Guide to the Human Genome
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Name: LOC645602 Sequence: fasta or formatted (414aa) NCBI GI: 169207312
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {414aa} PREDICTED: hypothetical protein
alt mRNA {414aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.4         43           2
 C cysteine            2.4         10           1
 D aspartate           1.9          8           1
 E glutamate           5.6         23           2
 F phenylalanine       1.4          6           2
 G glycine            10.1         42           2
 H histidine           1.7          7           1
 I isoleucine          1.7          7           1
 K lysine              3.1         13           2
 L leucine             6.8         28           1
 M methionine          0.2          1           1
 N asparagine          1.2          5           1
 P proline            17.6         73           4
 Q glutamine           2.4         10           1
 R arginine           13.0         54           2
 S serine             11.6         48           3
 T threonine           4.3         18           2
 V valine              3.4         14           2
 W tryptophan          1.0          4           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC645602             1.000   PREDICTED: hypothetical protein 
LOC645602             1.000   PREDICTED: hypothetical protein 
NACA                  0.074   nascent polypeptide-associated complex alpha subuni...
WIPF1                 0.061   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.061   WAS/WASL interacting protein family, member 1 
CASKIN2               0.048   cask-interacting protein 2 isoform b 
CASKIN2               0.048   cask-interacting protein 2 isoform a 
FLJ22184              0.047   PREDICTED: hypothetical protein LOC80164 
PRB2                  0.047   proline-rich protein BstNI subfamily 2 
PRB1                  0.044   proline-rich protein BstNI subfamily 1 isoform 1 pre...
FLJ37078              0.043   hypothetical protein LOC222183 
SHANK1                0.043   SH3 and multiple ankyrin repeat domains 1 
FLJ22184              0.042   PREDICTED: hypothetical protein FLJ22184 
LOC643355             0.042   PREDICTED: hypothetical protein 
MAP6                  0.042   microtubule-associated protein 6 isoform 2 
MAP6                  0.042   microtubule-associated protein 6 isoform 1 
FLJ22184              0.042   PREDICTED: hypothetical protein FLJ22184 
TAF4                  0.042   TBP-associated factor 4 
FMN2                  0.041   formin 2 
RERE                  0.038   atrophin-1 like protein isoform b 
RERE                  0.038   atrophin-1 like protein isoform a 
RERE                  0.038   atrophin-1 like protein isoform a 
PRB3                  0.038   proline-rich protein BstNI subfamily 3 precursor [H...
MBD6                  0.038   methyl-CpG binding domain protein 6 
RAPH1                 0.038   Ras association and pleckstrin homology domains 1 is...
DUSP8                 0.038   dual specificity phosphatase 8 
DACT3                 0.038   thymus expressed gene 3-like 
PRB4                  0.038   proline-rich protein BstNI subfamily 4 precursor [Ho...
SRRM1                 0.038   serine/arginine repetitive matrix 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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