (17%)
Query: 78 TASLSPAGRGAQRPPERFLPSSVSAGSAARTLRRGSEARKAQTPRPAGVAQGSGGGGERW 137
T + +P G+ ++ + L SA R+ S KA+T P SG E
Sbjct: 1527 TVARTPLGQRSRSGSSQELDVKPSASPQERSESDSSPDSKAKTRTPLRQRSRSGSSPEVD 1586
Query: 138 LQG-LGPPRGRGLSTAPPPSSLRLLP-------PTPRPFPPAPAGGKGEGGGKESAVLWK 189
+ L P R R S+ R P +P P PAP A+ +
Sbjct: 1587 SKSRLSPRRSRSGSSPEVKDKPRAAPRAQSGSDSSPEPKAPAPR-----------ALPRR 1635
Query: 190 GAEGGGEKGNRNMAAAPLGDPAREAAQAQTGLRRRRPLELVPRPALPSAPSPRIRCFLAP 249
G KG P+ E + + P R S+P P+ + P
Sbjct: 1636 SRSGSSSKGR---------GPSPEGSSSTESSPEHPPKSRTARRGSRSSPEPKTKSRTPP 1686
Query: 250 GR--SRVGAALTEEQAAGEAAARGLWRRKPAPCPRGACAARLGGRGTGRARRAEFRVAGP 307
R SR LT + AR R + A + + R R RR+ V+ P
Sbjct: 1687 RRRSSRSSPELTRK-------ARLSRRSRSA-----SSSPETRSRTPPRHRRSP-SVSSP 1733
Query: 308 RGVAEEAESGRGWRSWPSFSAVSGGGESPDPAGCSRGKAAPEEPPRVARRAHENRLRTSA 367
AE++ S R RS SP SR +P PR +R+ R
Sbjct: 1734 EP-AEKSRSSRRRRS----------ASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKT 1782
Query: 368 RGLGPGDRRGDGR 380
R DR G +
Sbjct: 1783 RTTRRRDRSGSSQ 1795
Score = 29.6 bits (65), Expect = 5.0
Identities = 71/310 (22%), Positives = 101/310 (32%), Gaps = 41/310 (13%)
Query: 68 PQAKAIN------PHHTASLSPAGRGAQRPPERFLPSSVSAGSAARTLRRGSEARKAQTP 121
P A A+N P A+LS G G P++ + S++RT + + A P
Sbjct: 2290 PTAPAVNLAGARTPAALAALSLTGSGTP-------PTAANYPSSSRTPQAPASANLVG-P 2341
Query: 122 RPAGVAQGSGGGGERWLQGLGPPRGRGLSTAPPPSSLRLLPPTPRPFPPAPAGGKGEGGG 181
R A G R L P AP S L P P G
Sbjct: 2342 RSAHATAPVNIAGSRTAAALAPASLTSARMAPALSGANLTSPR------VPLSAYERVSG 2395
Query: 182 KESAVLWKGAEGG---GEKGNRNMAAAPLGDPAREAAQAQTGLRRRRPLELVPRPALPSA 238
+ S L A M + P+ QA + P + PR +PSA
Sbjct: 2396 RTSPPLLDRARSRTPPSAPSQSRMTSERAPSPSSRMGQAPSQ-SLLPPAQDQPRSPVPSA 2454
Query: 239 PSPRIRCFLA-----PGRSRV--GAALTEEQAAGEAAARGLWRRKPAPCPRGACAARLGG 291
S + RC +A G + GA T +AG+ PAP G + +G
Sbjct: 2455 FSDQSRCLIAQTTPVAGSQSLSSGAVATTTSSAGD---HNGMLSVPAP---GVPHSDVGE 2508
Query: 292 RGTGRARRAEFRVAGPRGVAEEAESGRGWRSWPSFSAVSGGGESPDPAGC----SRGKAA 347
+ +A + E S S S S+ S S +G S G +
Sbjct: 2509 PPASTGAQQPSALAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSL 2568
Query: 348 PEEPPRVARR 357
P +P +R
Sbjct: 2569 PVQPEVALKR 2578
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 54.7 bits (130), Expect = 1e-07
Identities = 100/369 (27%), Positives = 125/369 (33%), Gaps = 67/369 (18%)
Query: 59 NSERSSRHLPQAKAIN--PHHTASLSPAG-RGAQRPPERFLPSSV-SAGSAARTLRRGSE 114
N E+ P K N P + P G RGA P ER P +AG+ RGS+
Sbjct: 272 NGEKGETGAPGLKGENGLPGENGAPGPMGPRGA--PGERGRPGLPGAAGARGNDGARGSD 329
Query: 115 ARKAQTPRPAGVAQGSGGGGERWLQGLGPPRGRGLSTAPPPSSLRLLPPTPRPF-----P 169
+ P P G A G G + +GP G + AP P P+ P
Sbjct: 330 GQPGP-PGPPGTAGFPGSPGAKG--EVGPAGSPGSNGAPGQRG----EPGPQGHAGAQGP 382
Query: 170 PAPAGGKGEGGGK--------ESAVLWKGAEGGGEKGNRNMA---AAPLGDPAREAAQAQ 218
P P G G GGK A GA G N A G+P + A+ +
Sbjct: 383 PGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGE 442
Query: 219 TGLRRRRPLELVPRPALPSAPSPRIRCFLAPGRSRVGAALTEEQAAGEAAARGLWRRKPA 278
G R R +P P A G + E A G A G + A
Sbjct: 443 PGPRGER-----GEAGIPGVPG-------AKGEDGKDGSPGEPGANGLPGAAG---ERGA 487
Query: 279 PCPRGACAAR-LGGRGTGRARRAEFRVAGPRGVAEE-----AESGRGWRSWPSFSAVSGG 332
P RG + G R AGPRG A E G G R P G
Sbjct: 488 PGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGS 547
Query: 333 GESPDPAGCSRGKAAPEEPPRVARRAHENRLRTSARGLGPGDRRGDGRFGGGRGAEGA-G 391
P P G S+G++ PP + GP + G F G +G +GA G
Sbjct: 548 DGKPGPPG-SQGESGRPGPPGPS---------------GPRGQPGVMGFPGPKGNDGAPG 591
Query: 392 SGLPRGGRG 400
RGG G
Sbjct: 592 KNGERGGPG 600
Score = 53.1 bits (126), Expect = 4e-07
Identities = 88/297 (29%), Positives = 97/297 (32%), Gaps = 59/297 (19%)
Query: 121 PRPAGVAQGSGGGGERWLQGLGPPRGRGLSTAPPPSSLRLLPPTPRPFPPAPAGGKGEGG 180
P PAG G GG L G+ PRG P PP P FP AP G GE G
Sbjct: 770 PGPAGQPGDKGEGGAPGLPGIAGPRG------SPGERGETGPPGPAGFPGAP-GQNGEPG 822
Query: 181 GK-ESAVLWKGAEGG-----GEKGNRNMAAAP-----------LGDPAREAAQAQTGLRR 223
GK E + EGG G G A P G P GL
Sbjct: 823 GKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPG 882
Query: 224 RRPLELVPRPALPSA-------PSPRIRCFLAPGRSRVGAALTEEQAAGEAAARGLWRRK 276
P P PS P P APG V + GE + G
Sbjct: 883 PPGSNGNPGPPGPSGSPGKDGPPGPAGNTG-APGSPGVSGPKGDAGQPGEKGSPGAQGPP 941
Query: 277 PAPCPRGACAARLGGRGTGRARRAEFRVAGPRGVAEEAESGRGWRSWPSFSAVSGGGESP 336
AP P G A G RG +AGP G+ G R P V G P
Sbjct: 942 GAPGPLG-IAGITGARG----------LAGPPGMP-------GPRGSPGPQGVKGESGKP 983
Query: 337 DPAGCS--RGKAAPEEPPRVARRAHENRLRTSARGLGPGDRRGDGRFG--GGRGAEG 389
G S RG P+ P +A A E R PG GR G GG+G G
Sbjct: 984 GANGLSGERGPPGPQGLPGLAGTAGE-----PGRDGNPGSDGLPGRDGSPGGKGDRG 1035
Score = 52.0 bits (123), Expect = 9e-07
Identities = 78/305 (25%), Positives = 97/305 (31%), Gaps = 62/305 (20%)
Query: 123 PAGVAQGSGGGGERWLQGLGPPRGR----GLSTAPPPSSLRLLPPTP------------- 165
P G+ G GER G PRG G P +R +P +P
Sbjct: 496 PNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPG 555
Query: 166 ------RPFPPAPAGGKGEGG--GKESAVLWKGAEG-GGEKGNRNMAAAPLGDPAREAAQ 216
RP PP P+G +G+ G G GA G GE+G P G P +
Sbjct: 556 SQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPG-GPGPQGPPGKNGET 614
Query: 217 AQTGLRRRRPLELVPRPALPSAPSPRIRCFLAPGRSRVGAALTEEQAAGEAAARGLWRRK 276
G P P+ P PG + GE G +
Sbjct: 615 GPQG------------PPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPG----E 658
Query: 277 PAPCPRGACAARLGGRGTGRARRAEFRVAGPRGVAEEAESGRGWRSWPSFSAVSGGGESP 336
P P GG+G A GP G+A + GG P
Sbjct: 659 PGPKGDAGAPGAPGGKGDAGAPGER----GPPGLA-------------GAPGLRGGAGPP 701
Query: 337 DPAGCSRGKAAPEEPPRVARRAHENRLRTSARGLGPGDRRGDGRFGGGRGAEGA-GSGLP 395
P G +G A P PP A + GLG +GD GG GA+G G P
Sbjct: 702 GPEG-GKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGP 760
Query: 396 RGGRG 400
RG G
Sbjct: 761 RGPTG 765
Score = 31.6 bits (70), Expect = 1.3
Identities = 74/273 (27%), Positives = 89/273 (32%), Gaps = 50/273 (18%)
Query: 163 PTPRPFPPAPAGGKGEGGGKESAVLWKGAEG-GGEKGNRNMAAAPLGDPAREAAQAQTGL 221
P P PP P G G G S G +G GE G A P G P A +G
Sbjct: 175 PAGPPGPPGPPGTSGHPGSPGS----PGYQGPPGEPGQ----AGPSGPPGPPGAIGPSGP 226
Query: 222 --------RRRRPLEL-VPRP-------ALPSAPSPR-IRCFLA----PGRSRVGAALTE 260
R RP E +P P +P P + R F G + E
Sbjct: 227 AGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGE 286
Query: 261 EQAAGEAAARGLWRRKPAPCPRG--ACAARLGGRGTGRARRAEFRVA--GPRGVA----- 311
GE A G + AP RG G RG AR ++ + GP G A
Sbjct: 287 NGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGS 346
Query: 312 EEAESGRGWRSWPSFSAVSGGGESPDPAGCSRGKAAPEEPPRVARRAHENRLRTSARGLG 371
A+ G P + G P P G G P PP + N +G
Sbjct: 347 PGAKGEVGPAGSPGSNGAPGQRGEPGPQG-HAGAQGPPGPPGI------NGSPGGKGEMG 399
Query: 372 PGDRRGDGRFGGGRGAEG--AGSGLP--RGGRG 400
P G G RG G +G P RGG G
Sbjct: 400 PAGIPGAPGLMGARGPPGPAGANGAPGLRGGAG 432
Score = 29.6 bits (65), Expect = 5.0
Identities = 31/125 (24%), Positives = 37/125 (29%), Gaps = 6/125 (4%)
Query: 121 PRPAGVAQGSGGGGERWLQGL----GPPRGRGLSTAPPPSSLRLLPPTPRPFPPAPAGGK 176
P AG A G G GL G P G+G P P P P GK
Sbjct: 1001 PGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGK 1060
Query: 177 GEGGGKESAVLWKGAEGGGEKGNRNMAAAPLGDPAREAAQAQTGLRRRRPLELVPRPALP 236
G+ GA G P GD + G++ R P P
Sbjct: 1061 SGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFP--GNPGAP 1118
Query: 237 SAPSP 241
+P P
Sbjct: 1119 GSPGP 1123
Score = 29.3 bits (64), Expect = 6.6
Identities = 34/111 (30%), Positives = 40/111 (36%), Gaps = 20/111 (18%)
Query: 83 PAG-RGAQRP--PERFLPSSVSAGSAARTLRRGSEARKAQ--TPRPAGVAQGSGGGGERW 137
PAG RGA P P + G+A RG +P PAG G G
Sbjct: 1078 PAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAG 1137
Query: 138 LQG----LGPPRGRGLSTAPPPSSLRLLPPTPRPFPPAPAGGKGEGGGKES 184
+G GPP G S P P PP P G +GE G + S
Sbjct: 1138 PRGPVGPSGPPGKDGTSGHPGPIG-----------PPGPRGNRGERGSEGS 1177
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 53.9 bits (128), Expect = 2e-07
Identities = 80/321 (24%), Positives = 115/321 (35%), Gaps = 35/321 (10%)
Query: 101 SAGSAARTLRR--------GSEARKAQTPRPAGVAQGSGGGGERWLQGLGPPRGRGLSTA 152
S G + LRR G++ R A T A+G GG G + L G P GRG
Sbjct: 266 SRGGGDKKLRRQGQNAALAGAKRRGAATAGEKPAAKGRGGRGPKSLGGQNPRWGRG---- 321
Query: 153 PPPSSLRLLPPTPRPFPPAPAGGKGEGGGKESAVL-----WKGAEGGGEKGNRNMAAAP- 206
+ + A AG K GGG++ A + K G+K R A+A
Sbjct: 322 ----GKKPRRRGQKATKAAAAGTKRGGGGQQKAAVVGVKSRKKQRRRGKKPRRQKASAAG 377
Query: 207 -----LGDPAREAAQAQTGLRRRRPLELVPRPALPSAPSPRIRCFLAPGRSRVGAALTEE 261
GD + G R++P PR AP+ + R + R G +
Sbjct: 378 AKSRGGGDKKGLREAKRRGDGRKKPRWQNPRRRAQKAPAAKPRGGGSKKPRRRGPKAAKS 437
Query: 262 QAAGEAAARGLW-RRKPAPCPRGACAARLGGRGTGRARRAEFRVAGPRGVAEEAESGRGW 320
+ + G RR+ + A A RG + R + AG + +S G
Sbjct: 438 RGGKSRSGGGKKPRRRGQKARQKAAEAGAESRGDKKQGRQKASAAGTKSRGGGLKSHSGK 497
Query: 321 RSWPSFSAVSGGGESPDPAGC-SRGKAAP-EEPPRVA---RRAHENRLRTSARGLGPGDR 375
W GE AG SRG+ P + P VA R ++ R + + G
Sbjct: 498 NLWRRGQKAEAAGEKATAAGAKSRGRKQPRRQKPAVAGAKSRVGGSKSRQRQKAVAAGAT 557
Query: 376 RGDGRFGGGRGAEGAGSGLPR 396
G GG + + G G PR
Sbjct: 558 SHGG--GGNKQSRGGGGNKPR 576
Score = 53.5 bits (127), Expect = 3e-07
