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Search of human proteins with 239743660
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743660 PREDICTED: hypothetical protein XP_002342926 [Homo
sapiens]
(329 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239743660 PREDICTED: hypothetical protein XP_002342926 [Homo ... 694 0.0
gi|239749521 PREDICTED: hypothetical protein XP_002347072 [Homo ... 270 1e-72
gi|239754965 PREDICTED: hypothetical protein [Homo sapiens] 264 9e-71
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 52 7e-07
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 51 2e-06
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 50 2e-06
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 50 2e-06
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 48 1e-05
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 48 1e-05
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 48 1e-05
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 48 1e-05
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 48 1e-05
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 47 2e-05
gi|19924099 synapsin I isoform Ia [Homo sapiens] 47 3e-05
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 46 4e-05
gi|239752280 PREDICTED: similar to family with sequence similari... 46 4e-05
gi|210032463 family with sequence similarity 48, member B2 [Homo... 46 4e-05
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 46 5e-05
gi|50511941 EMI domain containing 1 [Homo sapiens] 46 5e-05
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 45 7e-05
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 45 7e-05
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 45 7e-05
gi|113416879 PREDICTED: hypothetical protein [Homo sapiens] 45 7e-05
gi|53692189 adipocyte enhancer binding protein 1 precursor [Homo... 45 9e-05
gi|150170729 microtubule associated serine/threonine kinase 3 [H... 45 1e-04
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 44 2e-04
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 44 2e-04
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 44 2e-04
gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens] 44 3e-04
gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo... 44 3e-04
>gi|239743660 PREDICTED: hypothetical protein XP_002342926 [Homo
sapiens]
Length = 329
Score = 694 bits (1790), Expect = 0.0
Identities = 329/329 (100%), Positives = 329/329 (100%)
Query: 1 MNTDTQGEGSRVKESEIRVRDASTSQGTQGLPENHQLPGEAGQDPSLKPSQGGTALLADP 60
MNTDTQGEGSRVKESEIRVRDASTSQGTQGLPENHQLPGEAGQDPSLKPSQGGTALLADP
Sbjct: 1 MNTDTQGEGSRVKESEIRVRDASTSQGTQGLPENHQLPGEAGQDPSLKPSQGGTALLADP 60
Query: 61 PVSDFRPPQLLTCLGGPWCLCPLCSLQVEDPWLFSLLQPRDQLRLENQESCCVCGREDNS 120
PVSDFRPPQLLTCLGGPWCLCPLCSLQVEDPWLFSLLQPRDQLRLENQESCCVCGREDNS
Sbjct: 61 PVSDFRPPQLLTCLGGPWCLCPLCSLQVEDPWLFSLLQPRDQLRLENQESCCVCGREDNS 120
Query: 121 VSMTGSIPPGGRNGKKSLRMAASGPESGLWVEAPGHRHRPRTPWPPRAGSAGSCETRPNE 180
VSMTGSIPPGGRNGKKSLRMAASGPESGLWVEAPGHRHRPRTPWPPRAGSAGSCETRPNE
Sbjct: 121 VSMTGSIPPGGRNGKKSLRMAASGPESGLWVEAPGHRHRPRTPWPPRAGSAGSCETRPNE 180
Query: 181 AHLAPPRGRVAGLDHLPHQALKAPQSPRAFPPGGPGDAGTPMPKAGGLRKRPGITRTEGN 240
AHLAPPRGRVAGLDHLPHQALKAPQSPRAFPPGGPGDAGTPMPKAGGLRKRPGITRTEGN
Sbjct: 181 AHLAPPRGRVAGLDHLPHQALKAPQSPRAFPPGGPGDAGTPMPKAGGLRKRPGITRTEGN 240
Query: 241 PSPRPPRRLTLPEDHPRLANARRRRKRALATRVRPAPQTSGRPGPLGGPAISVVLSPASQ 300
PSPRPPRRLTLPEDHPRLANARRRRKRALATRVRPAPQTSGRPGPLGGPAISVVLSPASQ
Sbjct: 241 PSPRPPRRLTLPEDHPRLANARRRRKRALATRVRPAPQTSGRPGPLGGPAISVVLSPASQ 300
Query: 301 APEKGWSQSRGGARLGPEGQEPGRDQKPR 329
APEKGWSQSRGGARLGPEGQEPGRDQKPR
Sbjct: 301 APEKGWSQSRGGARLGPEGQEPGRDQKPR 329
>gi|239749521 PREDICTED: hypothetical protein XP_002347072 [Homo
sapiens]
Length = 184
Score = 270 bits (691), Expect = 1e-72
Identities = 129/137 (94%), Positives = 131/137 (95%)
Query: 1 MNTDTQGEGSRVKESEIRVRDASTSQGTQGLPENHQLPGEAGQDPSLKPSQGGTALLADP 60
MNTDTQGEGSRVKESEIRVRDASTSQGTQGLPENHQLPGEAGQDPSLKPSQGGTALLADP
Sbjct: 1 MNTDTQGEGSRVKESEIRVRDASTSQGTQGLPENHQLPGEAGQDPSLKPSQGGTALLADP 60
Query: 61 PVSDFRPPQLLTCLGGPWCLCPLCSLQVEDPWLFSLLQPRDQLRLENQESCCVCGREDNS 120
PVSDFRPPQLLTCLGGPWCLCPLCSLQVEDPWLFSLLQPRDQLRLENQESCCVCGREDNS
Sbjct: 61 PVSDFRPPQLLTCLGGPWCLCPLCSLQVEDPWLFSLLQPRDQLRLENQESCCVCGREDNS 120
Query: 121 VSMTGSIPPGGRNGKKS 137
VSMTGS P ++ K S
Sbjct: 121 VSMTGSDPVTKQSAKDS 137
>gi|239754965 PREDICTED: hypothetical protein [Homo sapiens]
Length = 213
Score = 264 bits (674), Expect = 9e-71
Identities = 148/245 (60%), Positives = 155/245 (63%), Gaps = 39/245 (15%)
Query: 1 MNTDTQGEGSRVKESEIRVRDASTSQGTQGLPENHQLPGEAGQDPSLKPSQGGTALLADP 60
MNTDTQGEGSRVKESEIRVRDASTSQGTQGLPENHQLPGEAGQDPSLKPSQGGTALLADP
Sbjct: 1 MNTDTQGEGSRVKESEIRVRDASTSQGTQGLPENHQLPGEAGQDPSLKPSQGGTALLADP 60
Query: 61 PVSDFRPPQLLTCLGGPWCLCPLCSLQVEDPWLFSLLQPRDQLRLENQESCCVCGREDNS 120
PVSDFRPPQLLTCLGGPWCLCPLCSLQVEDPWLFSLLQPRDQLRLENQESCCVCGREDNS
Sbjct: 61 PVSDFRPPQLLTCLGGPWCLCPLCSLQVEDPWLFSLLQPRDQLRLENQESCCVCGREDNS 120
Query: 121 VSMTGSIPPGGRNGKKSLRMAASGPESGLWVEAPGHRHRPRTPWPPRAGSAGSCETRPNE 180
T +AA+ SG+ E R PPRA + RP
Sbjct: 121 APDT---------------VAAT---SGVCGELRDSAKRS----PPRAAAGEGGWARP-- 156
Query: 181 AHLAPPRGRVAGLDHLPHQALKAPQSPRAFPPGGPGDAGTPMPKAGGLRKRPGITRTEGN 240
PP G P P FP PG G P + G ++ G
Sbjct: 157 ----PPTPGAQG-----------PAKPPRFPAWRPGGRGDPNAEGGRAKEATRDHSDRGQ 201
Query: 241 PSPRP 245
P P
Sbjct: 202 PESAP 206
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 52.0 bits (123), Expect = 7e-07
Identities = 49/184 (26%), Positives = 72/184 (39%), Gaps = 16/184 (8%)
Query: 124 TGSIPPGGRNGKKSLRMAASGPESGLWVEAPGHRHRPRTPWPPRAGSAGS--CETRPNEA 181
T PG + + R A+G E GL AP R RP T P ++ S+ S T P+ A
Sbjct: 155 TSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPA 214
Query: 182 HLAPPRGRVAGLDHLPHQALKAPQSPRAFPP-GGPGDAGTPMPKAGGLRKRPGITRTEGN 240
P GL ++L + +P + P GP GTP A + +P +
Sbjct: 215 ARRRPSAG-GGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRP 273
Query: 241 PSPRPPRRLTLPEDHPRLANARRRRKRALATRVRPAPQTSGRPGPLGGPAISVVLSPASQ 300
P PPR+ P P L++ P S P P P++ + SP +
Sbjct: 274 PQVTPPRKDAAPALGP------------LSSSPLATPSPSAPPSPSAPPSLQTLPSPPAT 321
Query: 301 APEK 304
P +
Sbjct: 322 PPSQ 325
Score = 38.1 bits (87), Expect = 0.011
