Guide to the Human Genome
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Name: LOC100294035 Sequence: fasta or formatted (183aa) NCBI GI: 239755029
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.8         18           2
 C cysteine            1.1          2           1
 D aspartate           2.2          4           1
 E glutamate           6.6         12           1
 F phenylalanine       2.7          5           1
 G glycine            12.0         22           4
 H histidine           4.4          8           2
 I isoleucine          4.4          8           2
 K lysine              2.2          4           1
 L leucine             8.2         15           1
 M methionine          1.1          2           1
 N asparagine          1.6          3           1
 P proline             8.7         16           2
 Q glutamine           4.4          8           1
 R arginine            8.7         16           2
 S serine             10.9         20           2
 T threonine           4.9          9           1
 V valine              4.4          8           1
 W tryptophan          1.6          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100291533          0.820   PREDICTED: hypothetical protein XP_002347080 
LOC100288002          0.820   PREDICTED: hypothetical protein XP_002342946 
ZNF469                0.040   zinc finger protein 469 
NFKBIL2               0.034   NF-kappa-B inhibitor-like protein 2 
MEPCE                 0.026   bin3, bicoid-interacting 3 
RBM15B                0.026   RNA binding motif protein 15B 
RPH3A                 0.026   rabphilin 3A homolog isoform 1 
RPH3A                 0.026   rabphilin 3A homolog isoform 2 
LOC651856             0.023   PREDICTED: similar to hCG2023245 
MBD6                  0.023   methyl-CpG binding domain protein 6 
LOC730236             0.023   PREDICTED: hypothetical protein 
LOC730236             0.023   PREDICTED: hypothetical protein 
LOC730236             0.023   PREDICTED: hypothetical protein 
ATN1                  0.023   atrophin-1 
ATN1                  0.023   atrophin-1 
COL13A1               0.023   alpha 1 type XIII collagen isoform 12 
COL13A1               0.023   alpha 1 type XIII collagen isoform 7 
SSBP4                 0.023   single stranded DNA binding protein 4 isoform a [Hom...
LOC100291627          0.023   PREDICTED: hypothetical protein XP_002345251 
LOC100289867          0.023   PREDICTED: hypothetical protein XP_002348034 
FLJ31945              0.023   PREDICTED: hypothetical protein 
LOC100288231          0.023   PREDICTED: hypothetical protein XP_002343737 
FLJ31945              0.023   PREDICTED: hypothetical protein 
MLL3                  0.023   myeloid/lymphoid or mixed-lineage leukemia 3 
PCLO                  0.023   piccolo isoform 2 
PCLO                  0.023   piccolo isoform 1 
LOC100292143          0.020   PREDICTED: hypothetical protein 
LOC100129036          0.020   PREDICTED: hypothetical protein 
LOC100129036          0.020   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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