Identities = 91/383 (23%), Positives = 135/383 (35%), Gaps = 77/383 (20%)
Query: 55 PVFENSERSSRHLPQAKAINPHHTASLSPAGRGAQRPPERFLPSSVSAGSAART------ 108
P ++N R ++ P AK P G G+++P R ++ S G +R+
Sbjct: 402 PRWQNPRRRAQKAPAAK-----------PRGGGSKKPRRRGPKAAKSRGGKSRSGGGKKP 450
Query: 109 LRRGSEARKA----------------QTPRPAGVAQGSGG-----GGERWLQGLGPPRGR 147
RRG +AR+ Q AG GG G W +G
Sbjct: 451 RRRGQKARQKAAEAGAESRGDKKQGRQKASAAGTKSRGGGLKSHSGKNLWRRGQKAEAAG 510
Query: 148 GLSTAPPPSSLRLLPPTPRPFPPAPAGGKGEGGGKESAVLWK----GAEGGGEKGNRNMA 203
+TA S PR PA AG K GG +S K GA G GN+
Sbjct: 511 EKATAAGAKSRGR--KQPRRQKPAVAGAKSRVGGSKSRQRQKAVAAGATSHGGGGNKQSR 568
Query: 204 AAPLGDPAREAAQAQTGLRRRRPLELVPRPALPSAPSPRIRCFLAPGRSRVGAALTEEQA 263
G+ R+ Q + R + PG + A +T+ ++
Sbjct: 569 GGG-GNKPRQWGQTAAAAKTRGGGDK------------------QPGWQKAAAGVTKSRS 609
Query: 264 AGEAAARGLWRRKPAPCPRGACAARLGGRGTGRARRAEFRVAGPRGVAEEAESGRGWRSW 323
+ WR+K A GA + + R G+ A A G G+ R W
Sbjct: 610 GD--GGKKAWRQKAAGT--GAKSRKKPWR-RGQKDAAAAEKAWATGATSRGSGGKQPR-W 663
Query: 324 PSFSAVSGGGESPDPAGCSRGKAAPEEPPRVARRAHENRLRTSARGLGPGDRRGD----- 378
+A G ES A + A ++P R ++ + + +A G+ P RRG
Sbjct: 664 QKPAAA--GSESSAAAAVGQEAEARKKPRRRRAKSRGDGGQNAAVGINPWQRRGKKPRLG 721
Query: 379 -GRFGGGRGAEGAGSGLPRGGRG 400
R GGG + G+G RG G
Sbjct: 722 KSRGGGGAKSRGSGGAKSRGSGG 744
Score = 53.1 bits (126), Expect = 4e-07
Identities = 69/255 (27%), Positives = 91/255 (35%), Gaps = 36/255 (14%)
Query: 174 GGKGEGGGKESAVLWKGAEGGGEKGNRNMAAAPLGDPAREAAQAQT---GLRRRRPLELV 230
G KG GKE+ W+ A G G NR G ++AA A T G R R+P
Sbjct: 75 GQKGAVAGKEARQHWQKAAGAGGAENR-------GGGEQKAAAAGTKSLGGRGRKPRRRG 127
Query: 231 PRPALPSAPSPRIRCFLAPGRSRVGAALTEEQAAGEAAARGLWRRKPAPCPRGACAARLG 290
+ A + PR R + ++AA A + KP +R G
Sbjct: 128 QKAAATGSKKPRWRAQKSAAAGSKNRGAGAQKAAAAAGVKSQGGEKPQKAAAAGAKSRSG 187
Query: 291 ---------GRG----TGRARRAEFRVAGPRGVAEEAESGRGWRSWPSFSAVSGGGESPD 337
RG GR R A+ R RG + R + + GGG+ P
Sbjct: 188 KKPRRRGAKSRGDEDKKGRQREAKSRFGKTRG-GRRKKHRRPKPAAGGAKSRRGGGKKPQ 246
Query: 338 PAGCSRGKAAPEEPPRV--ARRAHENRLRTSAR--GLGPGDRRGDGRFG--------GGR 385
KAA RV +R + +LR + L RRG G GGR
Sbjct: 247 KQRRRGQKAATGGKSRVGKSRGGGDKKLRRQGQNAALAGAKRRGAATAGEKPAAKGRGGR 306
Query: 386 GAEGAGSGLPRGGRG 400
G + G PR GRG
Sbjct: 307 GPKSLGGQNPRWGRG 321
Score = 43.5 bits (101), Expect = 3e-04
Identities = 81/341 (23%), Positives = 111/341 (32%), Gaps = 81/341 (23%)
Query: 103 GSAARTLRRGSEARKAQTPRPAGVAQGSGGGGERWLQGLGPPRGRGLSTAPPPSSLRLLP 162
G + RRG +A + +P AQ S G + RG G A
Sbjct: 118 GRGRKPRRRGQKAAATGSKKPRWRAQKSAAAGSK-------NRGAGAQKAA--------- 161
Query: 163 PTPRPFPPAPAGGKGEGGGKESAVLWKGAEGGGEKGNRNMAAAPLGDPAREAAQAQTGLR 222
A AG K +GG K GA+ K R A GD ++ Q + R
Sbjct: 162 --------AAAGVKSQGGEKPQKAAAAGAKSRSGKKPRRRGAKSRGDEDKKGRQREAKSR 213
Query: 223 ------RRRPLELVPRPALPSAPSPRIRCFLAPGRSRVGAALTEEQAAGEAAARGLWRRK 276
RR P+PA A S R G +++ G+ AA G +
Sbjct: 214 FGKTRGGRRKKHRRPKPAAGGAKS----------RRGGGKKPQKQRRRGQKAATG--GKS 261
Query: 277 PAPCPRGACAARLGGRGTGRARRAEFRVAGPRGVAEEAESGRGWRSWPSFSAVS----GG 332
RG +L +G A R + A GRG R S + G
Sbjct: 262 RVGKSRGGGDKKLRRQGQNAALAGAKRRGAATAGEKPAAKGRGGRGPKSLGGQNPRWGRG 321
Query: 333 GESP----------DPAGCSRGKAAPEEPPRVARRAHENRLR------------TSARGL 370
G+ P AG RG ++ V ++ + + R A+
Sbjct: 322 GKKPRRRGQKATKAAAAGTKRGGGGQQKAAVVGVKSRKKQRRRGKKPRRQKASAAGAKSR 381
Query: 371 GPGD--------RRGDGR-----FGGGRGAEGAGSGLPRGG 398
G GD RRGDGR R A+ A + PRGG
Sbjct: 382 GGGDKKGLREAKRRGDGRKKPRWQNPRRRAQKAPAAKPRGG 422
>gi|169213235 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 52.8 bits (125), Expect = 6e-07
Identities = 76/272 (27%), Positives = 98/272 (36%), Gaps = 32/272 (11%)
Query: 130 SGGGGERWLQGLGPPRGRGLSTAPPPSSLRLLPPTPRPFPPAPAGGKGEGGGKESAVLWK 189
+G G + W + PRG + AP R+ P P P PP P GG + +
Sbjct: 38 AGAGSKLWRR----PRGAVSAGAPGSPLYRVSAPPPAPPPPPPPGGPSRSERPRAGLRPG 93
Query: 190 GAEGGGEKGNRNMAAAPLGDPARE--AAQAQTGLRRRRPLELVPRPALPS-APSPRIRCF 246
G G R + G R +A A + +R P PAL + +P P
Sbjct: 94 AFVSPGPLGRRASCSGRAGSAGRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPASPPR 153
Query: 247 LAPGRSRVGAALTEEQAAGEAAARGLWRRKPAPCPRGACAARLGGRGTGRARRAEFRVAG 306
+PG R G+ +A G + A R P GA G G+ R R+ +
Sbjct: 154 ASPG-GRPGS-----EARGRSGAECARRVPLHHGPPGA-----SGVGSERDRKFQLHQTP 202
Query: 307 PRGVAEEAESGRGWRSWPSFSAVSGGGESPDPAGCSR--GKAAPEEPPRVARRAHENRLR 364
RG SG R S V+ P A SR G+A E P R RR
Sbjct: 203 ARGPPFPGISGM-TRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARALRRPR----- 256
Query: 365 TSARGLGPGDRRGDGRFGGGRGAEGAGSGLPR 396
PG G G GGG A G GL R
Sbjct: 257 ------APGRAGGGGPPGGGIPACSIGPGLAR 282
Score = 29.3 bits (64), Expect = 6.6
Identities = 67/257 (26%), Positives = 83/257 (32%), Gaps = 38/257 (14%)
Query: 82 SPAGRGAQRPPERFLPSSVSAGSAARTLRRGSEARKAQTPRPAGVAQ------GSGGGGE 135
SP R + PP P S + R G +P P G GS G
Sbjct: 59 SPLYRVSAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLR 118
Query: 136 RWLQGLGPPRGRGLSTAPPPSSLRLLPPTPRPFPPAPAGGKGEGGGKESAVLWKGAEGGG 195
L + G + A P +LR P P P A GG+ G+E G
Sbjct: 119 CSAAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPGGR------------PGSEARG 166
Query: 196 EKGNRNMAAAPL--GDPAREAAQAQTGLRRRRPLELVPRPALPSAPSPRIRCF-----LA 248
G PL G P G R R +L PA P P I +
Sbjct: 167 RSGAECARRVPLHHGPPGASG----VGSERDRKFQLHQTPA-RGPPFPGISGMTRGPVVL 221
Query: 249 PGRSR-----VGAALTEE--QAAGEAAARGLWRRKPAPCPRGACAARLGGRGTGRARRAE 301
G +R GA+ + +A GE AR L RR AP G GG
Sbjct: 222 SGVNRQHRWPPGASPSRSLGEAGGERPARAL-RRPRAPGRAGGGGPPGGGIPACSIGPGL 280
Query: 302 FRVAGPRGVAEEAESGR 318
R+A G+ ES R
Sbjct: 281 ARLAALGGLPSILESSR 297
>gi|169212744 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 52.8 bits (125), Expect = 6e-07
Identities = 76/272 (27%), Positives = 98/272 (36%), Gaps = 32/272 (11%)
Query: 130 SGGGGERWLQGLGPPRGRGLSTAPPPSSLRLLPPTPRPFPPAPAGGKGEGGGKESAVLWK 189
+G G + W + PRG + AP R+ P P P PP P GG + +
Sbjct: 38 AGAGSKLWRR----PRGAVSAGAPGSPLYRVSAPPPAPPPPPPPGGPSRSERPRAGLRPG 93
Query: 190 GAEGGGEKGNRNMAAAPLGDPARE--AAQAQTGLRRRRPLELVPRPALPS-APSPRIRCF 246
G G R + G R +A A + +R P PAL + +P P
Sbjct: 94 AFVSPGPLGRRASCSGRAGSAGRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPASPPR 153
Query: 247 LAPGRSRVGAALTEEQAAGEAAARGLWRRKPAPCPRGACAARLGGRGTGRARRAEFRVAG 306
+PG R G+ +A G + A R P GA G G+ R R+ +
Sbjct: 154 ASPG-GRPGS-----EARGRSGAECARRVPLHHGPPGA-----SGVGSERDRKFQLHQTP 202
Query: 307 PRGVAEEAESGRGWRSWPSFSAVSGGGESPDPAGCSR--GKAAPEEPPRVARRAHENRLR 364
RG SG R S V+ P A SR G+A E P R RR
Sbjct: 203 ARGPPFPGISGM-TRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARALRRPR----- 256
Query: 365 TSARGLGPGDRRGDGRFGGGRGAEGAGSGLPR 396
PG G G GGG A G GL R
Sbjct: 257 ------APGRAGGGGPPGGGIPACSIGPGLAR 282
Score = 29.3 bits (64), Expect = 6.6
Identities = 67/257 (26%), Positives = 83/257 (32%), Gaps = 38/257 (14%)
Query: 82 SPAGRGAQRPPERFLPSSVSAGSAARTLRRGSEARKAQTPRPAGVAQ------GSGGGGE 135
SP R + PP P S + R G +P P G GS G
Sbjct: 59 SPLYRVSAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLR 118
Query: 136 RWLQGLGPPRGRGLSTAPPPSSLRLLPPTPRPFPPAPAGGKGEGGGKESAVLWKGAEGGG 195
L + G + A P +LR P P P A GG+ G+E G
Sbjct: 119 CSAAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPGGR------------PGSEARG 166
Query: 196 EKGNRNMAAAPL--GDPAREAAQAQTGLRRRRPLELVPRPALPSAPSPRIRCF-----LA 248
G PL G P G R R +L PA P P I +
Sbjct: 167 RSGAECARRVPLHHGPPGASG----VGSERDRKFQLHQTPA-RGPPFPGISGMTRGPVVL 221
Query: 249 PGRSR-----VGAALTEE--QAAGEAAARGLWRRKPAPCPRGACAARLGGRGTGRARRAE 301
G +R GA+ + +A GE AR L RR AP G GG
Sbjct: 222 SGVNRQHRWPPGASPSRSLGEAGGERPARAL-RRPRAPGRAGGGGPPGGGIPACSIGPGL 280
Query: 302 FRVAGPRGVAEEAESGR 318
R+A G+ ES R
Sbjct: 281 ARLAALGGLPSILESSR 297
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 52.4 bits (124), Expect = 7e-07
Identities = 101/393 (25%), Positives = 128/393 (32%), Gaps = 83/393 (21%)
Query: 70 AKAINPHHTASLSPAGRGAQRPPERFLPSSVSAGSAARTLRRGSEARK------AQTPRP 123
A A + HH A +P R A L + V +GS A G A A P P
Sbjct: 35 ASAAHHHHLAPRTPEVRAAAAGA---LGNHVVSGSPAGAAGAGPAAPAEGAPGAAPEPPP 91
Query: 124 AGVAQGSGGGGERWLQGLGPPRGRGLSTAPPPSSLRLLPPT------------------- 164
AG A+ GGG +R G PR + P P + +L PP
Sbjct: 92 AGRARPGGGGPQR--PGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAG 149
Query: 165 PRPFP---------------------PAPAGGKGEGGGKESAVLWKGAEGGGEKGNRNMA 203
P P P P P G G G GK + G G N +
Sbjct: 150 PEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGKPA--------GPGAAQTLNGS 201
Query: 204 AAPLGDPAREAAQAQTGLRRRRPLELVPRPALPSAPSPRIRC--FLAPGRSRVGAALTEE 261
AA L + AA L P L+P P P+AP I+ F+ AA +
Sbjct: 202 AALLN--SHHAAAPAVSLVNNGPAALLPLPK-PAAPGTVIQTPPFVGAAAPPAPAAPSPP 258
Query: 262 QAAGEAAARGLWRRKPAPCPRGACAARLGGRGTGRARRAEFRVAGPRGVAEEAESGRGWR 321
A AA P P P A AR G G A V P +G
Sbjct: 259 AAPAPAAPAA---APPPPPPAPATLARPPGHPAGPPTAAP-AVPPPAAAQNGGSAGAAPA 314
Query: 322 SWPSFSAVSGGGESPDPAGCSRGKAAP----EEPPRVARRAHENRLRTSARG-------- 369
P+ +G P P G + AP E P RV + A +A G
Sbjct: 315 PAPAAGGPAGVSGQPGP-GAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPASTAASM 373