Identities = 43/143 (30%), Positives = 55/143 (38%), Gaps = 30/143 (20%)
Query: 202 KAPQSPRAFPPGGPGDAGTPMPKAGGLRKRPGITRTEGNPSPRPPRRLTLPEDHPRLANA 261
+ P SPR PP P A + AG + ++P R G T+PE PR
Sbjct: 28 RPPGSPRPPPPVTPA-ALRVLGAAGAVGRKPLAERAGGIGGA------TIPESAPRAGPT 80
Query: 262 RRRRKRA--LATRVRPAPQTS-------------GRPGPLGGPAI------SVVLSPASQ 300
R R A R PA TS RPGPLG + +V A++
Sbjct: 81 RTSRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGPLGQKGLRISAEETVARGKATE 140
Query: 301 APEKGWSQSRGGARLGPEGQEPG 323
AP++ S GAR G PG
Sbjct: 141 APKR--SALSAGARRDTSGPTPG 161
Score = 34.7 bits (78), Expect = 0.12
Identities = 36/143 (25%), Positives = 49/143 (34%), Gaps = 8/143 (5%)
Query: 160 PRTPWPPRAGSAGSCETRPNEAHLAPPRGRVAGLDHLPHQALKAPQSPRAFPPGGPGDAG 219
P PP + S +T P+ P + + L L+A S PP P
Sbjct: 298 PSPSAPPSPSAPPSLQTLPSPPATPPSQATTS----LGSPTLQATHSFLPSPPLSP--LA 351
Query: 220 TPMPKAGGLRKRPGITRTEGNPSPRPPRRLTLPEDHPRLANARRRRKRALATRVRPAPQT 279
TP P+A P + P+ P L P P+ NA P+P
Sbjct: 352 TPPPQAPPALALPPLQAPPSPPASPPLSPLATPS--PQAPNALAVHLLQAPFSPPPSPPV 409
Query: 280 SGRPGPLGGPAISVVLSPASQAP 302
P P +S +P SQAP
Sbjct: 410 QAPFSPPASPPVSPSATPPSQAP 432
Score = 34.3 bits (77), Expect = 0.16
Identities = 42/152 (27%), Positives = 59/152 (38%), Gaps = 16/152 (10%)
Query: 160 PRTPWPPRAGSAGSCETRPNEAHLAPPRGRVAGLDHLPHQA--------LKAPQSPRAFP 211
P TP S GS + + L P ++ L P QA L+AP SP A P
Sbjct: 319 PATPPSQATTSLGSPTLQATHSFLPSPP--LSPLATPPPQAPPALALPPLQAPPSPPASP 376
Query: 212 PGGPGDAGTPMPKAGGLRKRPGITRTEGNPSPRPPRRLTL-PEDHPRLANARRRRKRALA 270
P P TP P+A + + +P P PP + P P ++ + +A
Sbjct: 377 PLSP--LATPSPQAPNALA-VHLLQAPFSPPPSPPVQAPFSPPASPPVSPSATPPSQAPP 433
Query: 271 TRVRPAPQTSGRPGPLGGPAISVVLSPASQAP 302
+ P Q P P P +S +P QAP
Sbjct: 434 SLAAPPLQVP--PSPPASPPMSPSATPPPQAP 463
Score = 33.5 bits (75), Expect = 0.27
Identities = 82/320 (25%), Positives = 104/320 (32%), Gaps = 43/320 (13%)
Query: 38 PGEAGQDPSLKPSQGGTALLADPPVSDFR-PPQLLTCLGGPWCLC---PLCSLQVEDPWL 93
P PS P LA PP+ + PPQ L P P S + P+
Sbjct: 447 PASPPMSPSATPPPQAPPPLAAPPLQLAKPPPQAPPALATPPLQALPSPPASFPGQAPFS 506
Query: 94 FSLLQPRDQLRLENQESCCVCGREDNSVSMTGSIPPGGRNGKKSLRMAASGPESGL---- 149
S P L ++ V V + PP + R GP++ +
Sbjct: 507 PSASLPMSPLATPPPQAPPVLAAPLLQVPPS---PPASPTLQAPRRPPTPGPDTSVSGPR 563
Query: 150 --WVEAPGHRHRP-RTP-----WPPRAGSAGSCETRPNE-----------AHLAPPRGRV 190
APG P R+P P AG + S + P E A +PP
Sbjct: 564 LTLALAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDSGPEGGAAASPPPDAE 623
Query: 191 AGLDHLPHQALKAPQSPRAFPPGGPGDAGTPMPKAGGLRKRPG---ITRTEGNPSPRPPR 247
H P + P P AF G PG A P P A G G I TEG S P
Sbjct: 624 LAACH-PAAWSRGPAPPLAF-RGAPG-APLPWPPATGPGSADGLCTIYETEGPESATPAP 680
Query: 248 RLTLPEDHPRLANARRRRKRALATRVRPAPQTSGRPGPLGGPAISVVLSPASQ----APE 303
P P + + R Q PLG SVV S+ A
Sbjct: 681 GALDPGPSPGTSGGKAAAGAGAGASSRSPKQARLGELPLGALQASVVQHLLSRTLLLAAA 740
Query: 304 KGWSQSRGGARLGPEGQEPG 323
+G + GG+ GP G E G
Sbjct: 741 EG---AAGGSGGGPGGAEGG 757
Score = 29.6 bits (65), Expect = 3.9
Identities = 42/180 (23%), Positives = 60/180 (33%), Gaps = 32/180 (17%)
Query: 165 PPRAGSAGSCETRPNEAHLAPPRGRVAGLDHLPHQALKAPQSPRAFPP--------GGPG 216
PP + T P++A PP L P P SP A PP P
Sbjct: 415 PPASPPVSPSATPPSQA---PPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPL 471
Query: 217 DAGTPMPKAGGLRKRPGITRTEGNPS--------------PRPPRRLTLPEDHPRLANAR 262
P P+A P + P+ P P P+ P LA
Sbjct: 472 QLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPL 531
Query: 263 RRRKRAL-ATRVRPAPQTSGRPGP---LGGPAISVVLSPASQAPEKGWSQSRGGARLGPE 318
+ + A+ AP+ PGP + GP +++ L+P P S+S GP+
Sbjct: 532 LQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPP---SRSPSSTLSGPD 588
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 50.8 bits (120), Expect = 2e-06
Identities = 61/207 (29%), Positives = 72/207 (34%), Gaps = 26/207 (12%)
Query: 129 PGGRNGKKSLRMAASGPESGLWVEAPGHRHRPRTPWPPRAGSAGSCETRPNEAHLAPPRG 188
P G G K A P + APGH P PP + A P + +G
Sbjct: 896 PTGPPGAKGQEGAHGAPGAAGNPGAPGHVGAPGPSGPPGSVGAPGLRGTPGKDGERGEKG 955
Query: 189 RVAGLDHLPHQALKAPQSPRAFPPGGPGDAGTPMPKAGGLRKRPGITRTEGNPSPRPPRR 248
AG + P P PR G PG G P P G PG+ + G P P +
Sbjct: 956 -AAGEEGSP-----GPVGPR----GDPGAPGLPGPPGKGKDGEPGLRGSPGLPGPLGTK- 1004
Query: 249 LTLPEDHPRLANARRRRKRALATRV----RPAPQTSGRPGPLGGPAISVVLSPASQAP-- 302
R AL + R AP G PG G P I V P P
Sbjct: 1005 -------AACGKVRGSENCALGGQCVKGDRGAPGIPGSPGSRGDPGIGVAGPPGPSGPPG 1057
Query: 303 EKGWSQSRGGARL-GPEGQEPGRDQKP 328
+KG SRG GP+G GRD P
Sbjct: 1058 DKGSPGSRGLPGFPGPQG-PAGRDGAP 1083
Score = 45.4 bits (106), Expect = 7e-05
Identities = 51/187 (27%), Positives = 67/187 (35%), Gaps = 12/187 (6%)
Query: 154 PGHRHRPRTPWPPRA----GSAGSCETRPNEAHLAPPRGR-VAGLDHLPHQALKAPQSPR 208
PG P P PP A G+AG + + PP + +GL +P + K + +
Sbjct: 1191 PGFMGPPGNPGPPGADGIAGAAGPPGIQGSPGKEGPPGPQGPSGLPGIPGEEGKEGRDGK 1250
Query: 209 AFPPGGPGDAGTP-MPKAGGLRKRPGITRTEGNPSPRPPRRLTLPEDHPRLANARRRRKR 267
PPG PG AG P +P G R PG G+ PR + P +
Sbjct: 1251 PGPPGEPGKAGEPGLPGPEGARGPPGFKGHTGDSGAPGPRGESGAMGLPGQEGLPGKDGD 1310
Query: 268 ALATRVRPAPQTSGRPGPLGGPAISVVLSPASQAPEKGWSQSRGG----ARLGPEGQ--E 321
T + G PG G P P+ +KG G LGP G E
Sbjct: 1311 TGPTGPQGPQGPRGPPGKNGSPGSPGEPGPSGTPGQKGSKGENGSPGLPGFLGPRGPPGE 1370
Query: 322 PGRDQKP 328
PG P
Sbjct: 1371 PGEKGVP 1377
Score = 35.8 bits (81), Expect = 0.054
Identities = 51/193 (26%), Positives = 65/193 (33%), Gaps = 39/193 (20%)
Query: 120 SVSMTGSIPPGGRNGKKSLRMAASGPESGLWVEAPGHRHRPRTPWPPRAGSAGSCETR-- 177
SV G G++G++ + AA S V G P P PP G G R
Sbjct: 935 SVGAPGLRGTPGKDGERGEKGAAGEEGSPGPVGPRGDPGAPGLPGPPGKGKDGEPGLRGS 994
Query: 178 ---PNEAHLAPPRGRVAGLDH--LPHQALKAPQSPRAFP--PGGPGD-----AGTPMPKA 225
P G+V G ++ L Q +K + P PG GD AG P P
Sbjct: 995 PGLPGPLGTKAACGKVRGSENCALGGQCVKGDRGAPGIPGSPGSRGDPGIGVAGPPGPSG 1054
Query: 226 G-GLRKRPGITRTEGNPSPRPPRRLTLPEDHPRLANARRRRKRALATRVRPAPQTSGRPG 284
G + PG G P P+ P AP G G
Sbjct: 1055 PPGDKGSPGSRGLPGFPGPQGPAGRD------------------------GAPGNPGERG 1090
Query: 285 PLGGPAISVVLSP 297
P G P +S +LSP
Sbjct: 1091 PPGKPGLSSLLSP 1103
Score = 34.3 bits (77), Expect = 0.16
Identities = 31/94 (32%), Positives = 33/94 (35%), Gaps = 6/94 (6%)
Query: 153 APGHRHRPRTPWPPRAGSAGSCETRPNEAHLAPPRGRVAGLDHLPHQALKAPQSPRAFPP 212
APG R P PP A E R L RG+ + L Q P P
Sbjct: 661 APGPRGHQGAPGPPGARGPIGPEGRDGPPGLQGLRGKKGDMGPPGIPGLLGLQGP----P 716
