Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100289284 Sequence: fasta or formatted (347aa) NCBI GI: 239741896
Description:

PREDICTED: hypothetical protein XP_002342335

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.4         43           3
 C cysteine            2.6          9           1
 D aspartate           1.7          6           1
 E glutamate           6.3         22           1
 F phenylalanine       3.2         11           1
 G glycine            13.3         46           2
 H histidine           2.6          9           1
 I isoleucine          1.2          4           1
 K lysine              2.0          7           1
 L leucine             9.2         32           4
 M methionine          0.6          2           1
 N asparagine          0.9          3           1
 P proline            12.1         42           2
 Q glutamine           3.5         12           1
 R arginine            9.8         34           2
 S serine              9.5         33           2
 T threonine           4.6         16           2
 V valine              1.7          6           1
 W tryptophan          1.2          4           1
 Y tyrosine            1.7          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342335 
LOC100291533          0.033   PREDICTED: hypothetical protein XP_002347080 
LOC100288002          0.033   PREDICTED: hypothetical protein XP_002342946 
LOC389813             0.032   similar to CG15216-PA 
COL1A2                0.029   alpha 2 type I collagen 
LOC100290946          0.029   PREDICTED: hypothetical protein XP_002347121 
LOC100288840          0.029   PREDICTED: hypothetical protein XP_002344246 
LOC100290023          0.029   PREDICTED: hypothetical protein XP_002348147 
LOC100290372          0.029   PREDICTED: hypothetical protein XP_002346788 
LOC100288606          0.029   PREDICTED: hypothetical protein XP_002342652 
OTUD7A                0.029   OTU domain containing 7A 
C10orf47              0.027   hypothetical protein LOC254427 
LOC100293604          0.027   PREDICTED: hypothetical protein 
LOC100289721          0.027   PREDICTED: hypothetical protein XP_002347280 
LOC100287837          0.027   PREDICTED: hypothetical protein XP_002343157 
PRB1                  0.027   proline-rich protein BstNI subfamily 1 isoform 2 pre...
LOC100293375          0.026   PREDICTED: hypothetical protein 
TAF4                  0.026   TBP-associated factor 4 
FLJ22184              0.026   PREDICTED: hypothetical protein LOC80164 
FLJ22184              0.024   PREDICTED: hypothetical protein FLJ22184 
CUX1                  0.024   cut-like homeobox 1 isoform a 
FOXE1                 0.024   forkhead box E1 
WTIP                  0.024   Wilms tumor 1 interacting protein 
BAT2                  0.023   HLA-B associated transcript-2 
LOC388906             0.023   PREDICTED: hypothetical protein 
FLJ22184              0.023   PREDICTED: hypothetical protein FLJ22184 
LOC388906             0.023   PREDICTED: hypothetical protein 
LOC388906             0.023   PREDICTED: hypothetical protein 
C1orf229              0.023   hypothetical protein LOC388759 
DDN                   0.021   dendrin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press