Query: 370 -LGPGDRRG-DGRFGGGRGAEGAGSGLPRGGRG 400
+GP + A G +GLP+G G
Sbjct: 374 VIGPTMQGALPSPAAVPPPAPGTPTGLPKGAAG 406
>gi|169206171 PREDICTED: hypothetical protein [Homo sapiens]
Length = 466
Score = 51.6 bits (122), Expect = 1e-06
Identities = 78/254 (30%), Positives = 92/254 (36%), Gaps = 33/254 (12%)
Query: 85 GRGAQRPPERFLPSSVSAGSAARTLRRGSEARKA--QTPRPAGVAQGSGGGGERWLQGLG 142
G PP R L + + AR RGSE R T P+ V G G R G+
Sbjct: 207 GGSGTPPPPRALWNRHGGAAGARAQVRGSEKRACPGSTLPPSSVLAGCVGTRARGHGGVQ 266
Query: 143 PPR-------GRGLSTAPPPSSLRLLPPTPRPFPPAPAGGKGEGGGKESAVLWKGAEGGG 195
R G T P PS R P PR P PA +G GGG L G G
Sbjct: 267 RQRFSAPSSHSTGARTLPTPSRARPGKPAPRGSAP-PARLRGGGGGSGLTQLVGSGRGSG 325
Query: 196 --EKGNRNMAAAPLGDPAREAAQAQTGLRRRRPLELVPRPALPSAP-SPRIRCFLAPGRS 252
+ A G A G+ RPL PA S P SP +R F
Sbjct: 326 VTHSVGTHALATRRGSRAPRPVGVLRGVPHFRPLS---SPAPQSPPRSPSVRAF----GP 378
Query: 253 RVGAA-LTEEQAAGEAAARGLWRRKPAPCPRGA---CAARLGGRGTGRARRAEFRVAGPR 308
R+GA L+ QA AA G+ P+P C GG RRAE G R
Sbjct: 379 RLGAGRLSCPQAPRAAALPGIAVLAPSPAHDWGGQRCEGCGGGSQPFAGRRAE---RGKR 435
Query: 309 GVAEEAESGRGWRS 322
G +G WR+
Sbjct: 436 G------AGVPWRT 443
Score = 42.7 bits (99), Expect = 6e-04
Identities = 93/387 (24%), Positives = 129/387 (33%), Gaps = 83/387 (21%)
Query: 29 IPSLGRNLHVSPGTVLSDLQPLGITFPVFENSERSSRHLPQAKAINPHHTASLSPAGR-- 86
+PSLG T LS P FP ++ R +P+ + +HT PAG
Sbjct: 20 LPSLGEKAL----TALSHQNP---EFPQIARNDCWDR-VPRGSVTDSNHT----PAGLDC 67
Query: 87 GAQRPPERFLPSSVSAGSAARTLRRGSEARKAQTPRPAGVAQGSGGGGERWLQGLGPPRG 146
G RP S + T RR +A +A P+ + S W + G
Sbjct: 68 GPTRP------------SGSLTTRRPRDAGEAAVSGPSRQRRTSRARTALWGRRSRRAAG 115
Query: 147 RGLSTAPPPSSLRLLPPTPRPFPPAPAGGKGEGGGKESAVL------WKGAEGGGEKGNR 200
GL A PAP+G + GG ++ L W + GGG +
Sbjct: 116 PGLDCAGSA--------------PAPSGAQSCGGPAPASALRRPLTQWDASGGGGRASHS 161
Query: 201 NMAAAPLGDPAREAAQAQTGLRRRRPLELVPRPALPSAPSPRIRCFLAPGRSRVGAALTE 260
A G ++ G RR+ PL L P ++ R G +
Sbjct: 162 GPRAGTPGG----GRSSRAGARRKTPLSLCP-----------LKLRKGSSRRCQGLGSSW 206
Query: 261 EQAAGEAAARGLWRRKPAPCPRGACAARLGGRGT------GRARRAEFRVAGPRGVAEEA 314
+ R LW R GA AR RG+ G +AG G
Sbjct: 207 GGSGTPPPPRALWNRH-----GGAAGARAQVRGSEKRACPGSTLPPSSVLAGCVGTRARG 261
Query: 315 ESGRGWRSWPSFSAVSGGGES-PDPAGCSRGKAAP--EEPPRVARRAHENRLRTSARGLG 371
G + + + S+ S G + P P+ GK AP PP RLR G G
Sbjct: 262 HGGVQRQRFSAPSSHSTGARTLPTPSRARPGKPAPRGSAPPA--------RLRGGGGGSG 313
Query: 372 PGDRRGDGRFGGGRGAEGAGSGLPRGG 398
G GR G + G + R G
Sbjct: 314 LTQLVGSGRGSGVTHSVGTHALATRRG 340
>gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo
sapiens]
Length = 647
Score = 50.8 bits (120), Expect = 2e-06
Identities = 81/262 (30%), Positives = 98/262 (37%), Gaps = 38/262 (14%)
Query: 96 LPSSVSAGSAARTLRRGSEARKAQTPRP---AGVAQGSGGGGERWLQGLGPPRGRGLSTA 152
LP +S SAA + R + RP G A G G GE G+G RG TA
Sbjct: 268 LPRLLSMPSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEHPACGVGLARG----TA 323
Query: 153 PPPSSLRLLPPTPRPFPPAPAGGKGEGGGKESAVLWKGAEGGGEKGNRNMAAAPLGDPAR 212
P P+S L PR AGG + A G++ R+ A +PAR
Sbjct: 324 PQPASTWALAARPR------AGGTWTSRFEAQRGC---AHQDGQRRTRDGAGNHASEPAR 374
Query: 213 EAAQAQTGLRRRRPLELVPRPALPSAPSPRIRCF--LAPGRSRVGAALTEEQAAGEAAAR 270
+ RR+RP L PR +L P R C G +R G A A AR
Sbjct: 375 VWSPPP---RRQRPRRL-PRASLQEEPKRRPPCARPSGAGPAREGPAAWPGGAPTPPHAR 430
Query: 271 GLWRRK-PAPCPR---------GACAARLGGRG--TGRARRAEFRVAGPRGVAEEAESGR 318
RR+ P P PR G A GRG G RA R A RG A S
Sbjct: 431 PTGRRQDPEPGPRAPRGGPASSGWHAGSAAGRGWDPGGGSRARRRAARGRGCLRSARSSP 490
Query: 319 GWRSWPSFSAV----SGGGESP 336
R S +V S G+ P
Sbjct: 491 HARPLGSSRSVRLLRSAAGKGP 512
Score = 35.8 bits (81), Expect = 0.070
Identities = 56/201 (27%), Positives = 71/201 (35%), Gaps = 31/201 (15%)
Query: 91 PPERFLPSSVSAGSAARTLRRGSEARKAQTPRPAGVAQGSGGGGERWLQGLGPPRGRGLS 150
PP R P R L R S + + P G+G E GP G +
Sbjct: 379 PPRRQRP---------RRLPRASLQEEPKRRPPCARPSGAGPARE------GPAAWPGGA 423
Query: 151 TAPPPSSLRLLPPTPRPFPPAPAGGKGEGGGKESAVLWKGAEGGGEKGNRNMAAAPLG-- 208
PP + P P P AP GG G + +G + GG R AA G
Sbjct: 424 PTPPHARPTGRRQDPEPGPRAPRGGPASSGWHAGSAAGRGWDPGGGSRARRRAARGRGCL 483
Query: 209 DPAREAAQAQTGLRRRRPLELVPRPA--LPSAPSPRIRCFLAPG-----RSRVGAALTEE 261
AR + A+ L R + L+ A PS S +R + G SR G T
Sbjct: 484 RSARSSPHARP-LGSSRSVRLLRSAAGKGPSLDSREVRVLIERGCQWWFLSRNGVDYT-- 540
Query: 262 QAAGEAAARGLWRRKPAPCPR 282
+ RGL R AP PR
Sbjct: 541 -TGPRSEQRGLAR---APLPR 557
>gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo
sapiens]
Length = 647
Score = 50.4 bits (119), Expect = 3e-06
Identities = 81/262 (30%), Positives = 97/262 (37%), Gaps = 38/262 (14%)
Query: 96 LPSSVSAGSAARTLRRGSEARKAQTPRP---AGVAQGSGGGGERWLQGLGPPRGRGLSTA 152
LP +S SAA + R + RP G A G G GE G+G RG TA
Sbjct: 268 LPRLLSMPSAAARPCGAALPRSGFSGRPRGRGGAAAGRGSRGEHPACGVGLARG----TA 323
Query: 153 PPPSSLRLLPPTPRPFPPAPAGGKGEGGGKESAVLWKGAEGGGEKGNRNMAAAPLGDPAR 212
P P+S L PR AGG + A G++ R+ A +PAR
Sbjct: 324 PQPASTWALAARPR------AGGTWTSRFEAQRGC---AHQDGQRRTRDGAGNHASEPAR 374
Query: 213 EAAQAQTGLRRRRPLELVPRPALPSAPSPRIRCF--LAPGRSRVGAALTEEQAAGEAAAR 270
+ RR+RP L PR +L P R C G +R G A A AR
Sbjct: 375 VWSPPP---RRQRPRRL-PRASLQEEPKRRPPCARPSGAGPAREGPAAWPGGAPTPPHAR 430
Query: 271 GLWRRK-PAPCPR---------GACAARLGGRG--TGRARRAEFRVAGPRGVAEEAESGR 318
RR+ P P PR G A GRG G RA R A RG A S
Sbjct: 431 PTGRRQDPEPGPRAPRGGPASSGWHAGSAAGRGWDPGGGSRARRRAARGRGCLRSARSSP 490
Query: 319 GWRSWPSFSAV----SGGGESP 336
R S +V S G P
Sbjct: 491 HARPLGSSRSVRLLRSAAGRGP 512
Score = 35.8 bits (81), Expect = 0.070
Identities = 56/201 (27%), Positives = 71/201 (35%), Gaps = 31/201 (15%)
Query: 91 PPERFLPSSVSAGSAARTLRRGSEARKAQTPRPAGVAQGSGGGGERWLQGLGPPRGRGLS 150
PP R P R L R S + + P G+G E GP G +
Sbjct: 379 PPRRQRP---------RRLPRASLQEEPKRRPPCARPSGAGPARE------GPAAWPGGA 423
Query: 151 TAPPPSSLRLLPPTPRPFPPAPAGGKGEGGGKESAVLWKGAEGGGEKGNRNMAAAPLG-- 208
PP + P P P AP GG G + +G + GG R AA G
Sbjct: 424 PTPPHARPTGRRQDPEPGPRAPRGGPASSGWHAGSAAGRGWDPGGGSRARRRAARGRGCL 483
Query: 209 DPAREAAQAQTGLRRRRPLELVPRPA--LPSAPSPRIRCFLAPG-----RSRVGAALTEE 261
AR + A+ L R + L+ A PS S +R + G SR G T
Sbjct: 484 RSARSSPHARP-LGSSRSVRLLRSAAGRGPSLDSREVRVLIERGCQWWFLSRNGVDYT-- 540
Query: 262 QAAGEAAARGLWRRKPAPCPR 282
+ RGL R AP PR
Sbjct: 541 -TGPRSEQRGLAR---APLPR 557
>gi|61966741 TMF regulated nuclear protein [Homo sapiens]
Length = 227
Score = 50.4 bits (119), Expect = 3e-06
Identities = 67/204 (32%), Positives = 82/204 (40%), Gaps = 40/204 (19%)
Query: 143 PPRGRGLSTAPPPSSLRLLP-PTPRPFPPAPAGGKGEGGGKESAVL--WK----GAEGGG 195
PPR S+ PPP + L P PTP PP P G E L W+ G G
Sbjct: 25 PPRDPMPSSQPPPPTPTLTPTPTPGQSPPLPDAAGASAGAAEDQELQRWRQGASGIAGLA 84
Query: 196 EKGNRNMAAAPLGDPAREAAQAQTGLRRRRPLELVPRPALPSAPSPRI----RCFL---- 247
G + AAA G A E A+A RRR LE+ R L S R+ R FL
Sbjct: 85 GPGGGSGAAAGAGGRALELAEA-----RRRLLEVEGRRRLVSELESRVLQLHRVFLAAEL 139
Query: 248 -----APGRSRVGAALTEEQ----AAGEAAARGLWR-RKPAPCPRGACAARLGG---RGT 294
A SR+ + + + A G +G R R+ P A A LGG G
Sbjct: 140 RLAHRAESLSRLSGGVAQAELYLAAHGSRLKKGPRRGRRGRPPALLASALGLGGCVPWGA 199
Query: 295 GRARR-------AEFRVAGPRGVA 311
GR RR + FR + PRG A
Sbjct: 200 GRLRRGHGPEPDSPFRRSPPRGPA 223
Score = 38.5 bits (88), Expect = 0.011
Identities = 57/199 (28%), Positives = 70/199 (35%), Gaps = 27/199 (13%)
Query: 215 AQAQTGLRRRRPLELVPRPAL-PSAPSPRIRCFLAPGRS---------RVGAALTEEQAA 264
AQ T +R P P P+ P P+P + PG+S GAA +E
Sbjct: 13 AQEGTAEQRSPPPPRDPMPSSQPPPPTPTLTPTPTPGQSPPLPDAAGASAGAAEDQELQR 72
Query: 265 GEAAARGLWRRKPAPCPRGACAARLGGRGT--GRARRAEFRVAGPRGVAEEAESG----- 317
A G+ P AA GGR ARR V G R + E ES
Sbjct: 73 WRQGASGI-AGLAGPGGGSGAAAGAGGRALELAEARRRLLEVEGRRRLVSELESRVLQLH 131
Query: 318 --------RGWRSWPSFSAVSGGGESPDPAGCSRGKAAPEEPPRVARRAHENRLRTSARG 369
R S S +SGG + + G ++ PR RR L SA G
Sbjct: 132 RVFLAAELRLAHRAESLSRLSGGVAQAELYLAAHGSRL-KKGPRRGRRGRPPALLASALG 190
Query: 370 LGPGDRRGDGRFGGGRGAE 388
LG G GR G G E
Sbjct: 191 LGGCVPWGAGRLRRGHGPE 209
>gi|169206489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 50.1 bits (118), Expect = 4e-06
Identities = 82/278 (29%), Positives = 99/278 (35%), Gaps = 38/278 (13%)
Query: 61 ERSSRH--LPQAKAINPHHTASLSPAGRGAQRPPERFLPSSVSAGSAAR-------TLRR 111
ERSSR L +KA AS P R A P + G R +R
Sbjct: 286 ERSSREPLLDPSKAAR----ASALPTARVAHASPPSLAAAQWRLGGGKRKPTVLKGAVRT 341
Query: 112 GSEARKAQTPRPAGVAQGSGGGGERWLQGLGPPRGRGLSTAPPPSSLRLLPPTPRPFPPA 171
+ + PR +G A G E W + G T P PS R P PR P
Sbjct: 342 DLSTAEEEDPR-SGRALEPAQGSELWARAERHGGSSGARTLPTPSRARPGKPAPRGSAP- 399
Query: 172 PAGGKGEGGGKESAVLWKGAEGGG--EKGNRNMAAAPLGDPAREAAQAQTGLRRRRPLEL 229
PA +G GGG L G G + A G A G+ RPL
Sbjct: 400 PARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRPVGVLRGVPHFRPLS- 458
Query: 230 VPRPALPSAP-SPRIRCFLAPGRSRVGAA-LTEEQAAGEAAARGLWRRKPAPCPRGA--- 284
PA S P SP +R F R+GA L+ QA AA G+ P+P
Sbjct: 459 --SPAPQSPPRSPSVRAF----GPRLGAGRLSCPQAPRAAALPGIAVLAPSPAHDWGGQR 512
Query: 285 CAARLGGRGTGRARRAEFRVAGPRGVAEEAESGRGWRS 322
C GG RRAE G RG +G WR+
Sbjct: 513 CEGCGGGSQPFAGRRAE---RGKRG------AGVPWRT 541
Score = 41.2 bits (95), Expect = 0.002