Query: 213 GGPGDAGTPMPKAGGLRKRPGITRTEGNPSPRPP 246
G PG G P P GG PG G P P P
Sbjct: 717 GPPGVPGPPGP--GGSPGLPGEIGFPGKPGPPGP 748
Score = 31.2 bits (69), Expect = 1.3
Identities = 40/146 (27%), Positives = 49/146 (33%), Gaps = 32/146 (21%)
Query: 159 RPRTPWPP-------RAGSAGSCETRPNEAHLAPPRGRVA--------GLDHLPHQALKA 203
RP P PP RAG G RP + L P G + G P L+
Sbjct: 1498 RPGPPGPPGKDGLPGRAGPMGE-PGRPGQGGLEGPSGPIGPKGERGAKGDPGAPGVGLRG 1556
Query: 204 PQSPRAFPPGGPGDAGTPMPKAGGLRKRPGITRTEGNPSPRPPRRLTLPEDHPRLANARR 263
P PG PG G P GL PGI +G T P HP L
Sbjct: 1557 EMGP----PGIPGQPGEPGYAKDGL---PGIPGPQGE---------TGPAGHPGLPGPPG 1600
Query: 264 RRKRALATRVRPAPQTSGRPGPLGGP 289
+ ++ + RPG + GP
Sbjct: 1601 PPGQCDPSQCAYFASLAARPGNVKGP 1626
Score = 30.8 bits (68), Expect = 1.7
Identities = 37/138 (26%), Positives = 51/138 (36%), Gaps = 31/138 (22%)
Query: 211 PPGGPGDAGTPMPKAGGLRKRPGITRTEGNPS-------PRPPRRLTLP---EDHPRLAN 260
PPGG G G P G + G+ +G P P PP + P + P +
Sbjct: 1406 PPGGKGQPGD--PGIPGHKGHTGLMGPQGLPGENGPVGPPGPPGQPGFPGLRGESPSMET 1463
Query: 261 ARR-----------RRKRALATRVRPA--PQTSGRPGPLGGPAISVVLSPASQAPEKGWS 307
RR R L ++ PA + GRPGP G P + A E G
Sbjct: 1464 LRRLIQEELGKQLETRLAYLLAQMPPAYMKSSQGRPGPPGPPGKDGLPGRAGPMGEPG-R 1522
Query: 308 QSRGGAR-----LGPEGQ 320
+GG +GP+G+
Sbjct: 1523 PGQGGLEGPSGPIGPKGE 1540
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 50.4 bits (119), Expect = 2e-06
Identities = 51/184 (27%), Positives = 74/184 (40%), Gaps = 7/184 (3%)
Query: 124 TGSIPPGGRNGKKSLRMAASGPESGLWVEAPGHRHRPRTPWPPRAGSAGS--CETRPNEA 181
T PG + + R A+G E GL AP R RP T P ++ S+ S T P+ A
Sbjct: 164 TSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPA 223
Query: 182 HLAPPRGRVAGLDHLPHQALKAPQSPRAFPP-GGPGDAGTPMPKAGGLRKRPGITRTEGN 240
P GL ++L + +P + P GP GTP A + +P +
Sbjct: 224 ARRRPSAG-GGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRP 282
Query: 241 PSPRPPRRLTLPEDHPRLANARRRRKRALATRVRPA--PQTSGRPGPLGGPAISVVLSPA 298
P PPR+ P P L+++ T+ RP P + P P P + +P
Sbjct: 283 PQVTPPRKDAAPALGP-LSSSPLATPSPSGTKARPVPPPDNAATPLPATLPPSPPLATPL 341
Query: 299 SQAP 302
AP
Sbjct: 342 PLAP 345
Score = 35.8 bits (81), Expect = 0.054
Identities = 44/155 (28%), Positives = 58/155 (37%), Gaps = 34/155 (21%)
Query: 160 PRTPWPPRAGSAGSCETRPNEAHLAPPRGRVAG-------LDHLPHQA---LKAPQSPRA 209
P PP + + E P+ LAPP + A L+ P A L+AP SP
Sbjct: 521 PSLQTPPASLTTPPLENLPS---LAPPPLQTASAPLTTPHLETPPCPAPCPLQAPPSPLT 577
Query: 210 FPPGG-PGDAGTPMPKAGGLRKRPGITRTEGNPSPR-PPRRLTLPEDHPRLANARRRRKR 267
PP P TP P+A P + +G PSP P P+ P LA
Sbjct: 578 TPPPETPSSIATPPPQAPPALASPPL---QGLPSPPLSPLATPPPQAPPXLA-------- 626
Query: 268 ALATRVRPAPQTSGRPGPLGGPAISVVLSPASQAP 302
P P P P +S + +P+ QAP
Sbjct: 627 --------LPPLQAPPSPPASPPLSPLATPSPQAP 653
Score = 35.4 bits (80), Expect = 0.070
Identities = 43/159 (27%), Positives = 61/159 (38%), Gaps = 13/159 (8%)
Query: 145 PESGLWVEAPGHRHRPRTPWPPRAGSAGSCETRPNEAHLAPPRGRVAGLDHLPHQALKAP 204
PE+ + P + P PP G P + LA P + LP L+AP
Sbjct: 581 PETPSSIATPPPQAPPALASPPLQGLPS-----PPLSPLATPPPQAPPXLALP--PLQAP 633
Query: 205 QSPRAFPPGGPGDAGTPMPKAGGLRKRPGITRTEGNPSPRPPRRLTL-PEDHPRLANARR 263
SP A PP P TP P+A + + +P P PP + P P ++ +
Sbjct: 634 PSPPASPPLSP--LATPSPQAPNALA-VHLLQAPFSPPPSPPVQAPFSPPASPPVSPSAT 690
Query: 264 RRKRALATRVRPAPQTSGRPGPLGGPAISVVLSPASQAP 302
+A + P Q P P P +S +P QAP
Sbjct: 691 PPSQAPPSLAAPPLQVP--PSPPASPPMSPSATPPPQAP 727
Score = 35.0 bits (79), Expect = 0.092
Identities = 71/273 (26%), Positives = 92/273 (33%), Gaps = 35/273 (12%)
Query: 41 AGQDPSLKPSQGGTALLADPPVSDFRPPQLLTCLGGPWCLCPL---CSLQVEDPW--LFS 95
A P P Q +L A PP+ P + + L P + PL SL P L S
Sbjct: 448 ASTPPDSPPLQAPLSLPASPPLQTSLSPAV-SPLSSPLTIHPLQALSSLASHSPQAPLSS 506
Query: 96 LLQPRDQLRLENQESCCVCGREDNSVSMTGSIPPGGRNGKKSLRMAASGP-ESGLWVEAP 154
L+ P LE Q S + S+T PP ++L A P ++
Sbjct: 507 LIMPP----LETQSSLAPPSLQTPPASLT--TPP-----LENLPSLAPPPLQTASAPLTT 555
Query: 155 GHRHRPRTPWP-PRAGSAGSCETRPNEAHLA---PPRGRVAGLDHLPHQALKAPQ-SPRA 209
H P P P P T P E + PP L P Q L +P SP A
Sbjct: 556 PHLETPPCPAPCPLQAPPSPLTTPPPETPSSIATPPPQAPPALASPPLQGLPSPPLSPLA 615
Query: 210 FPPGGPGDAGTPMPKAGGLRKRPGITRTEGNPSPRPPRRLTLPEDHPRLANARRRRKRAL 269
PP P+A P + P+ P L P P+ NA
Sbjct: 616 TPP----------PQAPPXLALPPLQAPPSPPASPPLSPLATPS--PQAPNALAVHLLQA 663
Query: 270 ATRVRPAPQTSGRPGPLGGPAISVVLSPASQAP 302
P+P P P +S +P SQAP
Sbjct: 664 PFSPPPSPPVQAPFSPPASPPVSPSATPPSQAP 696
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 50.4 bits (119), Expect = 2e-06
Identities = 61/242 (25%), Positives = 79/242 (32%), Gaps = 52/242 (21%)
Query: 120 SVSMTGSIPPGGRNGKKSLRMAASGPESGLWVEAPGHRHRPRTPWPPRAGSAG------S 173
+V GS P G + S +GP+S PR P P R G A
Sbjct: 522 AVPTPGSAPTGSKKPIGSEASKKAGPKSS-----------PRKPVPLRPGKAARDVPLSD 570
Query: 174 CETRPNEAHLAPPRGRVAGLDHLPHQALKAPQSPRAF------------------PPGGP 215
TRP+ P + L P Q L + P + PPG
Sbjct: 571 LTTRPSPRQPQPSQQTTPALVLAPAQFLSSSPRPTSSGYSIFHLAGSTPFPLLMGPPGPK 630
Query: 216 GDAGTPMPKAGGLRKRPGITRTEGNPSPRPPRRLTLPEDHPRLANARRRRKRALATRVRP 275
GD G P P PG+ G P R PR P +P L + + + P
Sbjct: 631 GDCGLPGP--------PGLPGLPGIPGARGPRGPPGPYGNPGLPGPPGAKGQKGDPGLSP 682
Query: 276 APQTSGRPGPLGGPAISVVLSPASQAPEKGWSQSRG----GARLGPEGQE-----PGRDQ 326
G G +G P +S P + KG+ G + GPEG PGR
Sbjct: 683 GKAHDGAKGDMGLPGLSGNPGPPGRKGHKGYPGPAGHPGEQGQPGPEGSPGAKGYPGRQG 742
Query: 327 KP 328
P
Sbjct: 743 LP 744
Score = 33.5 bits (75), Expect = 0.27
Identities = 53/204 (25%), Positives = 72/204 (35%), Gaps = 47/204 (23%)
Query: 123 MTGSIPPGGRNGKKSLR-----MAASGPESGLW-VEAPGHRHRPRTPWPPRAGSAGSCET 176
+TG P G++GK+ + A G + L + PG P TP P GS GS
Sbjct: 1235 VTGVRGPEGKSGKQGEKGRTGAKGAKGYQGQLGEMGVPGDPGPPGTPGPK--GSRGSLGP 1292
Query: 177 RPNEAHL-APPRGRVAGLDHLPHQALKAPQSPRA---------------FPPGGPGDAGT 220
+ A +AG D H+ + P P PPG PGD G
Sbjct: 1293 TGAPGRMGAQGEPGLAGYDG--HKGIVGPLGPPGPKGEKGEQGEDGKAEGPPGPPGDRG- 1349
Query: 221 PMPKAG-----------------GLRKRPGITRTEGNPSPRPPRRLTLPEDHPRLANARR 263
P+ G GLR +PG +G P PR P+ +
Sbjct: 1350 PVGDRGDRGEPGDPGYPGQEGVQGLRGKPG---QQGQPGHPGPRGWPGPKGSKGAEGPKG 1406
Query: 264 RRKRALATRVRPAPQTSGRPGPLG 287
++ +A A R G PGP G
Sbjct: 1407 KQGKAGAPGRRGVQGLQGLPGPRG 1430
Score = 31.2 bits (69), Expect = 1.3
Identities = 35/122 (28%), Positives = 42/122 (34%), Gaps = 11/122 (9%)
Query: 204 PQSPRAFPP--GGPGDAGTP----MPKAGGLRKRPGITRTEGNPSPRPPRRLTLPEDHPR 257
P P FP G PGD G P A GL G EG+ P P E P
Sbjct: 905 PPGPEGFPGDIGPPGDNGPEGMKGKPGARGLPGPRGQLGPEGDEGPMGPPGAPGLEGQP- 963
Query: 258 LANARRRRKRALATRVRPAPQTSGRPGPLGGPAISVVLSPASQAPEKGWSQSRGGARLGP 317
+ R V+ P GRPGP+G + + G RG +GP
Sbjct: 964 --GRKGFPGRPGLDGVKGEPGDPGRPGPVGEQGFMGFIGLVGEPGIVGEKGDRG--MMGP 1019
Query: 318 EG 319
G
Sbjct: 1020 PG 1021
Score = 28.9 bits (63), Expect = 6.6
Identities = 54/218 (24%), Positives = 80/218 (36%), Gaps = 42/218 (19%)
Query: 117 EDNSVSMTGSIPPGGRNGKKSLRMAASGPESGLWVEAPGHRHRPRTPWPPRAGSAGSCET 176
E S + G P GR G+ + +G L G R P P P +G G+ +
Sbjct: 1076 EQGSRGLKGPPGPQGRPGRPG-QQGVAGERGHL-----GSRGFPGIPGP--SGPPGT-KG 1126
Query: 177 RPNEAHLAPPRGRVAGLDHLPHQALKAPQSPRAF--PPGGPGDAGT-----PMPKAG--- 226
P E P+G + + P+ P PG PG+AG P+ G
Sbjct: 1127 LPGEPGPQGPQGPIGPPGEM------GPKGPPGAVGEPGLPGEAGMKGDLGPLGTPGEQG 1180
Query: 227 --GLRKRPGITRTEGNPSPRPPRRLTLPEDHPRLANARRRRKRALATRVRPAPQTSGRPG 284
G R PG+ EG+ P P L P + + G G
Sbjct: 1181 LIGQRGEPGL---EGDSGPMGPDGLKGDRGDPGPDGEHGEKGQE---------GLMGEDG 1228
Query: 285 PLGGPAISVVLSPASQAPEKGWSQSRGGAR--LGPEGQ 320
P G P ++ V P ++ ++G + R GA+ G +GQ
Sbjct: 1229 PPGPPGVTGVRGPEGKSGKQG-EKGRTGAKGAKGYQGQ 1265
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 48.1 bits (113), Expect = 1e-05
Identities = 51/201 (25%), Positives = 72/201 (35%), Gaps = 16/201 (7%)
Query: 128 PPGGRNGKKSLRMAASGPESGLWVEAPGHRHRPRTPWPPRAGSAGSCETRPNEAHLAPPR 187
PP G N +S R P+ P ++P+ P PP G N+ PP
Sbjct: 225 PPQGDNKSQSARSPPGKPQG----PPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPP 280
Query: 188 GRVAGLDHLPHQALKAPQSPRAFPPGGPGDAGT----PMPKAGGLRKRPGITRTEGNPSP 243
G+ G ++ +SP P G P G P P G +P +G P
Sbjct: 281 GKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPG----KPQGPPPQGGNKP 336
Query: 244 RPPRRLTLPEDHPRLANARRRRKRALATRVRPAPQTSGRPGPLGGPAISVVLSPASQAPE 303
+ P P+ P ++ R R+ + + PQ G P G P + QAP
Sbjct: 337 QGPPPPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGN-NPQGPPPPAGGNPQQPQAPP 395
Query: 304 KGWSQSRGGARLGPEGQEPGR 324
G Q G P+G P R
Sbjct: 396 AGQPQ---GPPRPPQGGRPSR 413
Score = 37.7 bits (86), Expect = 0.014
Identities = 49/209 (23%), Positives = 74/209 (35%), Gaps = 21/209 (10%)
Query: 128 PPGGRNGKKSLRMAASGPESGLWVEAPGHRHRPRTPWPPRAGSAGSCETRPNEAHLAPPR 187
PP + +S R P+ P ++P+ P PP G N+ PP
Sbjct: 101 PPPQGDKSRSPRSPPGKPQG----PPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPP 156
Query: 188 GRVAGLDHLPHQALKAPQSPRAFPPGGPGDAGT----PMPKAGGLRKRP--GITRTEGNP 241
G+ G ++ +SP P G P G P P G + P G + +G P
Sbjct: 157 GKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPP 216
Query: 242 SPRPPRRLTLPEDHPRLANARRRRKRALATRVRPAPQTSGRPGPLGGPAISVVLSPASQA 301
P P+ P+ + +AR + + Q G P P G P
Sbjct: 217 PPGKPQG-PPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKP---------QGP 266
Query: 302 PEKGWSQSRGGARLG-PEGQEPGRDQKPR 329
P +G ++ +G G P+G P K R
Sbjct: 267 PPQGGNKPQGPPPPGKPQGPPPQGGSKSR 295
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 47.8 bits (112), Expect = 1e-05
Identities = 92/364 (25%), Positives = 125/364 (34%), Gaps = 70/364 (19%)
Query: 5 TQGEGSRVKESEIRVRDASTSQGTQGLPENHQLPGEAGQDPSLKPSQGGTAL---LADPP 61
++GE R + + + G+ GLP + PG G K G L L P
Sbjct: 402 SKGERGRPGKDAMGTPGSPGCAGSPGLPGSPGPPGPPGDIVFRKGPPGDHGLPGYLGSPG 461
Query: 62 VSDFRPPQLLTCLGGPWCLCPLCSLQVEDPWLFSLLQPRDQLRLENQESCCVCGREDNSV 121
+ P+ G P LC C P L L + ++ S
Sbjct: 462 IPGVDGPK-----GEPGLLCTQCPYIPGPPGLPGLPGLHGVKGIPGRQGAAGLKGSPGSP 516
Query: 122 SMTGSIP-----PG--GRNGKKSLRMAASGPESGLWVEA-PGHRHRPRTPWPPRAGSAGS 173
TG +P PG G G K + PE + V PG R +P R G G
Sbjct: 517 GNTG-LPGFPGFPGAQGDPGLKGEKGETLQPEGQVGVPGDPGLRGQPG-----RKGLDGI 570
Query: 174 CETRPNEAHLAPPRGRVAGLDHLPHQALKAPQSPRAFP--PGGPGDAGTPMPKAGGLRKR 231
T P L P+G +A K Q P P PG PG AG P G +
Sbjct: 571 PGT-PGVKGLPGPKGELA------LSGEKGDQGPPGDPGSPGSPGPAGPAGPPGYGPQGE 623
Query: 232 PGITRTEGNP-SPRPPRRLTLPEDHPRLANARRRRKRALATRV-----------RPAPQ- 278
PG+ T+G P +P PP A R + +++T V P PQ
Sbjct: 624 PGLQGTQGVPGAPGPP------------GEAGPRGELSVSTPVPGPPGPPGPPGHPGPQG 671
Query: 279 ------------TSGRPGPLGGPAISVVLSPASQAP--EKGWSQSRGGARLGPEGQEPGR 324
G PGP G P I + P P ++G+ ++G + EPG
Sbjct: 672 PPGIPGSLGKCGDPGLPGPDGEPGIPGIGFPGPPGPKGDQGFPGTKGSLGCPGKMGEPGL 731
Query: 325 DQKP 328
KP
Sbjct: 732 PGKP 735
Score = 40.8 bits (94), Expect = 0.002
Identities = 54/202 (26%), Positives = 69/202 (34%), Gaps = 37/202 (18%)
Query: 129 PGGRNGKKSLRMAASGPESGLWVE-APGHRHRPRTPW-PPRAGSAGSCETRPNEAHLAPP 186
P G G+ L A GP + A G R P P P R G+ G A P
Sbjct: 1165 PAGEKGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGD----------AGP 1214
Query: 187 RGRVAGLDHLPHQALKAPQSPRAFPPGGPGDAGTPMPKAGGLRKRPGITRTEGNPSPRPP 246
RG P FP G PG G +P G R PG + G P P P
Sbjct: 1215 RG---------------PTGIEGFP-GPPGLPGAIIPGQTGNRGPPGSRGSPGAPGPPGP 1258
Query: 247 ---RRLTLPEDHPRLANARRRRKRALATRVRP-----APQTSGRPGPLGGPAISVVLSPA 298
+ + D + + + A + P AP T G PGP G P
Sbjct: 1259 PGSHVIGIKGDKGSMGHPGPKGPPGTAGDMGPPGRLGAPGTPGLPGPRGDPGFQGFPGVK 1318
Query: 299 SQAPEKGWSQSRG-GARLGPEG 319
+ G+ S G +GP+G
Sbjct: 1319 GEKGNPGFLGSIGPPGPIGPKG 1340
Score = 35.4 bits (80), Expect = 0.070
Identities = 44/173 (25%), Positives = 60/173 (34%), Gaps = 27/173 (15%)
Query: 154 PGHRHRPRTPWPPRAGSAGSCETRPNEAHLAPPRGRVA--GLDHLPHQ-ALKAPQSPRAF 210
PG + P P G+ G P E + G + GL LP + PR
Sbjct: 738 PGAKGEPAVAMPGGPGTPGF----PGERGNSGEHGEIGLPGLPGLPGTPGNEGLDGPRGD 793
Query: 211 P--PGGPGDAGTPMPKAGGLRKRPGITRTEGNPSPRPPRRLTLPEDHPRLANARRRRKRA 268
P PG PG+ G P G R G+ G + R T P+ P +
Sbjct: 794 PGQPGPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQGRRGKTGPKGDPGI---------- 843
Query: 269 LATRVRPAPQTSGRPGPLGGPAISVVLSPASQAPEKGWSQSRGGARLGPEGQE 321
P SG PG G P I ++G+ + G LGP G++
Sbjct: 844 ------PGLDRSGFPGETGSPGIPGHQGEMGPLGQRGYPGNPG--ILGPPGED 888
Score = 32.3 bits (72), Expect = 0.60
Identities = 34/115 (29%), Positives = 42/115 (36%), Gaps = 9/115 (7%)
Query: 212 PGGPGDAGTP-MPKAGGLRKRPGITRTEGNPSPRPPRRLTLPEDHPRLANARRRRKRALA 270
PG G+ G P MP GL+ PG G P PR T P L
Sbjct: 966 PGEKGNRGVPGMPGLKGLKGLPG---PAGPPGPRGDLGSTGNPGEPGLRGIPGSMGNMGM 1022
Query: 271 TRVRPAPQTSGRPGPLGGPAISVVLSPASQAPEKGWSQSRGGARLGPEGQ--EPG 323
+ T G PG G P + + E G+S+ G R GP G +PG
Sbjct: 1023 PGSKGKRGTLGFPGRAGRPGLPGIHGLQGDKGEPGYSE---GTRPGPPGPTGDPG 1074