Identities = 93/372 (25%), Positives = 125/372 (33%), Gaps = 77/372 (20%)
Query: 29 IPSLGRNLHVSPGTVLSDLQPLGITFPVFENSERSSRHLPQAKAINPHHTASLSPAGR-- 86
+PSLG T LS P FP ++ R +P+ + +HT PAG
Sbjct: 20 LPSLGEKAL----TALSHQNP---EFPQIARNDCWDR-VPRGSVTDSNHT----PAGLDC 67
Query: 87 GAQRPPERFLPSSVSAGSAARTLRRGSEARKAQTPRPAGVAQGSGGGGERWLQGLGPPRG 146
G RP S + T RR +A +A P+ + S W + G
Sbjct: 68 GPTRP------------SGSLTTRRPRDAGEAAVSGPSRQRRTSRARTALWGRRSRRAAG 115
Query: 147 RGLSTAPPPSSLRLLPPTPRPFPPAPAGGKGEGGGKESAVLWK-----GAEGGGEKGNRN 201
GL A PAP+G + GG ++ L + A GGG +G+ +
Sbjct: 116 PGLDCAGSA--------------PAPSGAQSCGGPAPASALRRPLTQWDASGGGGRGSHS 161
Query: 202 MAAAPLGDPAREAAQAQTGLRRRRPLELVPRPALPSAPSPRIRCFLAPGRSRVGAALTEE 261
A G P ++ G RR+ PL L P ++ R G +
Sbjct: 162 GPRA--GTPGG-GRSSRAGARRKTPLSLCP-----------LKLRKGSSRRCQGLGSSWG 207
Query: 262 QAAGEAAARGLWRRKPAPCPRGACAARLGGRGT------GRARRAEFRVAGPRGVAEEAE 315
+ R LW R GA AR RG+ G +AG G
Sbjct: 208 GSGTPPPPRALWNRH-----GGAAGARAQVRGSEKRACPGSTLPPSSVLAGCVGTRARGH 262
Query: 316 SG--RGWRSWPSFSAVSGGGESPDPAGCSRGKAAPEEPPRVARRAHENRLRTSARGLGPG 373
G R S PS + SGG P G R P P A RA A P
Sbjct: 263 GGVQRQRFSAPSSHSTSGG----RPTG-ERSSREPLLDPSKAARASALPTARVAHASPPS 317
Query: 374 DRRGDGRFGGGR 385
R GGG+
Sbjct: 318 LAAAQWRLGGGK 329
Score = 37.4 bits (85), Expect = 0.024
Identities = 81/328 (24%), Positives = 107/328 (32%), Gaps = 59/328 (17%)
Query: 85 GRGAQRPPERFLPSSVSAGSAARTLRRGSEARKAQTPRPAGVAQGSGGGGERWLQGLGPP 144
GRG+ P P R+ R G+ + + P + +GS R QGLG
Sbjct: 156 GRGSHSGPRAGTPGG------GRSSRAGARRKTPLSLCPLKLRKGSS----RRCQGLGSS 205
Query: 145 RGRGLSTAPPPSSLRLLPPTPRPFPPAPAGGKGEGGGKESAVLWKGAEGGGEKGNRNMAA 204
G G T PPP +L GG + +G+E G+ +
Sbjct: 206 WG-GSGTPPPPRAL----------------WNRHGGAAGARAQVRGSEKRACPGSTLPPS 248
Query: 205 APLGDPAREAAQAQTGLRRRRPLELVPRPALPSAPSPRIRCFLAP-GRSRVGAALTEEQA 263
+ L A+ G++R+R SAPS P G L +
Sbjct: 249 SVLAGCVGTRARGHGGVQRQRF----------SAPSSHSTSGGRPTGERSSREPLLDPSK 298
Query: 264 AGEAAARGLWRRKPAPCPRGACAA-RLGG--------RGTGRARRAEFRVAGPRG--VAE 312
A A+A R A P A A RLGG +G R + PR E
Sbjct: 299 AARASALPTARVAHASPPSLAAAQWRLGGGKRKPTVLKGAVRTDLSTAEEEDPRSGRALE 358
Query: 313 EAESGRGWRSWPSFSAVSGGGESPDPAGCSRGKAAP--EEPPRVARRAHENRLRTSARGL 370
A+ W SG P P+ GK AP PP RLR G
Sbjct: 359 PAQGSELWARAERHGGSSGARTLPTPSRARPGKPAPRGSAPPA--------RLRGGGGGS 410
Query: 371 GPGDRRGDGRFGGGRGAEGAGSGLPRGG 398
G G GR G + G + R G
Sbjct: 411 GLTQLVGSGRGSGVTHSVGTHALATRRG 438
>gi|169205942 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 50.1 bits (118), Expect = 4e-06
Identities = 82/278 (29%), Positives = 99/278 (35%), Gaps = 38/278 (13%)
Query: 61 ERSSRH--LPQAKAINPHHTASLSPAGRGAQRPPERFLPSSVSAGSAAR-------TLRR 111
ERSSR L +KA AS P R A P + G R +R
Sbjct: 286 ERSSREPLLDPSKAAR----ASALPTARVAHASPPSLAAAQWRLGGGKRKPTVLKGAVRT 341
Query: 112 GSEARKAQTPRPAGVAQGSGGGGERWLQGLGPPRGRGLSTAPPPSSLRLLPPTPRPFPPA 171
+ + PR +G A G E W + G T P PS R P PR P
Sbjct: 342 DLSTAEEEDPR-SGRALEPAQGSELWARAERHGGSSGARTLPTPSRARPGKPAPRGSAP- 399
Query: 172 PAGGKGEGGGKESAVLWKGAEGGG--EKGNRNMAAAPLGDPAREAAQAQTGLRRRRPLEL 229
PA +G GGG L G G + A G A G+ RPL
Sbjct: 400 PARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRPVGVLRGVPHFRPLS- 458
Query: 230 VPRPALPSAP-SPRIRCFLAPGRSRVGAA-LTEEQAAGEAAARGLWRRKPAPCPRGA--- 284
PA S P SP +R F R+GA L+ QA AA G+ P+P
Sbjct: 459 --SPAPQSPPRSPSVRAF----GPRLGAGRLSCPQAPRAAALPGIAVLAPSPAHDWGGQR 512
Query: 285 CAARLGGRGTGRARRAEFRVAGPRGVAEEAESGRGWRS 322
C GG RRAE G RG +G WR+
Sbjct: 513 CEGCGGGSQPFAGRRAE---RGKRG------AGVPWRT 541
Score = 41.2 bits (95), Expect = 0.002
Identities = 93/372 (25%), Positives = 125/372 (33%), Gaps = 77/372 (20%)
Query: 29 IPSLGRNLHVSPGTVLSDLQPLGITFPVFENSERSSRHLPQAKAINPHHTASLSPAGR-- 86
+PSLG T LS P FP ++ R +P+ + +HT PAG
Sbjct: 20 LPSLGEKAL----TALSHQNP---EFPQIARNDCWDR-VPRGSVTDSNHT----PAGLDC 67
Query: 87 GAQRPPERFLPSSVSAGSAARTLRRGSEARKAQTPRPAGVAQGSGGGGERWLQGLGPPRG 146
G RP S + T RR +A +A P+ + S W + G
Sbjct: 68 GPTRP------------SGSLTTRRPRDAGEAAVSGPSRQRRTSRARTALWGRRSRRAAG 115
Query: 147 RGLSTAPPPSSLRLLPPTPRPFPPAPAGGKGEGGGKESAVLWK-----GAEGGGEKGNRN 201
GL A PAP+G + GG ++ L + A GGG +G+ +
Sbjct: 116 PGLDCAGSA--------------PAPSGAQSCGGPAPASALRRPLTQWDASGGGGRGSHS 161
Query: 202 MAAAPLGDPAREAAQAQTGLRRRRPLELVPRPALPSAPSPRIRCFLAPGRSRVGAALTEE 261
A G P ++ G RR+ PL L P ++ R G +
Sbjct: 162 GPRA--GTPGG-GRSSRAGARRKTPLSLCP-----------LKLRKGSSRRCQGLGSSWG 207
Query: 262 QAAGEAAARGLWRRKPAPCPRGACAARLGGRGT------GRARRAEFRVAGPRGVAEEAE 315
+ R LW R GA AR RG+ G +AG G
Sbjct: 208 GSGTPPPPRALWNRH-----GGAAGARAQVRGSEKRACPGSTLPPSSVLAGCVGTRARGH 262
Query: 316 SG--RGWRSWPSFSAVSGGGESPDPAGCSRGKAAPEEPPRVARRAHENRLRTSARGLGPG 373
G R S PS + SGG P G R P P A RA A P
Sbjct: 263 GGVQRQRFSAPSSHSTSGG----RPTG-ERSSREPLLDPSKAARASALPTARVAHASPPS 317
Query: 374 DRRGDGRFGGGR 385
R GGG+
Sbjct: 318 LAAAQWRLGGGK 329
Score = 37.4 bits (85), Expect = 0.024
Identities = 81/328 (24%), Positives = 107/328 (32%), Gaps = 59/328 (17%)
Query: 85 GRGAQRPPERFLPSSVSAGSAARTLRRGSEARKAQTPRPAGVAQGSGGGGERWLQGLGPP 144
GRG+ P P R+ R G+ + + P + +GS R QGLG
Sbjct: 156 GRGSHSGPRAGTPGG------GRSSRAGARRKTPLSLCPLKLRKGSS----RRCQGLGSS 205
Query: 145 RGRGLSTAPPPSSLRLLPPTPRPFPPAPAGGKGEGGGKESAVLWKGAEGGGEKGNRNMAA 204
G G T PPP +L GG + +G+E G+ +
Sbjct: 206 WG-GSGTPPPPRAL----------------WNRHGGAAGARAQVRGSEKRACPGSTLPPS 248
Query: 205 APLGDPAREAAQAQTGLRRRRPLELVPRPALPSAPSPRIRCFLAP-GRSRVGAALTEEQA 263
+ L A+ G++R+R SAPS P G L +
Sbjct: 249 SVLAGCVGTRARGHGGVQRQRF----------SAPSSHSTSGGRPTGERSSREPLLDPSK 298
Query: 264 AGEAAARGLWRRKPAPCPRGACAA-RLGG--------RGTGRARRAEFRVAGPRG--VAE 312
A A+A R A P A A RLGG +G R + PR E
Sbjct: 299 AARASALPTARVAHASPPSLAAAQWRLGGGKRKPTVLKGAVRTDLSTAEEEDPRSGRALE 358
Query: 313 EAESGRGWRSWPSFSAVSGGGESPDPAGCSRGKAAP--EEPPRVARRAHENRLRTSARGL 370
A+ W SG P P+ GK AP PP RLR G
Sbjct: 359 PAQGSELWARAERHGGSSGARTLPTPSRARPGKPAPRGSAPPA--------RLRGGGGGS 410
Query: 371 GPGDRRGDGRFGGGRGAEGAGSGLPRGG 398
G G GR G + G + R G
Sbjct: 411 GLTQLVGSGRGSGVTHSVGTHALATRRG 438
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 49.7 bits (117), Expect = 5e-06
Identities = 84/332 (25%), Positives = 107/332 (32%), Gaps = 51/332 (15%)
Query: 78 TASLSPAGRGAQRPPERFLPSSVSAGSAARTLRRGSEARKAQT--PRPAGVAQGSGGGGE 135
T + P G + + AGSA RG+ + +T P PAG A G G+
Sbjct: 788 TGPIGPPGPAGANGEKGEVGPPGPAGSAGA---RGAPGERGETGPPGPAGFAGPPGADGQ 844
Query: 136 RWLQG-LGPPRGRGLSTAPPPSSLRLLPPTPRPFPPAPAGGKGEGGGKESAVLWKGAEGG 194
+G G +G + AP P P+ P P P G G G + GA+G
Sbjct: 845 PGAKGEQGEAGQKGDAGAPGPQG-----PSGAPGPQGPTGVTGPKGAR-------GAQGP 892
Query: 195 GEKGNRNMAAAPLGDPAREAAQAQTGLRRRRPLELVPRPALPSAPSPRIRCFLAPGRSRV 254
AA +G P P P P P G+
Sbjct: 893 PGATGFPGAAGRVGPPGSNG-----------------NPGPPGPPGPS-------GKDGP 928
Query: 255 GAALTEEQAAGEAAARGLWRRKPAPCPRGACAARLGGRGTGRARRAEFRVAGPRGVAEEA 314
A + G A GL + PA P G +AG RG+
Sbjct: 929 KGARGDSGPPGRAGEPGL--QGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVG-L 985
Query: 315 ESGRGWRSWPSFSAVSG--GGESPDPAGCSRGKAAPEEPPRVARRAHENRLRTSARGLGP 372
RG R +P SG G + A RG P PP + A E S GP
Sbjct: 986 PGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGP 1045
Query: 373 GDRRGDGRFGGGRGAEGA----GSGLPRGGRG 400
R G G RG GA G+ P G G
Sbjct: 1046 PGRDGAAGVKGDRGETGAVGAPGAPGPPGSPG 1077
Score = 45.4 bits (106), Expect = 9e-05
Identities = 91/352 (25%), Positives = 117/352 (33%), Gaps = 63/352 (17%)
Query: 103 GSAARTLRRGSEARKAQ-----TPRPAGVAQGSGGGGERWLQGL-GPPRGRGLSTAP--- 153
G A T RG E + TP G A SG G + G G G++ AP
Sbjct: 375 GEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFP 434
Query: 154 -------PPSSLRLLPPTPRPFPPAPAGGKGEGG--GKESAVLWKGAEG-GGEKGNRNM- 202
P + L P + P AG KGE G G+ +GA G GE+G R
Sbjct: 435 GPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGAR 494
Query: 203 ----AAAPLGDPAREAAQAQTGLRRRRPLELVPRPALPSAPSPRIRCFLAPGRSRVGAAL 258
P+G P A G + L AP R LA + G
Sbjct: 495 GEPGGVGPIGPPGERGAPGNRGFPGQDGLA-----GPKGAPGERGPSGLAGPKGANGDPG 549
Query: 259 TEEQAAGEAAARGLWRRKPAPCPRGACA--------ARLGGRGT--GRARRAEFRVAGPR 308
+ G ARGL R P+G R G G R + GP+
Sbjct: 550 RPGEP-GLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPK 608
Query: 309 GV-AEEAESGR-------GWRSWPSFSAVSGGGESPDPAGCS--------------RGKA 346
G E ++G G R P +G P PAG + +G
Sbjct: 609 GANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLP 668
Query: 347 APEEPPRVARRAHENRLRTSARGLGPGDRRGDGRFGGGRGAEGA-GSGLPRG 397
P PP + + + A G RG+ F G RG+ GA G PRG
Sbjct: 669 GPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRG 720
Score = 39.3 bits (90), Expect = 0.006
Identities = 80/300 (26%), Positives = 98/300 (32%), Gaps = 49/300 (16%)
Query: 123 PAGVAQGSGGGGERWLQGLGPPRGRGLS--TAPPPSSLRLLPPTPRPFPPAPAGGKGEGG 180
P G G G QGL PRG + T P + P PP G GE G
Sbjct: 697 PRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERG 756
Query: 181 --------GKESAVLWKGAEGG-GEKGNRNMAAAPLGDPAREAAQAQTGLRRRRPLELVP 231
G V KG EG G+ G R + P+G P A + G E+ P
Sbjct: 757 AAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTG-PIGPPGPAGANGEKG-------EVGP 808
Query: 232 RPALPSA---PSPRIRCFLAP----GRSRVGAALTEEQAAGEAAARGLWRRKPAPCPRGA 284
SA +P R P G + A + A GE G AP P+G
Sbjct: 809 PGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGP 868
Query: 285 CAARLGGRGTGRARRAEFRVAGPRGVAEEAESGRGWRSWPSFSAVSGGGESPDPAGCSRG 344
A TG V GP+G RG + P + G P G S G
Sbjct: 869 SGAPGPQGPTG--------VTGPKG-------ARGAQGPPGATGFPGAAGRVGPPG-SNG 912
Query: 345 KAAPEEPPRVARRAHENRLRTSARGLGPGDRRGDGRFGGGRGAEG----AGSGLPRGGRG 400
P PP + + R + GP R G+ G G G G P G G
Sbjct: 913 NPGPPGPPGPSGKDGPKGARGDS---GPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEG 969
Score = 38.5 bits (88), Expect = 0.011
Identities = 77/301 (25%), Positives = 94/301 (31%), Gaps = 66/301 (21%)
Query: 123 PAGVAQGSGGGGERWLQGLGPPRGRGLSTAPPPSSLRLLPPTPRPFPPAPAGGKGEGGGK 182
PAG G G++ +G PRGR P + P P P PP P G G GG
Sbjct: 127 PAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGN------PGP-PGPPGPPGPPGLGG-- 177
Query: 183 ESAVLWKGAEGGGEKGNRNMAAAPLGDPAREAAQAQTGLRRRRPLELVPR--PALPSAPS 240
N AA G +A AQ G+ + + PR P AP
Sbjct: 178 ------------------NFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPG 219
Query: 241 PRIRCFLAPGRSRVGAALTEEQAAGEAAARGLWRRKPAPCPRGACAARLGGRGTGRARRA 300
P+ G E +G RG P P + G G +
Sbjct: 220 PQ-------GFQGNPGEPGEPGVSGPMGPRG----PPGPPGKPGDDGEAGKPG----KAG 264
Query: 301 EFRVAGPRGV-----AEEAESGRGWRSWPSFSAVSGGGESPDPAGCSRGKAAPEEP-PRV 354
E GP+G +G R +P G +P G S P P
Sbjct: 265 ERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMG 324
Query: 355 ARRAHENRLRTSARGLGPGDRRGDGRFG-----------GGRGAEGA----GSGLPRGGR 399
R R RT G G R DG+ G GG G GA G P G R
Sbjct: 325 PRGLPGERGRTGPAG-AAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGAR 383
Query: 400 G 400
G
Sbjct: 384 G 384
Score = 38.5 bits (88), Expect = 0.011
Identities = 51/189 (26%), Positives = 65/189 (34%), Gaps = 18/189 (9%)
Query: 87 GAQRPPERFLPSSVSAGSAARTLRRGSEARKAQTPRPAGVAQGSGGGGERWLQGLGPPRG 146
GA PP S G A T ++G +A P G SG G R +QG PRG
Sbjct: 1068 GAPGPPG-------SPGPAGPTGKQGDRG-EAGAQGPMGP---SGPAGARGIQGPQGPRG 1116
Query: 147 -RGLSTAPPPSSLR----LLPPTPRPFPPAPAGGKGEGG--GKESAVLWKGAEGGGEKGN 199
+G + P L+ P PP P+G +G G G G G K
Sbjct: 1117 DKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDG 1176
Query: 200 RNMAAAPLGDPAREAAQAQTGLRRRRPLELVPRPALPSAPSPRIRCFLAPGRSRVGAALT 259
N P+G P +TG P P P P + F G G
Sbjct: 1177 ANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGPREKGPDPL 1236
Query: 260 EEQAAGEAA 268
+ A +AA
Sbjct: 1237 QYMRADQAA 1245
Score = 32.3 bits (72), Expect = 0.78
Identities = 63/256 (24%), Positives = 76/256 (29%), Gaps = 53/256 (20%)
Query: 170 PAPAGGKGEGGGKESAVLWKGAEG----GGEKGNRNMAAAPLGDPAREAAQAQTGLRRRR 225
P P G KGE G + V KG G GE+G P GD + + G R R
Sbjct: 100 PGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQG-------PRGDRGDKGEKGAPGPRGRD 152
Query: 226 PLELVP-RPALPSAPSPRIRCFLAPGRSRVGAALTEEQAAGEAAARGLWRRKPAPCPRGA 284
P P P P P PG +G + A G + K G
Sbjct: 153 GEPGTPGNPGPPGPPGP-------PGPPGLGGNFAAQMAGG-------FDEKAGGAQLGV 198
Query: 285 CAARLGGRGTGRARRAEFRVAGPRGVAEEAESGRGWRSWPSFSAVSGGGESPDPAGCSRG 344
+G G R GP+G + G P S G P P G
Sbjct: 199 MQGPMGPMGP-RGPPGPAGAPGPQGF----QGNPGEPGEPGVSGPMGPRGPPGPPGKPGD 253
Query: 345 KAAPEEPPRVARRAHENRLRTSARGL-------GPGDRRGDGRFGGGRGAEGA------- 390
+P + R ARG G RG G +G GA
Sbjct: 254 DGEAGKPGKAGERGPPG--PQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGES 311
Query: 391 ------GSGLPRGGRG 400
GS P G RG
Sbjct: 312 GSPGENGSPGPMGPRG 327
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 49.7 bits (117), Expect = 5e-06
Identities = 84/332 (25%), Positives = 107/332 (32%), Gaps = 51/332 (15%)
Query: 78 TASLSPAGRGAQRPPERFLPSSVSAGSAARTLRRGSEARKAQT--PRPAGVAQGSGGGGE 135
T + P G + + AGSA RG+ + +T P PAG A G G+
Sbjct: 719 TGPIGPPGPAGANGEKGEVGPPGPAGSAGA---RGAPGERGETGPPGPAGFAGPPGADGQ 775
Query: 136 RWLQG-LGPPRGRGLSTAPPPSSLRLLPPTPRPFPPAPAGGKGEGGGKESAVLWKGAEGG 194
+G G +G + AP P P+ P P P G G G + GA+G
Sbjct: 776 PGAKGEQGEAGQKGDAGAPGPQG-----PSGAPGPQGPTGVTGPKGAR-------GAQGP 823
Query: 195 GEKGNRNMAAAPLGDPAREAAQAQTGLRRRRPLELVPRPALPSAPSPRIRCFLAPGRSRV 254
AA +G P P P P P G+
Sbjct: 824 PGATGFPGAAGRVGPPGSNG-----------------NPGPPGPPGPS-------GKDGP 859
Query: 255 GAALTEEQAAGEAAARGLWRRKPAPCPRGACAARLGGRGTGRARRAEFRVAGPRGVAEEA 314
A + G A GL + PA P G +AG RG+
Sbjct: 860 KGARGDSGPPGRAGEPGL--QGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVG-L 916
Query: 315 ESGRGWRSWPSFSAVSG--GGESPDPAGCSRGKAAPEEPPRVARRAHENRLRTSARGLGP 372
RG R +P SG G + A RG P PP + A E S GP
Sbjct: 917 PGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGP 976
Query: 373 GDRRGDGRFGGGRGAEGA----GSGLPRGGRG 400
R G G RG GA G+ P G G
Sbjct: 977 PGRDGAAGVKGDRGETGAVGAPGAPGPPGSPG 1008
Score = 45.4 bits (106), Expect = 9e-05
Identities = 91/352 (25%), Positives = 117/352 (33%), Gaps = 63/352 (17%)
Query: 103 GSAARTLRRGSEARKAQ-----TPRPAGVAQGSGGGGERWLQGL-GPPRGRGLSTAP--- 153
G A T RG E + TP G A SG G + G G G++ AP
Sbjct: 306 GEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFP 365
Query: 154 -------PPSSLRLLPPTPRPFPPAPAGGKGEGG--GKESAVLWKGAEG-GGEKGNRNM- 202
P + L P + P AG KGE G G+ +GA G GE+G R
Sbjct: 366 GPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGAR 425
Query: 203 ----AAAPLGDPAREAAQAQTGLRRRRPLELVPRPALPSAPSPRIRCFLAPGRSRVGAAL 258
P+G P A G + L AP R LA + G
Sbjct: 426 GEPGGVGPIGPPGERGAPGNRGFPGQDGLA-----GPKGAPGERGPSGLAGPKGANGDPG 480
Query: 259 TEEQAAGEAAARGLWRRKPAPCPRGACA--------ARLGGRGT--GRARRAEFRVAGPR 308
+ G ARGL R P+G R G G R + GP+
Sbjct: 481 RPGEP-GLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPK 539
Query: 309 GV-AEEAESGR-------GWRSWPSFSAVSGGGESPDPAGCS--------------RGKA 346
G E ++G G R P +G P PAG + +G
Sbjct: 540 GANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLP 599
Query: 347 APEEPPRVARRAHENRLRTSARGLGPGDRRGDGRFGGGRGAEGA-GSGLPRG 397
P PP + + + A G RG+ F G RG+ GA G PRG
Sbjct: 600 GPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRG 651
Score = 39.3 bits (90), Expect = 0.006
Identities = 80/300 (26%), Positives = 98/300 (32%), Gaps = 49/300 (16%)
Query: 123 PAGVAQGSGGGGERWLQGLGPPRGRGLS--TAPPPSSLRLLPPTPRPFPPAPAGGKGEGG 180
P G G G QGL PRG + T P + P PP G GE G
Sbjct: 628 PRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERG 687
Query: 181 --------GKESAVLWKGAEGG-GEKGNRNMAAAPLGDPAREAAQAQTGLRRRRPLELVP 231
G V KG EG G+ G R + P+G P A + G E+ P
Sbjct: 688 AAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTG-PIGPPGPAGANGEKG-------EVGP 739
Query: 232 RPALPSA---PSPRIRCFLAP----GRSRVGAALTEEQAAGEAAARGLWRRKPAPCPRGA 284
SA +P R P G + A + A GE G AP P+G
Sbjct: 740 PGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGP 799
Query: 285 CAARLGGRGTGRARRAEFRVAGPRGVAEEAESGRGWRSWPSFSAVSGGGESPDPAGCSRG 344
A TG V GP+G RG + P + G P G S G
Sbjct: 800 SGAPGPQGPTG--------VTGPKG-------ARGAQGPPGATGFPGAAGRVGPPG-SNG 843
Query: 345 KAAPEEPPRVARRAHENRLRTSARGLGPGDRRGDGRFGGGRGAEG----AGSGLPRGGRG 400
P PP + + R + GP R G+ G G G G P G G
Sbjct: 844 NPGPPGPPGPSGKDGPKGARGDS---GPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEG 900
Score = 38.5 bits (88), Expect = 0.011
Identities = 77/301 (25%), Positives = 94/301 (31%), Gaps = 66/301 (21%)
Query: 123 PAGVAQGSGGGGERWLQGLGPPRGRGLSTAPPPSSLRLLPPTPRPFPPAPAGGKGEGGGK 182
PAG G G++ +G PRGR P + P P P PP P G G GG
Sbjct: 58 PAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGN------PGP-PGPPGPPGPPGLGG-- 108
Query: 183 ESAVLWKGAEGGGEKGNRNMAAAPLGDPAREAAQAQTGLRRRRPLELVPR--PALPSAPS 240
N AA G +A AQ G+ + + PR P AP
Sbjct: 109 ------------------NFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPG 150
Query: 241 PRIRCFLAPGRSRVGAALTEEQAAGEAAARGLWRRKPAPCPRGACAARLGGRGTGRARRA 300
P+ G E +G RG P P + G G +
Sbjct: 151 PQ-------GFQGNPGEPGEPGVSGPMGPRG----PPGPPGKPGDDGEAGKPG----KAG 195
Query: 301 EFRVAGPRGV-----AEEAESGRGWRSWPSFSAVSGGGESPDPAGCSRGKAAPEEP-PRV 354
E GP+G +G R +P G +P G S P P
Sbjct: 196 ERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMG 255
Query: 355 ARRAHENRLRTSARGLGPGDRRGDGRFG-----------GGRGAEGA----GSGLPRGGR 399
R R RT G G R DG+ G GG G GA G P G R
Sbjct: 256 PRGLPGERGRTGPAG-AAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGAR 314
Query: 400 G 400
G
Sbjct: 315 G 315
Score = 38.5 bits (88), Expect = 0.011
Identities = 51/189 (26%), Positives = 65/189 (34%), Gaps = 18/189 (9%)
Query: 87 GAQRPPERFLPSSVSAGSAARTLRRGSEARKAQTPRPAGVAQGSGGGGERWLQGLGPPRG 146
GA PP S G A T ++G +A P G SG G R +QG PRG
Sbjct: 999 GAPGPPG-------SPGPAGPTGKQGDRG-EAGAQGPMGP---SGPAGARGIQGPQGPRG 1047
Query: 147 -RGLSTAPPPSSLR----LLPPTPRPFPPAPAGGKGEGG--GKESAVLWKGAEGGGEKGN 199
+G + P L+ P PP P+G +G G G G G K
Sbjct: 1048 DKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDG 1107
Query: 200 RNMAAAPLGDPAREAAQAQTGLRRRRPLELVPRPALPSAPSPRIRCFLAPGRSRVGAALT 259
N P+G P +TG P P P P + F G G
Sbjct: 1108 ANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGPREKGPDPL 1167
Query: 260 EEQAAGEAA 268
+ A +AA
Sbjct: 1168 QYMRADQAA 1176
Score = 32.3 bits (72), Expect = 0.78
Identities = 63/256 (24%), Positives = 76/256 (29%), Gaps = 53/256 (20%)