Score = 30.8 bits (68), Expect = 1.7
Identities = 37/134 (27%), Positives = 44/134 (32%), Gaps = 27/134 (20%)
Query: 128 PPG--GRNGKKSLRMAASGPESGLWVEAPGHRHRPRTPWPPRA-GSAGSCETRPNEAHLA 184
PPG G G+ S+ GP PG P PP GS G C + L
Sbjct: 638 PPGEAGPRGELSVSTPVPGPPG-----PPGPPGHPGPQGPPGIPGSLGKC----GDPGLP 688
Query: 185 PPRGRVAGLDHLPHQALKAPQSPRAFP--------------PGGPGDAGTPMPKAGGLRK 230
P G G+ + P+ + FP PG PG G P K
Sbjct: 689 GPDGE-PGIPGIGFPGPPGPKGDQGFPGTKGSLGCPGKMGEPGLPGKPGLPGAKGEPAVA 747
Query: 231 RPGITRTEGNPSPR 244
PG T G P R
Sbjct: 748 MPGGPGTPGFPGER 761
Score = 30.8 bits (68), Expect = 1.7
Identities = 27/96 (28%), Positives = 37/96 (38%), Gaps = 19/96 (19%)
Query: 211 PPGGPGDAGTP-------MPKAGGLRKRPGITRTE---GNPSPRPPRRLTLPEDHPRL-- 258
PPG PG+ GTP +P G R PG + GNP P + + P L
Sbjct: 902 PPGPPGNPGTPGQRGSPGIPGVKGQRGTPGAKGEQGDKGNPGPSEISHVIGDKGEPGLKG 961
Query: 259 --ANARRRRKRAL-----ATRVRPAPQTSGRPGPLG 287
N + R + ++ P +G PGP G
Sbjct: 962 FAGNPGEKGNRGVPGMPGLKGLKGLPGPAGPPGPRG 997
Score = 29.6 bits (65), Expect = 3.9
Identities = 36/119 (30%), Positives = 44/119 (36%), Gaps = 24/119 (20%)
Query: 211 PPGGPGDAGTPMPKAGGLRKRPGITRTEGNPSPRPPRRLTLPEDHPRLANARRRRKRALA 270
P G PG G+P GLR PG +G+ R R K A+
Sbjct: 373 PSGPPGVPGSPGSSRPGLRGAPGWPGLKGSKGER-----------------GRPGKDAMG 415
Query: 271 TRVRP----APQTSGRPGPLGGPA-ISVVLSPASQAPEKGWSQSRGGARL-GPEGQEPG 323
T P +P G PGP G P I P G+ S G + GP+G EPG
Sbjct: 416 TPGSPGCAGSPGLPGSPGPPGPPGDIVFRKGPPGDHGLPGYLGSPGIPGVDGPKG-EPG 473
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 47.8 bits (112), Expect = 1e-05
Identities = 92/364 (25%), Positives = 125/364 (34%), Gaps = 70/364 (19%)
Query: 5 TQGEGSRVKESEIRVRDASTSQGTQGLPENHQLPGEAGQDPSLKPSQGGTAL---LADPP 61
++GE R + + + G+ GLP + PG G K G L L P
Sbjct: 402 SKGERGRPGKDAMGTPGSPGCAGSPGLPGSPGPPGPPGDIVFRKGPPGDHGLPGYLGSPG 461
Query: 62 VSDFRPPQLLTCLGGPWCLCPLCSLQVEDPWLFSLLQPRDQLRLENQESCCVCGREDNSV 121
+ P+ G P LC C P L L + ++ S
Sbjct: 462 IPGVDGPK-----GEPGLLCTQCPYIPGPPGLPGLPGLHGVKGIPGRQGAAGLKGSPGSP 516
Query: 122 SMTGSIP-----PG--GRNGKKSLRMAASGPESGLWVEA-PGHRHRPRTPWPPRAGSAGS 173
TG +P PG G G K + PE + V PG R +P R G G
Sbjct: 517 GNTG-LPGFPGFPGAQGDPGLKGEKGETLQPEGQVGVPGDPGLRGQPG-----RKGLDGI 570
Query: 174 CETRPNEAHLAPPRGRVAGLDHLPHQALKAPQSPRAFP--PGGPGDAGTPMPKAGGLRKR 231
T P L P+G +A K Q P P PG PG AG P G +
Sbjct: 571 PGT-PGVKGLPGPKGELA------LSGEKGDQGPPGDPGSPGSPGPAGPAGPPGYGPQGE 623
Query: 232 PGITRTEGNP-SPRPPRRLTLPEDHPRLANARRRRKRALATRV-----------RPAPQ- 278
PG+ T+G P +P PP A R + +++T V P PQ
Sbjct: 624 PGLQGTQGVPGAPGPP------------GEAGPRGELSVSTPVPGPPGPPGPPGHPGPQG 671
Query: 279 ------------TSGRPGPLGGPAISVVLSPASQAP--EKGWSQSRGGARLGPEGQEPGR 324
G PGP G P I + P P ++G+ ++G + EPG
Sbjct: 672 PPGIPGSLGKCGDPGLPGPDGEPGIPGIGFPGPPGPKGDQGFPGTKGSLGCPGKMGEPGL 731
Query: 325 DQKP 328
KP
Sbjct: 732 PGKP 735
Score = 40.8 bits (94), Expect = 0.002
Identities = 54/202 (26%), Positives = 69/202 (34%), Gaps = 37/202 (18%)
Query: 129 PGGRNGKKSLRMAASGPESGLWVE-APGHRHRPRTPW-PPRAGSAGSCETRPNEAHLAPP 186
P G G+ L A GP + A G R P P P R G+ G A P
Sbjct: 1165 PAGEKGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGD----------AGP 1214
Query: 187 RGRVAGLDHLPHQALKAPQSPRAFPPGGPGDAGTPMPKAGGLRKRPGITRTEGNPSPRPP 246
RG P FP G PG G +P G R PG + G P P P
Sbjct: 1215 RG---------------PTGIEGFP-GPPGLPGAIIPGQTGNRGPPGSRGSPGAPGPPGP 1258
Query: 247 ---RRLTLPEDHPRLANARRRRKRALATRVRP-----APQTSGRPGPLGGPAISVVLSPA 298
+ + D + + + A + P AP T G PGP G P
Sbjct: 1259 PGSHVIGIKGDKGSMGHPGPKGPPGTAGDMGPPGRLGAPGTPGLPGPRGDPGFQGFPGVK 1318
Query: 299 SQAPEKGWSQSRG-GARLGPEG 319
+ G+ S G +GP+G
Sbjct: 1319 GEKGNPGFLGSIGPPGPIGPKG 1340
Score = 35.4 bits (80), Expect = 0.070
Identities = 44/173 (25%), Positives = 60/173 (34%), Gaps = 27/173 (15%)
Query: 154 PGHRHRPRTPWPPRAGSAGSCETRPNEAHLAPPRGRVA--GLDHLPHQ-ALKAPQSPRAF 210
PG + P P G+ G P E + G + GL LP + PR
Sbjct: 738 PGAKGEPAVAMPGGPGTPGF----PGERGNSGEHGEIGLPGLPGLPGTPGNEGLDGPRGD 793
Query: 211 P--PGGPGDAGTPMPKAGGLRKRPGITRTEGNPSPRPPRRLTLPEDHPRLANARRRRKRA 268
P PG PG+ G P G R G+ G + R T P+ P +
Sbjct: 794 PGQPGPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQGRRGKTGPKGDPGI---------- 843
Query: 269 LATRVRPAPQTSGRPGPLGGPAISVVLSPASQAPEKGWSQSRGGARLGPEGQE 321
P SG PG G P I ++G+ + G LGP G++
Sbjct: 844 ------PGLDRSGFPGETGSPGIPGHQGEMGPLGQRGYPGNPG--ILGPPGED 888
Score = 32.3 bits (72), Expect = 0.60
Identities = 34/115 (29%), Positives = 42/115 (36%), Gaps = 9/115 (7%)
Query: 212 PGGPGDAGTP-MPKAGGLRKRPGITRTEGNPSPRPPRRLTLPEDHPRLANARRRRKRALA 270
PG G+ G P MP GL+ PG G P PR T P L
Sbjct: 966 PGEKGNRGVPGMPGLKGLKGLPG---PAGPPGPRGDLGSTGNPGEPGLRGIPGSMGNMGM 1022
Query: 271 TRVRPAPQTSGRPGPLGGPAISVVLSPASQAPEKGWSQSRGGARLGPEGQ--EPG 323
+ T G PG G P + + E G+S+ G R GP G +PG
Sbjct: 1023 PGSKGKRGTLGFPGRAGRPGLPGIHGLQGDKGEPGYSE---GTRPGPPGPTGDPG 1074
Score = 30.8 bits (68), Expect = 1.7
Identities = 37/134 (27%), Positives = 44/134 (32%), Gaps = 27/134 (20%)
Query: 128 PPG--GRNGKKSLRMAASGPESGLWVEAPGHRHRPRTPWPPRA-GSAGSCETRPNEAHLA 184
PPG G G+ S+ GP PG P PP GS G C + L
Sbjct: 638 PPGEAGPRGELSVSTPVPGPPG-----PPGPPGHPGPQGPPGIPGSLGKC----GDPGLP 688
Query: 185 PPRGRVAGLDHLPHQALKAPQSPRAFP--------------PGGPGDAGTPMPKAGGLRK 230
P G G+ + P+ + FP PG PG G P K
Sbjct: 689 GPDGE-PGIPGIGFPGPPGPKGDQGFPGTKGSLGCPGKMGEPGLPGKPGLPGAKGEPAVA 747
Query: 231 RPGITRTEGNPSPR 244
PG T G P R
Sbjct: 748 MPGGPGTPGFPGER 761
Score = 30.8 bits (68), Expect = 1.7
Identities = 27/96 (28%), Positives = 37/96 (38%), Gaps = 19/96 (19%)
Query: 211 PPGGPGDAGTP-------MPKAGGLRKRPGITRTE---GNPSPRPPRRLTLPEDHPRL-- 258
PPG PG+ GTP +P G R PG + GNP P + + P L
Sbjct: 902 PPGPPGNPGTPGQRGSPGIPGVKGQRGTPGAKGEQGDKGNPGPSEISHVIGDKGEPGLKG 961
Query: 259 --ANARRRRKRAL-----ATRVRPAPQTSGRPGPLG 287
N + R + ++ P +G PGP G
Sbjct: 962 FAGNPGEKGNRGVPGMPGLKGLKGLPGPAGPPGPRG 997
Score = 29.6 bits (65), Expect = 3.9
Identities = 36/119 (30%), Positives = 44/119 (36%), Gaps = 24/119 (20%)
Query: 211 PPGGPGDAGTPMPKAGGLRKRPGITRTEGNPSPRPPRRLTLPEDHPRLANARRRRKRALA 270
P G PG G+P GLR PG +G+ R R K A+
Sbjct: 373 PSGPPGVPGSPGSSRPGLRGAPGWPGLKGSKGER-----------------GRPGKDAMG 415
Query: 271 TRVRP----APQTSGRPGPLGGPA-ISVVLSPASQAPEKGWSQSRGGARL-GPEGQEPG 323
T P +P G PGP G P I P G+ S G + GP+G EPG