Query: 170 PAPAGGKGEGGGKESAVLWKGAEG----GGEKGNRNMAAAPLGDPAREAAQAQTGLRRRR 225
P P G KGE G + V KG G GE+G P GD + + G R R
Sbjct: 31 PGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQG-------PRGDRGDKGEKGAPGPRGRD 83
Query: 226 PLELVP-RPALPSAPSPRIRCFLAPGRSRVGAALTEEQAAGEAAARGLWRRKPAPCPRGA 284
P P P P P PG +G + A G + K G
Sbjct: 84 GEPGTPGNPGPPGPPGP-------PGPPGLGGNFAAQMAGG-------FDEKAGGAQLGV 129
Query: 285 CAARLGGRGTGRARRAEFRVAGPRGVAEEAESGRGWRSWPSFSAVSGGGESPDPAGCSRG 344
+G G R GP+G + G P S G P P G
Sbjct: 130 MQGPMGPMGP-RGPPGPAGAPGPQGF----QGNPGEPGEPGVSGPMGPRGPPGPPGKPGD 184
Query: 345 KAAPEEPPRVARRAHENRLRTSARGL-------GPGDRRGDGRFGGGRGAEGA------- 390
+P + R ARG G RG G +G GA
Sbjct: 185 DGEAGKPGKAGERGPPG--PQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGES 242
Query: 391 ------GSGLPRGGRG 400
GS P G RG
Sbjct: 243 GSPGENGSPGPMGPRG 258
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 49.3 bits (116), Expect = 6e-06
Identities = 93/344 (27%), Positives = 119/344 (34%), Gaps = 73/344 (21%)
Query: 43 VLSDLQPLGITFPVFENSERSSRHL-PQAKAINPHHTASLSP-----AGRGAQ---RPPE 93
V +D +P G P + +S + P++KA P A+ P RG RP
Sbjct: 867 VFADEEPSGPRGPSSGHPLKSKAGVTPESKAPPPLPAATPDPQTPRPGDRGCPARGRPKT 926
Query: 94 RFL---PSSVSAGSAARTLRRGSEARKAQTPRPAG-VAQGSGGGGERWLQGLGPPRGRGL 149
R L P+ A S R RRG + + + +G A+GSG GG GL P R GL
Sbjct: 927 RSLGLAPTEADAPSQGRQQRRGKQLKLFRKDLDSGGAAEGSGSGGGGRASGLRPRRNDGL 986
Query: 150 STAPPPSSLRLLPPTPRPFPPAPAGGKGEGGGKESAVLWKGAEGGGEKGNRNMAAAPLGD 209
PPP P PR P + R AA L +
Sbjct: 987 GERPPPR-----PRRPRTQAPG---------------------SRADPAPRVPRAAALPE 1020
Query: 210 PAREAAQAQTGLRRRRPLELVPRPALPSAPSPRIRCFL--APGRSRVGAALTEEQAAGEA 267
R + RRRR LP PR R A G+ + + ++ E
Sbjct: 1021 ETRSS-------RRRR---------LPPRKDPRKRKARGGAWGKELILKIVQQKNRLREY 1064
Query: 268 AARGLWRRKPAPCPRGACAARLGGRGTGRARRAEFRVAG--------PRGVAEEAESGRG 319
P PRG G RG G R+ G PR A + G G
Sbjct: 1065 DFASESEEDEQPPPRG--PGFRGRRGRGEKRKEVELTQGPREDEPQKPRKAARQEAGGDG 1122
Query: 320 WRSWPSFSAVS--GGGESPDPAGCSR----GKAAPEEPPRVARR 357
+ P S G G SP G SR G AA E P+ A R
Sbjct: 1123 APANPEEPGGSRPGPGRSPQARGPSRSLETGAAAREGGPKCADR 1166
Score = 43.1 bits (100), Expect = 4e-04
Identities = 90/359 (25%), Positives = 121/359 (33%), Gaps = 60/359 (16%)
Query: 82 SPAGRGAQRPPERFLPSSVSAGSAARTLRRGSEARKAQTPRPAGVAQGSGGGGERWLQGL 141
S G G RPP R +S GS L SE + T +G ER + +
Sbjct: 3454 SAPGPGEDRPPPRGSSPILSEGSLPALLHLCSEVAPSTT-------KGWPETLERPVDPV 3506
Query: 142 GPP-RGRGLSTAPPPSSLRLLPPTPRPFPPAPAGGKGEGGGKESAVLWKGAEGGGEKGNR 200
P RG L P + PP+ PFP A A G+G+ + + G G
Sbjct: 3507 THPIRGCEL----PSNHQECPPPSLSPFPAALADGRGDCALDGALERPENEASPGSPGPL 3562
Query: 201 NMAAAPLG-DPAREAAQAQTGLRRRRPLELVPRPALPSAPSPRIRCFLAPGRSRVGAALT 259
A PLG R A+ Q +R PL + AP R RC AP + L
Sbjct: 3563 LQQALPLGASLPRPGARGQDAEGKRAPLVFSGK---RRAPGARGRC--APDHFQEDHLLQ 3617
Query: 260 EEQ------AAGEAAARGLWRR----KPAPC----------------------PRGACAA 287
+E+ E RG + + KPA C PR A +
Sbjct: 3618 KEKEVSSSHMVSEGGPRGTFHKGSATKPAGCQSSSKDRSAASTPSKALKFPVHPRKAVGS 3677
Query: 288 RLGGRGTGRARRAEFRVAGPRGVAEEAESGRGWRSWPSFSAVSGGGESPDPAG---CSRG 344
G R + A P+ + G G P +GGG P PA S
Sbjct: 3678 LAPGE-LARGTENGMKPATPKAKPGPSSQGSG---SPRPGTKTGGGSQPQPASGQLQSET 3733
Query: 345 KAAPEEPPRVARRAHENRL--RTSARGLGPGDRR-GDGRFGGGRGAEGAGSGLPRGGRG 400
P +P +R RL R A+ G R G+ G G + G + +G
Sbjct: 3734 ATTPAKPSFPSRSPAPERLPARAQAKSCTKGPREAGEQGPHGSLGPKEKGESSTKRKKG 3792
Score = 33.1 bits (74), Expect = 0.46
Identities = 39/156 (25%), Positives = 61/156 (39%), Gaps = 21/156 (13%)
Query: 210 PAREAAQAQTGLRRRRPLELVPRPALPSAPSPRIRCFLAPGRSRVGAALTEEQAAGEAAA 269
P A + G++ P + P P+ + SPR PG ++ G + A+G+ +
Sbjct: 3680 PGELARGTENGMKPATP-KAKPGPSSQGSGSPR------PG-TKTGGGSQPQPASGQLQS 3731
Query: 270 R-GLWRRKPAPCPRGACAARLGGRGTGRARRAEFRVAGPRGVAEEAESGR-GWRSWPSFS 327
KP+ R RL R +A+ GPR E+ G G + S
Sbjct: 3732 ETATTPAKPSFPSRSPAPERLPARA-----QAKSCTKGPREAGEQGPHGSLGPKEKGESS 3786
Query: 328 AVSGGGESPDPA------GCSRGKAAPEEPPRVARR 357
G+ P PA R +AP++PPR R+
Sbjct: 3787 TKRKKGQVPGPARSESVGSFGRAPSAPDKPPRTPRK 3822
Score = 32.7 bits (73), Expect = 0.60
Identities = 47/207 (22%), Positives = 63/207 (30%), Gaps = 40/207 (19%)
Query: 68 PQAKAINPHHTASLSPAGRGAQRPPERFL----------------PSSVSAGSAARTLRR 111
PQ++ PH P G + P P+ AG +
Sbjct: 2280 PQSRGAPPHTNPDRMPRGHSSYSPSNTARLGHREGQAVTAVPTEPPTLQGAGPDSPACLE 2339
Query: 112 GSEARKAQTPRPAGVAQGSGGGGERWLQGLGPPRGRGL--STAP-----------PPSSL 158
G ++ P G + G + + P G GL +TAP P S
Sbjct: 2340 GEMGTSSKEPEDPGTPETGRSGATKMPRVTCPSTGLGLGRTTAPSSTASDFQSDSPQSHR 2399
Query: 159 RLLPPTPRPFPPAPAGGKGEGGGKESAVLWKGAEGGGEKGNRNMAAAPLGDPAREAAQAQ 218
TP+ P P K G + E G KG AP G E A
Sbjct: 2400 NASHQTPQGDPLGPQDLKQRSRGYKKKPA--STENGQWKGQ-----APHGPVTCEVCAAS 2452
Query: 219 ----TGLRRRRPLELVPRPALPSAPSP 241
GL R + + P P P+ PSP
Sbjct: 2453 FRSGPGLSRHKARKHRPHPGAPAEPSP 2479
Score = 30.4 bits (67), Expect = 3.0
Identities = 40/150 (26%), Positives = 53/150 (35%), Gaps = 21/150 (14%)
Query: 73 INPHHTASLSPAGRGAQRPPERFLPSSV--SAGSAARTLRRGS------EARKAQTPRPA 124
++PH T SL P P E LPS +AGS +L S + ++Q P P
Sbjct: 570 VSPHGTPSLPPPRVVGASPSESPLPSPATNTAGSTCSSLSPMSSSPANPSSEESQLPGPL 629
Query: 125 GVAQGSGGGGERWLQGLGPPRGRGLSTAPPPSSLRLLPPTPRPFP----PAPAGGKGEGG 180
G + + P+ G S P P LP +P P P PA G G G
Sbjct: 630 GPS--------AFFHPPTHPQETG-SPFPSPEPPHSLPTHYQPEPAKAFPFPADGLGAEG 680
Query: 181 GKESAVLWKGAEGGGEKGNRNMAAAPLGDP 210
+ G E G + P P
Sbjct: 681 AFQCLEETPFPHEGPEVGRGGLQGFPRAPP 710
Score = 29.3 bits (64), Expect = 6.6
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 142 GPPRGRGLSTAPPPSSL-RLLPPTPRPFPPAPAG 174
GPP + PPP+ L +L PT P+P P G
Sbjct: 421 GPPDTELAAPGPPPARLPQLWDPTAAPYPTPPGG 454
>gi|169207312 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 48.5 bits (114), Expect = 1e-05
Identities = 78/300 (26%), Positives = 114/300 (38%), Gaps = 37/300 (12%)
Query: 97 PSSVS--AGSAARTLRRGSEARKAQTPRPAGVAQGSGGGGERWLQGLGPPRGRGLSTAPP 154
P+S+S A A+ ++ AR+AQ PRP + R GL GR L
Sbjct: 85 PASLSPRAALASAPGQKPQPARQAQLPRPVSGVRPP----PRGRVGLSQAPGRPLGACAR 140
Query: 155 PSSLRLLPPT-PRPFPPAPAGGKGEGG----GKESAVLWKGAEGGGE--------KGNRN 201
+RL+ P+ PRP P PA G G ++ +G G K +
Sbjct: 141 AKGIRLVNPSPPRPPEPIPASAAVTSGLTARGPNTSATPGPQKGRGSAERTNHIPKDKQR 200
Query: 202 MAAAPLGD-PAREAAQAQTGLRRRRPLELV---PRPALPSAPSPRIRCFLAPGRSRVGAA 257
+AA P + P + +GL P E + + P PR FL+ S
Sbjct: 201 VAAPPPPERPRVPFCRGSSGLSVPTPPEHAGGRRKKFTRTRPLPRTSSFLSEVPST--RP 258
Query: 258 LTEEQAAGEAAARGLWR--RKPAPCPRGACA-ARLGGRGTGRA---RRAEFRVAGPRGVA 311
L ++ A W R P+P P AC RLG RA + +GP
Sbjct: 259 LCATSSSHSAPLPFFWSPLRNPSPRPAPACGELRLGRLSPPRADTGGSSSGGCSGPDSKH 318
Query: 312 EEAESGRGWRSWPSFSAVSGGGESPDPAGCSRGKAAPEEPPRVARRAHENRLRTSARGLG 371
+ +WP+ +G +P+PA RG + PP +RR R+ +AR G
Sbjct: 319 RTLPAPPAPTAWPA----AGAPGAPNPAESRRGPGPAQGPP--SRRDEPRRVVIAARECG 372
>gi|239750650 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 48.5 bits (114), Expect = 1e-05
Identities = 78/300 (26%), Positives = 114/300 (38%), Gaps = 37/300 (12%)
Query: 97 PSSVS--AGSAARTLRRGSEARKAQTPRPAGVAQGSGGGGERWLQGLGPPRGRGLSTAPP 154
P+S+S A A+ ++ AR+AQ PRP + R GL GR L
Sbjct: 85 PASLSPRAALASAPGQKPQPARQAQLPRPVSGVRPP----PRGRVGLSQAPGRPLGACAR 140
Query: 155 PSSLRLLPPT-PRPFPPAPAGGKGEGG----GKESAVLWKGAEGGGE--------KGNRN 201
+RL+ P+ PRP P PA G G ++ +G G K +
Sbjct: 141 AKGIRLVNPSPPRPPEPIPASAAVTSGLTARGPNTSATPGPQKGRGSAERTNHIPKDKQR 200
Query: 202 MAAAPLGD-PAREAAQAQTGLRRRRPLELV---PRPALPSAPSPRIRCFLAPGRSRVGAA 257
+AA P + P + +GL P E + + P PR FL+ S
Sbjct: 201 VAAPPPPERPRVPFCRGSSGLSVPTPPEHAGGRRKKFTRTRPLPRTSSFLSEVPST--RP 258
Query: 258 LTEEQAAGEAAARGLWR--RKPAPCPRGACA-ARLGGRGTGRA---RRAEFRVAGPRGVA 311
L ++ A W R P+P P AC RLG RA + +GP
Sbjct: 259 LCATSSSHSAPLPFFWSPLRNPSPRPAPACGELRLGRLSPPRADTGGSSSGGCSGPDSKH 318
Query: 312 EEAESGRGWRSWPSFSAVSGGGESPDPAGCSRGKAAPEEPPRVARRAHENRLRTSARGLG 371
+ +WP+ +G +P+PA RG + PP +RR R+ +AR G
Sbjct: 319 RTLPAPPAPTAWPA----AGAPGAPNPAESRRGPGPAQGPP--SRRDEPRRVVIAARECG 372
>gi|89037350 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 48.5 bits (114), Expect = 1e-05
Identities = 78/300 (26%), Positives = 114/300 (38%), Gaps = 37/300 (12%)
Query: 97 PSSVS--AGSAARTLRRGSEARKAQTPRPAGVAQGSGGGGERWLQGLGPPRGRGLSTAPP 154
P+S+S A A+ ++ AR+AQ PRP + R GL GR L
Sbjct: 85 PASLSPRAALASAPGQKPQPARQAQLPRPVSGVRPP----PRGRVGLSQAPGRPLGACAR 140
Query: 155 PSSLRLLPPT-PRPFPPAPAGGKGEGG----GKESAVLWKGAEGGGE--------KGNRN 201
+RL+ P+ PRP P PA G G ++ +G G K +
Sbjct: 141 AKGIRLVNPSPPRPPEPIPASAAVTSGLTARGPNTSATPGPQKGRGSAERTNHIPKDKQR 200
Query: 202 MAAAPLGD-PAREAAQAQTGLRRRRPLELV---PRPALPSAPSPRIRCFLAPGRSRVGAA 257
+AA P + P + +GL P E + + P PR FL+ S
Sbjct: 201 VAAPPPPERPRVPFCRGSSGLSVPTPPEHAGGRRKKFTRTRPLPRTSSFLSEVPST--RP 258
Query: 258 LTEEQAAGEAAARGLWR--RKPAPCPRGACA-ARLGGRGTGRA---RRAEFRVAGPRGVA 311
L ++ A W R P+P P AC RLG RA + +GP
Sbjct: 259 LCATSSSHSAPLPFFWSPLRNPSPRPAPACGELRLGRLSPPRADTGGSSSGGCSGPDSKH 318
Query: 312 EEAESGRGWRSWPSFSAVSGGGESPDPAGCSRGKAAPEEPPRVARRAHENRLRTSARGLG 371
+ +WP+ +G +P+PA RG + PP +RR R+ +AR G
Sbjct: 319 RTLPAPPAPTAWPA----AGAPGAPNPAESRRGPGPAQGPP--SRRDEPRRVVIAARECG 372
>gi|122937321 UNC homeobox [Homo sapiens]
Length = 531
Score = 48.5 bits (114), Expect = 1e-05
Identities = 84/338 (24%), Positives = 107/338 (31%), Gaps = 38/338 (11%)
Query: 33 GRNLHVSPGTVLSD--LQPLGITFPVFENSERSSRHLPQAKAINPHHTASLSPAGRGAQR 90
GR H S T S + P I E E+ R H L GR
Sbjct: 171 GRPAHNSHPTTCSGEPMDPEEIARKELEKMEKKKRK---------HEKKLLKSQGRHLHS 221
Query: 91 PPERFLPSSVSAGSAARTLRRGSEARKAQTPRPAGVAQGSGGGGERWLQGLGPPRGRGLS 150
P L S+ S+ S + G + P PA G+ G P
Sbjct: 222 PGGLSLHSAPSSDSDSGG--GGLSPEPPEPPPPAAKGPGAHASGAAGTAPAPPGEPPAPG 279
Query: 151 TAPP---PSSLRLLPPTPRPFPPAPAGGKGEGGGKESAVLWKGAEGGGEKGNRNMAAAPL 207
T P PS P PRP PA G G A + +GA G + ++ +
Sbjct: 280 TCDPAFYPSQRSGAGPQPRPGRPADKDAASCGPGAAVAAVERGAAGLPKASPFSVESLLS 339
Query: 208 GDPAREAAQAQTGLRRRRPLELVPRPALPSAPSPRIRC-------------FLAPGRSRV 254
P R A + L+ P LP AP I FL P +
Sbjct: 340 DSPPRRKAASNAAAAAAAGLDFAP--GLPCAPRTLIGKGHFLLYPITQPLGFLVPQAALK 397
Query: 255 GAALTEEQAAGEAAARGLWRRKPAPCPRGACAARLGGRGTGRARRAEFRVAGPRGVAEEA 314
G A E A + PA GA + G + ARR+ VA P A
Sbjct: 398 GGAGLEPAPKDAPPAPAVPPAPPAQASFGAFSGPGGAPDSAFARRSPDAVASP---GAPA 454
Query: 315 ESGRGWRSWPSFSAVSGGGESPDPAGCSRGKAAPEEPP 352
+ +R S +A GGG A G A P PP
Sbjct: 455 PAPAPFRDLASAAATEGGGGDCADA----GTAGPAPPP 488
Score = 34.7 bits (78), Expect = 0.16
Identities = 35/102 (34%), Positives = 39/102 (38%), Gaps = 11/102 (10%)
Query: 146 GRGLSTAPPPSSLRLLPPTPR--PFPPAPAGG---KGEGGGKESAVLWKGAEGGGEKGNR 200
G GL AP + PP P P PPA A G GG +SA + + G
Sbjct: 399 GAGLEPAPKDA-----PPAPAVPPAPPAQASFGAFSGPGGAPDSAFARRSPDAVASPGAP 453
Query: 201 NMAAAPLGDPAREAAQAQTGLRRRRPLELVPRPALPSAPSPR 242
A AP D A AA G P P P APSPR
Sbjct: 454 APAPAPFRDLASAAATEGGGGDCADAGTAGPAPP-PPAPSPR 494
Score = 30.4 bits (67), Expect = 3.0
Identities = 40/135 (29%), Positives = 50/135 (37%), Gaps = 25/135 (18%)
Query: 48 QPLGITFPVFE-----NSERSSRHLPQAKAINPHHTASLSPAGRGAQRPPERFLPSSVSA 102
QPLG P E + + P A A+ P A + A GA P S+ +
Sbjct: 385 QPLGFLVPQAALKGGAGLEPAPKDAPPAPAVPP---APPAQASFGAFSGPGGAPDSAFAR 441
Query: 103 GSAARTLRRGSEARKAQTPRP----AGVAQGSGGGGERWLQGLGPPRGRGLSTAPPPSSL 158
S G+ A P P A A GGGG+ G P APPP +
Sbjct: 442 RSPDAVASPGAPA---PAPAPFRDLASAAATEGGGGDCADAGTAGP-------APPPPAP 491
Query: 159 RLLPPTPRPFPPAPA 173
P P P PP+PA
Sbjct: 492 S---PRPGPRPPSPA 503
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 48.1 bits (113), Expect = 1e-05
Identities = 94/369 (25%), Positives = 115/369 (31%), Gaps = 57/369 (15%)
Query: 47 LQPLGITFPVFENSERSSRHL--PQAKAINPHHTASLSPAGRGAQRPPERFLPSSVSAGS 104
L P G P E E R L P NP P G P+ G
Sbjct: 803 LGPPGPAGPTGEKGEPGPRGLVGPPGSRGNPGSRGENGPTGAVGFAGPQGPDGQPGVKGE 862
Query: 105 AARTLRRGSEARKAQTPRPAGVAQGSGGGGERWLQGLGPPRGRGLSTAPPPSSLRLLPPT 164
++G A +P P G+A G G + GL RG T PP +
Sbjct: 863 PGEPGQKGD----AGSPGPQGLAGSPGPHGPNGVPGLKGGRG----TQGPPGATGFPGSA 914
Query: 165 PRPFPPAPAGGKGEGG-----GKESAVLWKGAEGG-GEKGNRNMAAAP-----------L 207
R PP PAG G G GKE +G G G G+R A P
Sbjct: 915 GRVGPPGPAGAPGPAGPLGEPGKEGPPGLRGDPGSHGRVGDRGPAGPPGGPGDKGDPGED 974
Query: 208 GDPAREAAQAQTGLRRRRPLELVP----RPALPSAPSPRIRCFLAPGRSRVGAALTEEQA 263
G P + G +R + +P +P P P PG+ A ++
Sbjct: 975 GQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPA----GTPGKVGPTGATGDKGP 1030
Query: 264 AGEAAARGLWRRKPAPCPRG-ACAARLGGRGTGRARRAEFRVAGPRGVAEEAESGRGWRS 322
G G P P G A GR R + GP G+ +G
Sbjct: 1031 PGPVGPPGSNGPVGEPGPEGPAGNDGTPGRDGAVGERGDRGDPGPAGL----PGSQGAPG 1086
Query: 323 WPS-FSAVSGGGESPDPAGCSRGKAAPEEPPRVARRAHENRLRTSARGL-GPGDRRGDGR 380
P A G+ DP G P PP R RGL GP RGD
Sbjct: 1087 TPGPVGAPGDAGQRGDP-----GSRGPIGPPG----------RAGKRGLPGPQGPRGDKG 1131
Query: 381 FGGGRGAEG 389
G RG G
Sbjct: 1132 DHGDRGDRG 1140
Score = 43.1 bits (100), Expect = 4e-04
Identities = 78/299 (26%), Positives = 104/299 (34%), Gaps = 50/299 (16%)
Query: 114 EARKAQTPRPAGVAQGSGGGGERWLQGLGPPRGRGLSTAPPPSSLRLLPPTPRPFP---- 169
EA P P G+ G GE +G PRG + PP P R FP
Sbjct: 478 EAGPKGEPGPHGIQGPIGPPGEEGKRG---PRGDPGTVGPPGPVGERGAPGNRGFPGSDG 534
Query: 170 -PAPAGGKGEGGGKESAVLWKGAEGGGEKGNRNMAAAPLGDPAREAAQAQTGLRRRRPLE 228
P P G +GE G S+ G KG++ P G+P A+ TG
Sbjct: 535 LPGPKGAQGERGPVGSS---------GPKGSQGDPGRP-GEPGLPGARGLTG-------- 576
Query: 229 LVPRPALPSAPSPRIRCFLAPGRSRVGAALTEEQAAGEAAARGLWRRKPAPCPRGACAAR 288
P + P ++ APG G+ + GL P P+G+
Sbjct: 577 ---NPGV-QGPEGKLGPLGAPGEDGRPGPPGSIGIRGQPGSMGL------PGPKGSS--- 623
Query: 289 LGGRGT-GRARRAEFRVAGPRGV-AEEAESGRGWRSWPSFSAVSGGGESPDPAGCSRGKA 346
G G G A A V G RG ++ E G P A G + P +G
Sbjct: 624 -GDPGKPGEAGNAG--VPGQRGAPGKDGEVGPSGPVGPPGLAGERGEQGPPGPTGFQGLP 680
Query: 347 APEEPPRVARRAHENRLRTSARGLGPGDRRGDGRFGGGRGAEGAGSGLP-----RGGRG 400
P PP + + + +GP RG+ G RG G +GLP GG G
Sbjct: 681 GPPGPPGEGGKPGDQGVPGDPGAVGPLGPRGERGNPGERGEPGI-TGLPGEKGMAGGHG 738
Score = 33.1 bits (74), Expect = 0.46
Identities = 65/277 (23%), Positives = 84/277 (30%), Gaps = 59/277 (21%)
Query: 123 PAGVAQGSGGGGERWLQGLGPPRGRGLSTAPPPSSLRLLPPTPRPFP--PAPAGGKGEGG 180
P G+ SG G ++G P G P PP P P P G G G
Sbjct: 370 PLGIPGSSGFPGNPGMKGEAGPTGARGPEGPQGQRGETGPPGPVGSPGLPGAIGTDGTPG 429
Query: 181 GKESAVLWKGAEGGGEKGNRNMAAAPLGDPAREAAQAQTGLRRRRPLELVPRPALPSAPS 240
KG G +A P G P + + G+R +P P P
Sbjct: 430 A-------KGPTGSPGTSGPPGSAGPPGSPGPQGSTGPQGIR--------GQPGDPGVPG 474
Query: 241 PRIRCFLAPGRSRVGAALTEEQAAGEAAARGLWRRKPAPCPRGACAARLG--GRGTGRAR 298
+ GEA +G P P G +G G R
Sbjct: 475 FK----------------------GEAGPKG------EPGPHG-IQGPIGPPGEEGKRGP 505
Query: 299 RAEFRVAGPRGVAEE--AESGRGWRSWPSFSAVSGGGESPDPAGCSRGKAAPEEPPRVAR 356
R + GP G E A RG+ G P G S K + +P R
Sbjct: 506 RGDPGTVGPPGPVGERGAPGNRGFPGSDGLPGPKGAQGERGPVGSSGPKGSQGDPGRPGE 565
Query: 357 RAHENRLRTSARGL--GPGDRRGDGRFG--GGRGAEG 389
ARGL PG + +G+ G G G +G
Sbjct: 566 PG-----LPGARGLTGNPGVQGPEGKLGPLGAPGEDG 597
Score = 33.1 bits (74), Expect = 0.46
Identities = 75/295 (25%), Positives = 93/295 (31%), Gaps = 66/295 (22%)
Query: 120 TPRPAGVAQGSGGGGERWLQGLGPPRG-------RGLSTAPPPSSLRLLP-PTPRPFPPA 171
TP G G GER + G P+G +G R LP P P P
Sbjct: 751 TPGDTGPPGLQGMPGERGIAGTPGPKGDRGGIGEKGAEGTAGNDGARGLPGPLGPPGPAG 810
Query: 172 PAGGKGEGGGKESAVLWKGAEGGGEKGNRNMAAAPLGDPAREAAQAQTGLRRRRPLELVP 231
P G KGE G + V G+ G N +G + Q G++
Sbjct: 811 PTGEKGEPGPR-GLVGPPGSRGNPGSRGENGPTGAVGFAGPQGPDGQPGVKGE------- 862
Query: 232 RPALPSAPSPRIRCFLAPGRSRVGAALTEEQAAGEAAARGLWRRKPAPCPRGACAARLGG 291
P P ++ AG +GL P P GG
Sbjct: 863 ----PGEPG-------------------QKGDAGSPGPQGL-AGSPGPHGPNGVPGLKGG 898
Query: 292 RGTGRARRAEFRVAGPRGVAEEAESGRGWRSWPSFSAVSGGGESPDPAGCSRGKAAPEEP 351
RGT GP G G R P G +P PAG G+ E P
Sbjct: 899 RGT----------QGPPGAT--GFPGSAGRVGP-----PGPAGAPGPAG-PLGEPGKEGP 940
Query: 352 PRVARRAHENRLRTSARGL-----GPGDRRGDGRFGGGRGAEG-AGSGLPRGGRG 400
P + R + R RG GPGD +GD G G +G G G RG
Sbjct: 941 PGL-RGDPGSHGRVGDRGPAGPPGGPGD-KGDPGEDGQPGPDGPPGPAGTTGQRG 993
Score = 32.3 bits (72), Expect = 0.78
Identities = 81/333 (24%), Positives = 108/333 (32%), Gaps = 47/333 (14%)
Query: 91 PPERFLP-SSVSAGSAARTLRRGSEARKAQT------------PRPAGVAQGSGGGGERW 137
PP P S + G RG + +K + P PAG G GER
Sbjct: 88 PPGECCPVCSQTPGGGNTNFGRGRKGQKGEPGLVPVVTGIRGRPGPAGPPGSQGPRGERG 147
Query: 138 LQGLGPPRG-RGLSTAP-PPSSLRLLPPTPRPFPPAPAGGKGEGGGKESAVLWKGAEGGG 195
+G PRG +G+ P P P P P P G + A L + + G
Sbjct: 148 PKGRPGPRGPQGIDGEPGVPGQPGAPGPPGHPSHPGP-DGLSRPFSAQMAGLDEKSGLGS 206
Query: 196 EKGNRNMAAAPLGDPAREAAQAQTGLRRRRPLELVPRPALPSAPSPRIRCFLAPGRSRVG 255
+ G + P+G + Q Q G P P P P + P SR
Sbjct: 207 QVGLMPGSVGPVGPRGPQGLQGQQG-----GAGPTGPPGEPGDPGP-----MGPIGSR-- 254
Query: 256 AALTEEQAAGEAAARGLWRRKPAPCPRGACAARLGGRGTG--------RARRAEFRVAGP 307
E G+ G R P G A G RG + R + GP
Sbjct: 255 ---GPEGPPGKPGEDGEPGRNGNPGEVG-FAGSPGARGFPGAPGLPGLKGHRGHKGLEGP 310
Query: 308 RGVAEEAESGRGWRSWPSFSAVSGGGESPDPAGCSRGKAAPEEPPRVARRAHENRLRTSA 367
+G E G + P+ + G P RG+ P+ P R AH +
Sbjct: 311 KG--EVGAPGSKGEAGPTGPMGAMGPLGPRGMPGERGRLGPQGAPG-QRGAH--GMPGKP 365
Query: 368 RGLGPGDRRGDGRFGGGRGAEGAGSGLPRGGRG 400
+GP G F G G +G P G RG
Sbjct: 366 GPMGPLGIPGSSGFPGNPGMKGEAG--PTGARG 396
>gi|239750121 PREDICTED: hypothetical protein XP_002347280 [Homo
sapiens]
Length = 402
Score = 47.8 bits (112), Expect = 2e-05
Identities = 83/307 (27%), Positives = 102/307 (33%), Gaps = 58/307 (18%)
Query: 94 RFLPSSVSAGSAARTLRRGSEARKAQTPRPAGVAQGSGGGGERWLQGLGPP----RGRGL 149
R LPS VS R RR + + + G GG GLG P GL
Sbjct: 39 RSLPS-VSGPVRGRAERRPARGKHVRGGGVGGCRDSRAGGSHAAPSGLGVPGDSESALGL 97
Query: 150 STAPPPSSLRL---LPPTPRPFPPA--------------PAGGKGEGGGKESAVLWKGAE 192
PP SLR+ L PR P A PA G + W+ +
Sbjct: 98 LEPGPPKSLRISVTLGQAPRAGPSAASSAAAGKTPPSRVPAEPSSRRGASKRRESWR-TD 156
Query: 193 GGGEKGNRNMAAAPLG-----DPAREAAQAQTGLRRRRPLELVPRPALPSAPSPRIRCFL 247
G + R A A G D RE + R L P ++ S+ SP
Sbjct: 157 GERLRSGRGCAGAARGPDASLDTRREGWPRAAVVGRHEARRLKPGVSVSSSLSP------ 210
Query: 248 APGRSRVGAALTEEQAAGEAAARGLWRRKPAPCPRGACAARLGGRGTGRARRAEFRVAGP 307
G L + E RG RR P P P A A R GR A F +
Sbjct: 211 -------GPPLQRSSSLNETL-RG--RRPPGPAPAAAGATRGTAAPPGRDPSAWFLDS-- 258