Sbjct: 416 TPGSPGCAGSPGLPGSPGPPGPPGDIVFRKGPPGDHGLPGYLGSPGIPGVDGPKG-EPG 473
Score = 29.6 bits (65), Expect = 3.9
Identities = 33/122 (27%), Positives = 40/122 (32%), Gaps = 2/122 (1%)
Query: 117 EDNSVSMTGSIPPGGRNGKKSLRMAASGPESGLWVEAPGHRHRPRTPWPPRAGSAGSCET 176
E + GSI P G G K P + + PG P TP P
Sbjct: 1320 EKGNPGFLGSIGPPGPIGPKGPPGVRGDPGTLKIISLPGSPGPPGTPGEPGMQGEPGPPG 1379
Query: 177 RPNEAHLAPPRGRVAGLDHLPHQALKAPQSPRAFPPGGPGDAGTP-MPKAGGLRKRPGIT 235
P PRG+ G D P A + G PG AG+ +P G R G
Sbjct: 1380 PPGNLGPCGPRGK-PGKDGKPGTPGPAGEKGNKGSKGEPGPAGSDGLPGLKGKRGDSGSP 1438
Query: 236 RT 237
T
Sbjct: 1439 AT 1440
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 47.8 bits (112), Expect = 1e-05
Identities = 92/364 (25%), Positives = 125/364 (34%), Gaps = 70/364 (19%)
Query: 5 TQGEGSRVKESEIRVRDASTSQGTQGLPENHQLPGEAGQDPSLKPSQGGTAL---LADPP 61
++GE R + + + G+ GLP + PG G K G L L P
Sbjct: 402 SKGERGRPGKDAMGTPGSPGCAGSPGLPGSPGPPGPPGDIVFRKGPPGDHGLPGYLGSPG 461
Query: 62 VSDFRPPQLLTCLGGPWCLCPLCSLQVEDPWLFSLLQPRDQLRLENQESCCVCGREDNSV 121
+ P+ G P LC C P L L + ++ S
Sbjct: 462 IPGVDGPK-----GEPGLLCTQCPYIPGPPGLPGLPGLHGVKGIPGRQGAAGLKGSPGSP 516
Query: 122 SMTGSIP-----PG--GRNGKKSLRMAASGPESGLWVEA-PGHRHRPRTPWPPRAGSAGS 173
TG +P PG G G K + PE + V PG R +P R G G
Sbjct: 517 GNTG-LPGFPGFPGAQGDPGLKGEKGETLQPEGQVGVPGDPGLRGQPG-----RKGLDGI 570
Query: 174 CETRPNEAHLAPPRGRVAGLDHLPHQALKAPQSPRAFP--PGGPGDAGTPMPKAGGLRKR 231
T P L P+G +A K Q P P PG PG AG P G +
Sbjct: 571 PGT-PGVKGLPGPKGELA------LSGEKGDQGPPGDPGSPGSPGPAGPAGPPGYGPQGE 623
Query: 232 PGITRTEGNP-SPRPPRRLTLPEDHPRLANARRRRKRALATRV-----------RPAPQ- 278
PG+ T+G P +P PP A R + +++T V P PQ
Sbjct: 624 PGLQGTQGVPGAPGPP------------GEAGPRGELSVSTPVPGPPGPPGPPGHPGPQG 671
Query: 279 ------------TSGRPGPLGGPAISVVLSPASQAP--EKGWSQSRGGARLGPEGQEPGR 324
G PGP G P I + P P ++G+ ++G + EPG
Sbjct: 672 PPGIPGSLGKCGDPGLPGPDGEPGIPGIGFPGPPGPKGDQGFPGTKGSLGCPGKMGEPGL 731
Query: 325 DQKP 328
KP
Sbjct: 732 PGKP 735
Score = 40.8 bits (94), Expect = 0.002
Identities = 54/202 (26%), Positives = 69/202 (34%), Gaps = 37/202 (18%)
Query: 129 PGGRNGKKSLRMAASGPESGLWVE-APGHRHRPRTPW-PPRAGSAGSCETRPNEAHLAPP 186
P G G+ L A GP + A G R P P P R G+ G A P
Sbjct: 1165 PAGEKGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGD----------AGP 1214
Query: 187 RGRVAGLDHLPHQALKAPQSPRAFPPGGPGDAGTPMPKAGGLRKRPGITRTEGNPSPRPP 246
RG P FP G PG G +P G R PG + G P P P
Sbjct: 1215 RG---------------PTGIEGFP-GPPGLPGAIIPGQTGNRGPPGSRGSPGAPGPPGP 1258
Query: 247 ---RRLTLPEDHPRLANARRRRKRALATRVRP-----APQTSGRPGPLGGPAISVVLSPA 298
+ + D + + + A + P AP T G PGP G P
Sbjct: 1259 PGSHVIGIKGDKGSMGHPGPKGPPGTAGDMGPPGRLGAPGTPGLPGPRGDPGFQGFPGVK 1318
Query: 299 SQAPEKGWSQSRG-GARLGPEG 319
+ G+ S G +GP+G
Sbjct: 1319 GEKGNPGFLGSIGPPGPIGPKG 1340
Score = 35.4 bits (80), Expect = 0.070
Identities = 44/173 (25%), Positives = 60/173 (34%), Gaps = 27/173 (15%)
Query: 154 PGHRHRPRTPWPPRAGSAGSCETRPNEAHLAPPRGRVA--GLDHLPHQ-ALKAPQSPRAF 210
PG + P P G+ G P E + G + GL LP + PR
Sbjct: 738 PGAKGEPAVAMPGGPGTPGF----PGERGNSGEHGEIGLPGLPGLPGTPGNEGLDGPRGD 793
Query: 211 P--PGGPGDAGTPMPKAGGLRKRPGITRTEGNPSPRPPRRLTLPEDHPRLANARRRRKRA 268
P PG PG+ G P G R G+ G + R T P+ P +
Sbjct: 794 PGQPGPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQGRRGKTGPKGDPGI---------- 843
Query: 269 LATRVRPAPQTSGRPGPLGGPAISVVLSPASQAPEKGWSQSRGGARLGPEGQE 321
P SG PG G P I ++G+ + G LGP G++
Sbjct: 844 ------PGLDRSGFPGETGSPGIPGHQGEMGPLGQRGYPGNPG--ILGPPGED 888
Score = 32.3 bits (72), Expect = 0.60
Identities = 34/115 (29%), Positives = 42/115 (36%), Gaps = 9/115 (7%)
Query: 212 PGGPGDAGTP-MPKAGGLRKRPGITRTEGNPSPRPPRRLTLPEDHPRLANARRRRKRALA 270
PG G+ G P MP GL+ PG G P PR T P L
Sbjct: 966 PGEKGNRGVPGMPGLKGLKGLPG---PAGPPGPRGDLGSTGNPGEPGLRGIPGSMGNMGM 1022
Query: 271 TRVRPAPQTSGRPGPLGGPAISVVLSPASQAPEKGWSQSRGGARLGPEGQ--EPG 323
+ T G PG G P + + E G+S+ G R GP G +PG
Sbjct: 1023 PGSKGKRGTLGFPGRAGRPGLPGIHGLQGDKGEPGYSE---GTRPGPPGPTGDPG 1074
Score = 30.8 bits (68), Expect = 1.7
Identities = 37/134 (27%), Positives = 44/134 (32%), Gaps = 27/134 (20%)
Query: 128 PPG--GRNGKKSLRMAASGPESGLWVEAPGHRHRPRTPWPPRA-GSAGSCETRPNEAHLA 184
PPG G G+ S+ GP PG P PP GS G C + L
Sbjct: 638 PPGEAGPRGELSVSTPVPGPPG-----PPGPPGHPGPQGPPGIPGSLGKC----GDPGLP 688
Query: 185 PPRGRVAGLDHLPHQALKAPQSPRAFP--------------PGGPGDAGTPMPKAGGLRK 230
P G G+ + P+ + FP PG PG G P K
Sbjct: 689 GPDGE-PGIPGIGFPGPPGPKGDQGFPGTKGSLGCPGKMGEPGLPGKPGLPGAKGEPAVA 747
Query: 231 RPGITRTEGNPSPR 244
PG T G P R
Sbjct: 748 MPGGPGTPGFPGER 761
Score = 30.8 bits (68), Expect = 1.7
Identities = 27/96 (28%), Positives = 37/96 (38%), Gaps = 19/96 (19%)
Query: 211 PPGGPGDAGTP-------MPKAGGLRKRPGITRTE---GNPSPRPPRRLTLPEDHPRL-- 258
PPG PG+ GTP +P G R PG + GNP P + + P L
Sbjct: 902 PPGPPGNPGTPGQRGSPGIPGVKGQRGTPGAKGEQGDKGNPGPSEISHVIGDKGEPGLKG 961
Query: 259 --ANARRRRKRAL-----ATRVRPAPQTSGRPGPLG 287
N + R + ++ P +G PGP G
Sbjct: 962 FAGNPGEKGNRGVPGMPGLKGLKGLPGPAGPPGPRG 997
Score = 29.6 bits (65), Expect = 3.9
Identities = 36/119 (30%), Positives = 44/119 (36%), Gaps = 24/119 (20%)
Query: 211 PPGGPGDAGTPMPKAGGLRKRPGITRTEGNPSPRPPRRLTLPEDHPRLANARRRRKRALA 270
P G PG G+P GLR PG +G+ R R K A+
Sbjct: 373 PSGPPGVPGSPGSSRPGLRGAPGWPGLKGSKGER-----------------GRPGKDAMG 415
Query: 271 TRVRP----APQTSGRPGPLGGPA-ISVVLSPASQAPEKGWSQSRGGARL-GPEGQEPG 323
T P +P G PGP G P I P G+ S G + GP+G EPG
Sbjct: 416 TPGSPGCAGSPGLPGSPGPPGPPGDIVFRKGPPGDHGLPGYLGSPGIPGVDGPKG-EPG 473
Score = 29.6 bits (65), Expect = 3.9
Identities = 33/122 (27%), Positives = 40/122 (32%), Gaps = 2/122 (1%)
Query: 117 EDNSVSMTGSIPPGGRNGKKSLRMAASGPESGLWVEAPGHRHRPRTPWPPRAGSAGSCET 176
E + GSI P G G K P + + PG P TP P
Sbjct: 1320 EKGNPGFLGSIGPPGPIGPKGPPGVRGDPGTLKIISLPGSPGPPGTPGEPGMQGEPGPPG 1379
Query: 177 RPNEAHLAPPRGRVAGLDHLPHQALKAPQSPRAFPPGGPGDAGTP-MPKAGGLRKRPGIT 235
P PRG+ G D P A + G PG AG+ +P G R G
Sbjct: 1380 PPGNLGPCGPRGK-PGKDGKPGTPGPAGEKGNKGSKGEPGPAGSDGLPGLKGKRGDSGSP 1438
Query: 236 RT 237
T
Sbjct: 1439 AT 1440
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 47.8 bits (112), Expect = 1e-05
Identities = 92/364 (25%), Positives = 125/364 (34%), Gaps = 70/364 (19%)
Query: 5 TQGEGSRVKESEIRVRDASTSQGTQGLPENHQLPGEAGQDPSLKPSQGGTAL---LADPP 61
++GE R + + + G+ GLP + PG G K G L L P
Sbjct: 402 SKGERGRPGKDAMGTPGSPGCAGSPGLPGSPGPPGPPGDIVFRKGPPGDHGLPGYLGSPG 461