Query: 308 RGVAEEAESGRGWRSWPSFSA--------VSGGGESPDPAGCSRGKAAPEEPPRVARRAH 359
A + RSW F A +GGG S G G+A E PR R +
Sbjct: 259 ---ASACPTPLAARSWHPFVANKLCGRGKGAGGGASRPKEGVGSGRARAWE-PRGGRESG 314
Query: 360 ENRLRTS 366
+R R S
Sbjct: 315 RSRRRKS 321
>gi|239741896 PREDICTED: hypothetical protein XP_002342335 [Homo
sapiens]
Length = 347
Score = 47.8 bits (112), Expect = 2e-05
Identities = 45/163 (27%), Positives = 62/163 (38%), Gaps = 11/163 (6%)
Query: 248 APGRSRVGAALTEEQAAGEAAARGLWRRKPAPCPRGACAARLGGRGT----------GRA 297
+P R GA E Q+ + R++ PR GRG R
Sbjct: 125 SPEPCRRGAQSMEPQSRAWESQPADGRKQSREAPRSGYEGDGSGRGCRDSGATYPAGARR 184
Query: 298 RRAEFRVAGPRGVAEEAESGRGWRSWPSFSAVSGGGESPDPAGC-SRGKAAPEEPPRVAR 356
AE GP+ + E+ SG R P+ +A S + P C G+ AP PP AR
Sbjct: 185 SLAEAERVGPKPLPEQERSGASGRCLPAPAAFSAAAPARRPPACLPEGEDAPVAPPSSAR 244
Query: 357 RAHENRLRTSARGLGPGDRRGDGRFGGGRGAEGAGSGLPRGGR 399
A + L + L +RG G G G+ +G RG R
Sbjct: 245 PALPSFLLRPSGYLAARRQRGPGSGAAETGFRGSCAGCGRGLR 287
Score = 30.0 bits (66), Expect = 3.9
Identities = 39/118 (33%), Positives = 48/118 (40%), Gaps = 12/118 (10%)
Query: 279 PCPRGACAARLGGRGTGRARRAEFRVAGPRGVAEEAESGRGWRSWPSFSAVSGG---GES 335
P P+G A L GRG + G G E S +RS P F+ S S
Sbjct: 60 PLPKGN-ALLLQGRGY-----TTHPLHGSDGEPETCPSLSPFRSTPGFNRFSLEPTLARS 113
Query: 336 PDPAGCSRGKAAPEEPPRVARRAHENRLRTSARGLGPGDRRGDGRFGGGRGAEGAGSG 393
AG G+A+PE P R ++ E + R A P D R R G EG GSG
Sbjct: 114 FTHAGARAGRASPE-PCRRGAQSMEPQSR--AWESQPADGRKQSREAPRSGYEGDGSG 168
>gi|239741753 PREDICTED: hypothetical protein [Homo sapiens]
Length = 274
Score = 47.4 bits (111), Expect = 2e-05
Identities = 77/267 (28%), Positives = 94/267 (35%), Gaps = 64/267 (23%)
Query: 58 ENSERSSRHLPQAKAINPHHTASLSPAGR--GAQRPPERFLPSSVSAGSAARTLRR---- 111
E E+SS L +A + A AGR G PP +TL+R
Sbjct: 21 EEEEKSS--LGRAAGVESRRRAGEGAAGRRDGGWGPP--------GGAGDHQTLQRASLL 70
Query: 112 -GSEARKAQTPRPAGVAQGSGGGG--ERWLQGLGPPRGRGLSTAPPPSSL-----RLLPP 163
G A K Q P+ A+G+ + L PP G GL PPP + R L P
Sbjct: 71 PGGSADKDQEREPSLAARGTAPPAPPRQCLPTPCPPLGHGLRPRPPPGTPPPRCPRTLAP 130
Query: 164 TPRPFPPAPAGGKGEGG--GKESAVLWKGAEGGGEKGNRNMAAAPLGDPAREAAQAQTGL 221
PR PAP G GK +A + G + R+ + P AQT L
Sbjct: 131 GPRGLFPAPPPAPARTGPAGKAAADRGRPGPAAGRRVRRSPSFPPF-------LLAQTRL 183
Query: 222 RRRRPLELVPRPALPSAPSPRIRCFLAPGRSRVGAALTEEQAAGEAAARGLWRRKPAPCP 281
R PL L L G R+G E+ A C
Sbjct: 184 GRTGPLAL-------------CLLLLLHGAMRLGGGSREKLA----------------CG 214
Query: 282 RGACAARLGGRGTGRARRAEFRVAGPR 308
R AAR GRG G RRAE AG R
Sbjct: 215 RAGRAART-GRGEG-GRRAEEEAAGRR 239
Score = 38.1 bits (87), Expect = 0.014
Identities = 80/298 (26%), Positives = 97/298 (32%), Gaps = 72/298 (24%)
Query: 110 RRGSEARKAQTPRPAGVAQ----GSGGGGERWLQGLGPPRGRGLSTAPPPSSLRLLPPTP 165
+R E K+ R AGV G G G R G GPP G G +SL
Sbjct: 18 KREEEEEKSSLGRAAGVESRRRAGEGAAGRRD-GGWGPPGGAGDHQTLQRASL------- 69
Query: 166 RPFPPAPAGGKGEGGGKESAVLWKG-AEGGGEKGNRNMAAAPLGDPAREAAQAQTGLRRR 224
P G + +E ++ +G A + PLG GLR R
Sbjct: 70 -----LPGGSADKDQEREPSLAARGTAPPAPPRQCLPTPCPPLGH----------GLRPR 114
Query: 225 RPLELVPRPALPSAPSPRIRCFLAPGRSRVGAALTEEQAAGEAAARGLWRRKP-APC--- 280
P P P PR LAPG RGL+ P AP
Sbjct: 115 PP---------PGTPPPRCPRTLAPG------------------PRGLFPAPPPAPARTG 147
Query: 281 PRGACAARLGGRGTGRARRAEFRVAGPRGVAEEAESGRGWRSWPS--------FSAVSGG 332
P G AA G G RR + P + + GR + P A+ G
Sbjct: 148 PAGKAAADRGRPGPAAGRRVRRSPSFPPFLLAQTRLGR---TGPLALCLLLLLHGAMRLG 204
Query: 333 GESPDPAGCSR-GKAAPEEPPRVARRAHENRLRTSARGLGPGDRRGDGRFGGGRGAEG 389
G S + C R G+AA RRA E R PG RG R GG G
Sbjct: 205 GGSREKLACGRAGRAARTGRGEGGRRAEEEAAGRRRR-RRPGRTRGIPRAAGGLSRAG 261
>gi|120587019 zinc finger protein 318 [Homo sapiens]
Length = 2279
Score = 47.4 bits (111), Expect = 2e-05
Identities = 49/172 (28%), Positives = 73/172 (42%), Gaps = 26/172 (15%)
Query: 56 VFENSERSS--RHLPQAKAINPHHTASLSPAGRGAQRPPERFLPSSVSAGSAARTLRRGS 113
++ +S RSS H P+ + S + G P R P +GS++RT
Sbjct: 1 MYRSSARSSVSSHRPKDDGGGGPRSGRSSGSSSG---PARRSSPPPPPSGSSSRT----- 52
Query: 114 EARKAQTPRPAGVAQGSGGGGERWLQGLGPPRGRGLSTAPPPSSLRLLPPTPRP---FPP 170
AR+ ++P SG G R PPRGR +S +PP + R P PR FPP
Sbjct: 53 PARRPRSP--------SGHRGRR--ASPSPPRGRRVSPSPPRAR-RGSPSPPRGRRLFPP 101
Query: 171 APAGGKGEGGGKESAVLWKGAEGG--GEKGNRNMAAAPLGDPAREAAQAQTG 220
PAG +G G+ A + G G+ G+R + D ++ + G
Sbjct: 102 GPAGFRGSSRGESRADYARDGRGDHPGDSGSRRRSPGLCSDSLEKSLRITVG 153
Score = 29.6 bits (65), Expect = 5.0
Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 91 PPERFLPSSVSAGSAARTLRRGSEARKAQTPRPAGVAQGSGGGGERWLQGLGPPRGRGLS 150
P FL S S+G+ A+ L E+ A P + + GG E L+G P L+
Sbjct: 1372 PLNTFL-SIKSSGTTAKPLPVVKES-SADLLLPPDIISKAFGGEEVILKG-SPEEKVVLA 1428
Query: 151 TAPPPSSL--RLLPPTPRPFPPAP 172
PS L ++LPP P P PP P
Sbjct: 1429 EKSEPSHLPEQILPPPPPPPPPPP 1452
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 47.0 bits (110), Expect = 3e-05
Identities = 96/351 (27%), Positives = 119/351 (33%), Gaps = 82/351 (23%)
Query: 68 PQAKAINPHHTASLSPAGRGAQRPPERFLPSSVSAGSAARTL-RRGSEARKAQTPRPAGV 126
P A +P H S G +Q P R+ A SAA + R RK + V
Sbjct: 1057 PTPGAPSPSHHGSAGGGGGSSQGPALRYFQLPPRAASAAMYVPARSGRGRKGPLVKQTKV 1116
Query: 127 AQGSGGGGERWLQGLGPPRGRGLSTAPPPSSLRLLPPTPRPFPPAPA------------- 173
GE P +G GL AP P+S P +P+P PPA A
Sbjct: 1117 E------GE-------PQKGGGLPPAPSPTS----PASPQP-PPAVAAPSEKNSIPIPTI 1158
Query: 174 ---------GGKGEGGGKESAVLWKGAE--GGGEKGNRNMAAAPLGDPAREAAQAQTGLR 222
G+ G A E GGG G + + AP P +
Sbjct: 1159 IIKAPSTSSSGRSSQGSSTEAEPPTQPEPTGGGGGGGSSPSPAPAMSPVPPSPSP----- 1213
Query: 223 RRRPLELVPRPALPSAPSPRIRCFLAPGRSRVGAALTEEQAAGEAAARG-LWRRKPAPCP 281
VP PA PS P+ + G + VGAA E EA R L+ A
Sbjct: 1214 -------VPTPASPSGPA-TLDFTSQFGAALVGAARREGGWQNEARRRSTLFLSTDAGDE 1265
Query: 282 RGACAARLGGRGTGRARRAEFR----------VAGPRGVAEEAESGRGWRSWPSFSAVSG 331
G GG GTG A R A P E A SG G+ + + S G
Sbjct: 1266 DGGD----GGLGTGAAPGPRLRHSKSIDEGMFSAEPYLRLESAGSGAGYGGYGAGSRAYG 1321
Query: 332 GGES---------PDP-AGCSRGKAA-PEEPPRVARRAHENRLRTSARGLG 371
GG P P GKA P P +A A E L+ S+ G G
Sbjct: 1322 GGGGSSAFTSFLPPRPLVHPLTGKALDPASPLGLALAARERALKESSEGGG 1372
Score = 30.0 bits (66), Expect = 3.9
Identities = 79/306 (25%), Positives = 104/306 (33%), Gaps = 60/306 (19%)
Query: 143 PPRGRGLSTAPPPS--SLRLLPPTPRPFPPAPA--GGKGEGGGKE--------------- 183
PPR L+ P PS R P+P P P+P+ G G GGG
Sbjct: 1036 PPR---LALGPQPSLRGWRGGGPSPTPGAPSPSHHGSAGGGGGSSQGPALRYFQLPPRAA 1092
Query: 184 SAVLWKGAEGG-GEKGNRNMAAAPLGDPAR----EAAQAQTGLRRRRPLELVPRPA-LPS 237
SA ++ A G G KG G+P + A + T +P V P+ S
Sbjct: 1093 SAAMYVPARSGRGRKGPLVKQTKVEGEPQKGGGLPPAPSPTSPASPQPPPAVAAPSEKNS 1152
Query: 238 APSPRIRCFLAP-----GRSRVGAAL-----TEEQAAGEAAARGLWRRKPAPC----PRG 283
P P I AP GRS G++ T+ + G G PAP P
Sbjct: 1153 IPIPTI-IIKAPSTSSSGRSSQGSSTEAEPPTQPEPTGGGGGGGS-SPSPAPAMSPVPPS 1210
Query: 284 ACAARLGGRGTGRARRAEFRVAGPRGVAEEAESGRGW-----RSWPSFSAVSGGGESPDP 338
+G A +F + A GW R F + G E
Sbjct: 1211 PSPVPTPASPSGPA-TLDFTSQFGAALVGAARREGGWQNEARRRSTLFLSTDAGDEDGGD 1269
Query: 339 AGCSRGKAAPEEPPRVARRAHEN--------RLRTSARGLGPGD-RRGDGRFGGGRGAEG 389
G G AAP R ++ E RL ++ G G G G +GGG G+
Sbjct: 1270 GGLGTG-AAPGPRLRHSKSIDEGMFSAEPYLRLESAGSGAGYGGYGAGSRAYGGGGGSSA 1328
Query: 390 AGSGLP 395
S LP
Sbjct: 1329 FTSFLP 1334
Score = 29.3 bits (64), Expect = 6.6
Identities = 34/115 (29%), Positives = 40/115 (34%), Gaps = 12/115 (10%)
Query: 140 GLGPPRGRGLSTAPPPSSLRLLPPTPRPFPPAPAGGKGEGGGKESAVLWKGAEGGGEKGN 199
G GPP G PPPS R +PP+P P A E G VL A +
Sbjct: 1507 GRGPPSEDGPGV-PPPSPRRSVPPSPTS-PRA-----SEENGLPLLVLPPPAPSVDVEDG 1559
Query: 200 RNMAAAPLGDPAR-----EAAQAQTGLRRRRPLELVPRPALPSAPSPRIRCFLAP 249
+ PL P E ++ PL P PA P P P AP
Sbjct: 1560 EFLFVEPLPPPLEFSNSFEKPESPLTPGPPHPLPDTPAPATPLPPVPPPAVAAAP 1614
>gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens]
Length = 694
Score = 46.6 bits (109), Expect = 4e-05
Identities = 42/147 (28%), Positives = 57/147 (38%), Gaps = 8/147 (5%)
Query: 40 PGTVLSDLQPLGITFPVFENSERSSRHLPQAKAINPHHTASLSPAGRGAQR--PPERFLP 97
P VL P+ T P SE ++ P+ A P H A G R P ++ P
Sbjct: 162 PKQVLPQPMPIKKTKPQQPVSEPAA---PEQPAPEPKHPARAPARGDSEDRRGPGQKTGP 218
Query: 98 SSVSA---GSAARTLRRGSEARKAQTPRPAGVAQGSGGGGERWLQGLGPPRGRGLSTAPP 154
SA G+ +RR SEAR + + R + SGG G+ G R + + P
Sbjct: 219 DPASAPGRGNYGPPVRRASEARMSSSSRDSESWDHSGGAGDSSRSPAGLRRANSVQASRP 278
Query: 155 PSSLRLLPPTPRPFPPAPAGGKGEGGG 181
P P+P P GG G G
Sbjct: 279 APGSVQSPAPPQPGQPGTPGGSRPGPG 305
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.134 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,984,723
Number of Sequences: 37866
Number of extensions: 1557860
Number of successful extensions: 13554
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 1320
Number of HSP's that attempted gapping in prelim test: 9195
Number of HSP's gapped (non-prelim): 4663
length of query: 400
length of database: 18,247,518
effective HSP length: 104
effective length of query: 296
effective length of database: 14,309,454
effective search space: 4235598384
effective search space used: 4235598384
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.