Query: 62 VSDFRPPQLLTCLGGPWCLCPLCSLQVEDPWLFSLLQPRDQLRLENQESCCVCGREDNSV 121
+ P+ G P LC C P L L + ++ S
Sbjct: 462 IPGVDGPK-----GEPGLLCTQCPYIPGPPGLPGLPGLHGVKGIPGRQGAAGLKGSPGSP 516
Query: 122 SMTGSIP-----PG--GRNGKKSLRMAASGPESGLWVEA-PGHRHRPRTPWPPRAGSAGS 173
TG +P PG G G K + PE + V PG R +P R G G
Sbjct: 517 GNTG-LPGFPGFPGAQGDPGLKGEKGETLQPEGQVGVPGDPGLRGQPG-----RKGLDGI 570
Query: 174 CETRPNEAHLAPPRGRVAGLDHLPHQALKAPQSPRAFP--PGGPGDAGTPMPKAGGLRKR 231
T P L P+G +A K Q P P PG PG AG P G +
Sbjct: 571 PGT-PGVKGLPGPKGELA------LSGEKGDQGPPGDPGSPGSPGPAGPAGPPGYGPQGE 623
Query: 232 PGITRTEGNP-SPRPPRRLTLPEDHPRLANARRRRKRALATRV-----------RPAPQ- 278
PG+ T+G P +P PP A R + +++T V P PQ
Sbjct: 624 PGLQGTQGVPGAPGPP------------GEAGPRGELSVSTPVPGPPGPPGPPGHPGPQG 671
Query: 279 ------------TSGRPGPLGGPAISVVLSPASQAP--EKGWSQSRGGARLGPEGQEPGR 324
G PGP G P I + P P ++G+ ++G + EPG
Sbjct: 672 PPGIPGSLGKCGDPGLPGPDGEPGIPGIGFPGPPGPKGDQGFPGTKGSLGCPGKMGEPGL 731
Query: 325 DQKP 328
KP
Sbjct: 732 PGKP 735
Score = 40.8 bits (94), Expect = 0.002
Identities = 54/202 (26%), Positives = 69/202 (34%), Gaps = 37/202 (18%)
Query: 129 PGGRNGKKSLRMAASGPESGLWVE-APGHRHRPRTPW-PPRAGSAGSCETRPNEAHLAPP 186
P G G+ L A GP + A G R P P P R G+ G A P
Sbjct: 1165 PAGEKGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGD----------AGP 1214
Query: 187 RGRVAGLDHLPHQALKAPQSPRAFPPGGPGDAGTPMPKAGGLRKRPGITRTEGNPSPRPP 246
RG P FP G PG G +P G R PG + G P P P
Sbjct: 1215 RG---------------PTGIEGFP-GPPGLPGAIIPGQTGNRGPPGSRGSPGAPGPPGP 1258
Query: 247 ---RRLTLPEDHPRLANARRRRKRALATRVRP-----APQTSGRPGPLGGPAISVVLSPA 298
+ + D + + + A + P AP T G PGP G P
Sbjct: 1259 PGSHVIGIKGDKGSMGHPGPKGPPGTAGDMGPPGRLGAPGTPGLPGPRGDPGFQGFPGVK 1318
Query: 299 SQAPEKGWSQSRG-GARLGPEG 319
+ G+ S G +GP+G
Sbjct: 1319 GEKGNPGFLGSIGPPGPIGPKG 1340
Score = 35.4 bits (80), Expect = 0.070
Identities = 44/173 (25%), Positives = 60/173 (34%), Gaps = 27/173 (15%)
Query: 154 PGHRHRPRTPWPPRAGSAGSCETRPNEAHLAPPRGRVA--GLDHLPHQ-ALKAPQSPRAF 210
PG + P P G+ G P E + G + GL LP + PR
Sbjct: 738 PGAKGEPAVAMPGGPGTPGF----PGERGNSGEHGEIGLPGLPGLPGTPGNEGLDGPRGD 793
Query: 211 P--PGGPGDAGTPMPKAGGLRKRPGITRTEGNPSPRPPRRLTLPEDHPRLANARRRRKRA 268
P PG PG+ G P G R G+ G + R T P+ P +
Sbjct: 794 PGQPGPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQGRRGKTGPKGDPGI---------- 843
Query: 269 LATRVRPAPQTSGRPGPLGGPAISVVLSPASQAPEKGWSQSRGGARLGPEGQE 321
P SG PG G P I ++G+ + G LGP G++
Sbjct: 844 ------PGLDRSGFPGETGSPGIPGHQGEMGPLGQRGYPGNPG--ILGPPGED 888
Score = 32.3 bits (72), Expect = 0.60
Identities = 34/115 (29%), Positives = 42/115 (36%), Gaps = 9/115 (7%)
Query: 212 PGGPGDAGTP-MPKAGGLRKRPGITRTEGNPSPRPPRRLTLPEDHPRLANARRRRKRALA 270
PG G+ G P MP GL+ PG G P PR T P L
Sbjct: 966 PGEKGNRGVPGMPGLKGLKGLPG---PAGPPGPRGDLGSTGNPGEPGLRGIPGSMGNMGM 1022
Query: 271 TRVRPAPQTSGRPGPLGGPAISVVLSPASQAPEKGWSQSRGGARLGPEGQ--EPG 323
+ T G PG G P + + E G+S+ G R GP G +PG
Sbjct: 1023 PGSKGKRGTLGFPGRAGRPGLPGIHGLQGDKGEPGYSE---GTRPGPPGPTGDPG 1074
Score = 30.8 bits (68), Expect = 1.7
Identities = 37/134 (27%), Positives = 44/134 (32%), Gaps = 27/134 (20%)
Query: 128 PPG--GRNGKKSLRMAASGPESGLWVEAPGHRHRPRTPWPPRA-GSAGSCETRPNEAHLA 184
PPG G G+ S+ GP PG P PP GS G C + L
Sbjct: 638 PPGEAGPRGELSVSTPVPGPPG-----PPGPPGHPGPQGPPGIPGSLGKC----GDPGLP 688
Query: 185 PPRGRVAGLDHLPHQALKAPQSPRAFP--------------PGGPGDAGTPMPKAGGLRK 230
P G G+ + P+ + FP PG PG G P K
Sbjct: 689 GPDGE-PGIPGIGFPGPPGPKGDQGFPGTKGSLGCPGKMGEPGLPGKPGLPGAKGEPAVA 747
Query: 231 RPGITRTEGNPSPR 244
PG T G P R
Sbjct: 748 MPGGPGTPGFPGER 761
Score = 30.8 bits (68), Expect = 1.7
Identities = 27/96 (28%), Positives = 37/96 (38%), Gaps = 19/96 (19%)
Query: 211 PPGGPGDAGTP-------MPKAGGLRKRPGITRTE---GNPSPRPPRRLTLPEDHPRL-- 258
PPG PG+ GTP +P G R PG + GNP P + + P L
Sbjct: 902 PPGPPGNPGTPGQRGSPGIPGVKGQRGTPGAKGEQGDKGNPGPSEISHVIGDKGEPGLKG 961
Query: 259 --ANARRRRKRAL-----ATRVRPAPQTSGRPGPLG 287
N + R + ++ P +G PGP G
Sbjct: 962 FAGNPGEKGNRGVPGMPGLKGLKGLPGPAGPPGPRG 997
Score = 29.6 bits (65), Expect = 3.9
Identities = 36/119 (30%), Positives = 44/119 (36%), Gaps = 24/119 (20%)
Query: 211 PPGGPGDAGTPMPKAGGLRKRPGITRTEGNPSPRPPRRLTLPEDHPRLANARRRRKRALA 270
P G PG G+P GLR PG +G+ R R K A+
Sbjct: 373 PSGPPGVPGSPGSSRPGLRGAPGWPGLKGSKGER-----------------GRPGKDAMG 415
Query: 271 TRVRP----APQTSGRPGPLGGPA-ISVVLSPASQAPEKGWSQSRGGARL-GPEGQEPG 323
T P +P G PGP G P I P G+ S G + GP+G EPG
Sbjct: 416 TPGSPGCAGSPGLPGSPGPPGPPGDIVFRKGPPGDHGLPGYLGSPGIPGVDGPKG-EPG 473
Score = 29.6 bits (65), Expect = 3.9
Identities = 33/122 (27%), Positives = 40/122 (32%), Gaps = 2/122 (1%)
Query: 117 EDNSVSMTGSIPPGGRNGKKSLRMAASGPESGLWVEAPGHRHRPRTPWPPRAGSAGSCET 176
E + GSI P G G K P + + PG P TP P
Sbjct: 1320 EKGNPGFLGSIGPPGPIGPKGPPGVRGDPGTLKIISLPGSPGPPGTPGEPGMQGEPGPPG 1379
Query: 177 RPNEAHLAPPRGRVAGLDHLPHQALKAPQSPRAFPPGGPGDAGTP-MPKAGGLRKRPGIT 235
P PRG+ G D P A + G PG AG+ +P G R G
Sbjct: 1380 PPGNLGPCGPRGK-PGKDGKPGTPGPAGEKGNKGSKGEPGPAGSDGLPGLKGKRGDSGSP 1438
Query: 236 RT 237
T
Sbjct: 1439 AT 1440
>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
Length = 1073
Score = 47.4 bits (111), Expect = 2e-05
Identities = 59/201 (29%), Positives = 69/201 (34%), Gaps = 40/201 (19%)
Query: 129 PGGRNGKKSLRMAASGPESGLWVEAPGHRHRPRTPWPPRAGSAGSCETRPNEAHLAPPRG 188
P G G K A P + APGH P PP + A P + +G
Sbjct: 378 PTGPPGAKGQEGAHGAPGAAGNPGAPGHVGAPGPSGPPGSVGAPGLRGTPGKDGERGEKG 437
Query: 189 RVAGLDHLPHQALKAPQSPRAFPPGGPGDAGTPMPKAGGLRKRPGITRTEGNPSPRPPRR 248
AG + P P PR G PG G P P G PG+ + G P P
Sbjct: 438 -AAGEEGSP-----GPVGPR----GDPGAPGLPGPPGKGKDGEPGLRGSPGLPGP----- 482
Query: 249 LTLPEDHPRLANARRRRKRALATR-VRPAPQTSGRPGPLGGPAISVVLSPASQAP--EKG 305
L T+ R AP G PG G P I V P P +KG
Sbjct: 483 --------------------LGTKGDRGAPGIPGSPGSRGDPGIGVAGPPGPSGPPGDKG 522
Query: 306 WSQSRGGARL-GPEGQEPGRD 325
SRG GP+G GRD
Sbjct: 523 SPGSRGLPGFPGPQG-PAGRD 542
Score = 45.4 bits (106), Expect = 7e-05
Identities = 51/187 (27%), Positives = 67/187 (35%), Gaps = 12/187 (6%)
Query: 154 PGHRHRPRTPWPPRA----GSAGSCETRPNEAHLAPPRGR-VAGLDHLPHQALKAPQSPR 208
PG P P PP A G+AG + + PP + +GL +P + K + +
Sbjct: 638 PGFMGPPGNPGPPGADGIAGAAGPPGIQGSPGKEGPPGPQGPSGLPGIPGEEGKEGRDGK 697
Query: 209 AFPPGGPGDAGTP-MPKAGGLRKRPGITRTEGNPSPRPPRRLTLPEDHPRLANARRRRKR 267
PPG PG AG P +P G R PG G+ PR + P +
Sbjct: 698 PGPPGEPGKAGEPGLPGPEGARGPPGFKGHTGDSGAPGPRGESGAMGLPGQEGLPGKDGD 757
Query: 268 ALATRVRPAPQTSGRPGPLGGPAISVVLSPASQAPEKGWSQSRGG----ARLGPEGQ--E 321
T + G PG G P P+ +KG G LGP G E
Sbjct: 758 TGPTGPQGPQGPRGPPGKNGSPGSPGEPGPSGTPGQKGSKGENGSPGLPGFLGPRGPPGE 817
Query: 322 PGRDQKP 328
PG P
Sbjct: 818 PGEKGVP 824
Score = 31.2 bits (69), Expect = 1.3
Identities = 40/146 (27%), Positives = 49/146 (33%), Gaps = 32/146 (21%)
Query: 159 RPRTPWPP-------RAGSAGSCETRPNEAHLAPPRGRVA--------GLDHLPHQALKA 203
RP P PP RAG G RP + L P G + G P L+
Sbjct: 945 RPGPPGPPGKDGLPGRAGPMGE-PGRPGQGGLEGPSGPIGPKGERGAKGDPGAPGVGLRG 1003
Query: 204 PQSPRAFPPGGPGDAGTPMPKAGGLRKRPGITRTEGNPSPRPPRRLTLPEDHPRLANARR 263
P PG PG G P GL PGI +G T P HP L
Sbjct: 1004 EMGP----PGIPGQPGEPGYAKDGL---PGIPGPQGE---------TGPAGHPGLPGPPG 1047
Query: 264 RRKRALATRVRPAPQTSGRPGPLGGP 289
+ ++ + RPG + GP
Sbjct: 1048 PPGQCDPSQCAYFASLAARPGNVKGP 1073
Score = 30.8 bits (68), Expect = 1.7
Identities = 37/138 (26%), Positives = 51/138 (36%), Gaps = 31/138 (22%)
Query: 211 PPGGPGDAGTPMPKAGGLRKRPGITRTEGNPS-------PRPPRRLTLP---EDHPRLAN 260
PPGG G G P G + G+ +G P P PP + P + P +
Sbjct: 853 PPGGKGQPGD--PGIPGHKGHTGLMGPQGLPGENGPVGPPGPPGQPGFPGLRGESPSMET 910
Query: 261 ARR-----------RRKRALATRVRPA--PQTSGRPGPLGGPAISVVLSPASQAPEKGWS 307
RR R L ++ PA + GRPGP G P + A E G
Sbjct: 911 LRRLIQEELGKQLETRLAYLLAQMPPAYMKSSQGRPGPPGPPGKDGLPGRAGPMGEPG-R 969
Query: 308 QSRGGAR-----LGPEGQ 320
+GG +GP+G+
Sbjct: 970 PGQGGLEGPSGPIGPKGE 987
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 46.6 bits (109), Expect = 3e-05
Identities = 83/295 (28%), Positives = 102/295 (34%), Gaps = 65/295 (22%)
Query: 18 RVRDASTSQGTQG-LPENHQLPGEAGQDPSLKPSQGGTALLADPPVSDFRPPQLLTCLGG 76
R RDAS +G+ G P LP G+ S +P A PP PPQ GG
Sbjct: 422 RQRDASPGRGSHGQTPSPGALP--LGRQTSQQP--------AGPPAQQRPPPQ-----GG 466
Query: 77 PWCLCPLCSLQVEDPWLFSLLQPRDQLRLENQESCCVCGREDNSVSMTGS--------IP 128
P P Q + P L P+ Q L S T + P
Sbjct: 467 PPQPGP--GPQRQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAP 524
Query: 129 PGGRNGKKSLRMAASGPESGLWVEAPGHRHRPRTPWPPRAGSAGSCE-TRPNEAHLAPPR 187
P G++S R A GP + P R PP+A S P +A APP
Sbjct: 525 PTQGQGRQS-RPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPG 583
Query: 188 GRVA-GLDHLP-------HQALKAPQSPRAFPP-------GGPGDAGTPMPK-------- 224
G+ G P QA +A PR PP GPG AG P P+
Sbjct: 584 GQQRQGPPQKPPGPAGPTRQASQAGPVPRTGPPTTQQPRPSGPGPAGRPKPQLAQKPSQD 643
Query: 225 --------AGG-----LRKRPGITRTEGNPSPRPPRRLTLPEDHPRLANARRRRK 266
AGG L K +T P P PPR +L +D + R RK
Sbjct: 644 VPPPATAAAGGPPHPQLNKSQSLTNAFNLPEPAPPRP-SLSQDEVKAETIRSLRK 697
Score = 28.5 bits (62), Expect = 8.6
Identities = 43/163 (26%), Positives = 55/163 (33%), Gaps = 49/163 (30%)
Query: 206 SPRAFP--------PGGPGDAGTPMPKAGGLRKRPGITR----TEGNPSPR--------- 244
SP A P P GP P P+ G + PG R + P P+
Sbjct: 438 SPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQGPPLQQRPPPQGQQHLSGLG 497
Query: 245 PPRRLTLPEDHPRLANARRRRKRALATRVRPAPQTSGRP------GPLGGPAISVVLSPA 298
PP LP+ P +A ++ A++ P Q GR GP PA SP+
Sbjct: 498 PPAGSPLPQRLPSPTSAPQQP----ASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPS 553
Query: 299 SQ-----------------APEKGWSQSRGG-ARLGPEGQEPG 323
Q AP K GG R GP + PG
Sbjct: 554 PQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPG 596
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 46.2 bits (108), Expect = 4e-05
Identities = 65/213 (30%), Positives = 76/213 (35%), Gaps = 37/213 (17%)
Query: 128 PPGGRNGKKSLRMAASGPESGLWVEAPGHRHRPRTPWPPRA-------GSAGSCETRPNE 180
PPG R G+ + M GP+ PG P PP A G AG+ + P
Sbjct: 570 PPGAR-GQAGV-MGFPGPKGA--AGEPGKAGERGVPGPPGAVGPAGKDGEAGA-QGPPGP 624
Query: 181 AHLAPPRGRVAGLDHLPHQALKAPQSP--RAFPPGG---PGDAGTPMPK-AGGLRKRPGI 234
A A RG Q L P P A PG PGD G P P A G R PG
Sbjct: 625 AGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGE 684
Query: 235 TRTEGNPSPRPPRRLTLPEDHPRLANARRRRKRALATRVRPAPQTSGRPGPLGGPAISVV 294
+G P P PR AN A P G PG G P + +
Sbjct: 685 RGVQGPPGPAGPRG----------ANGAPGNDGAKGDAGAP-----GAPGSQGAPGLQGM 729
Query: 295 LSPASQAPEKGWSQSRGGARLGPEGQE--PGRD 325
A G RG A GP+G + PG+D
Sbjct: 730 PGERGAAGLPGPKGDRGDA--GPKGADGSPGKD 760
Score = 42.0 bits (97), Expect = 8e-04
Identities = 62/214 (28%), Positives = 77/214 (35%), Gaps = 30/214 (14%)
Query: 124 TGSIPPGGRNGKKSLRMAASGPESGLWVEAP-GHRHRPRTPWPP-RAGSAGS--CETRPN 179
TG P G G + A GP+ E P G R P P P AG AG+ + +P
Sbjct: 337 TGPAGPPGFPGAVGAKGEA-GPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPG 395
Query: 180 EAHLAPPRGRVAGLDHLPH-QALKAPQSPRAFPPGGPGDAGTPMPKAG----GLRKRPGI 234
G +AG P + PQ P PPG G++G P G + PG
Sbjct: 396 AKGANGAPG-IAGAPGFPGARGPSGPQGPGG-PPGPKGNSGEPGAPGSKGDTGAKGEPGP 453
Query: 235 TRTEGNPSPRPPRRLTLPEDHPRLANARRRRKRALATRVRPAPQTSGRPGPLGGPAISVV 294
+G P P R R T + P G PG G P V
Sbjct: 454 VGVQGPPGPAGEE------------GKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGV 501
Query: 295 LSPASQAPEKGWSQSRGGARLGPEGQEPGRDQKP 328
P A E+G S G A GP+G PG +P
Sbjct: 502 AGPKGPAGERG---SPGPA--GPKG-SPGEAGRP 529
Score = 35.8 bits (81), Expect = 0.054
Identities = 68/238 (28%), Positives = 82/238 (34%), Gaps = 55/238 (23%)
Query: 117 EDNSVSMTGSIPPGGRNGKKSLRMAASGPESGLWVEAPGHRHRPRTPWPPRAGSAGSCET 176
E V + G P G GK+ R GP +GL PG R P GS G
Sbjct: 450 EPGPVGVQGPPGPAGEEGKRGAR-GEPGP-TGL-PGPPGERGGP--------GSRGF--- 495
Query: 177 RPNEAHLAPPRGRVAGLDHLPHQALKAPQSPRAFP--PGGPGDAGTPMPKAGGLRKRPGI 234
P +A P+G + P P+ P G PG+AG +P A GL PG
Sbjct: 496 -PGADGVAGPKGPAG------ERGSPGPAGPKGSPGEAGRPGEAG--LPGAKGLTGSPGS 546
Query: 235 TRTEGNPSPRPPRRLTLPEDHPRLANARRRR--------KRALA----TRVRPAPQTSGR 282
+G P P P AR + K A R P G
Sbjct: 547 PGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGA 606
Query: 283 PGPLG-----------GPAISVVLSPASQAPEKGWSQSRGGARL-GPEGQEPGRDQKP 328
GP G GPA PA + E+G + S G L GP G PG KP
Sbjct: 607 VGPAGKDGEAGAQGPPGPA-----GPAGERGEQGPAGSPGFQGLPGPAG-PPGEAGKP 658
Score = 34.7 bits (78), Expect = 0.12
Identities = 59/236 (25%), Positives = 72/236 (30%), Gaps = 34/236 (14%)
Query: 116 REDNSVSMTGSIPPGGRNGKKSLRMAASGPESGLWVEAPGHRHRPRT---------PWPP 166
+ +S+ G + P G G A GP+ + PG P P PP
Sbjct: 170 KSTGGISVPGPMGPSGPRGLPG-PPGAPGPQG--FQGPPGEPGEPGASGPMGPRGPPGPP 226
Query: 167 -RAGSAGSCETRPNEAHLAPPRGRVAGLDHLPHQA-LKAPQSPRAFP--PGGPGDAGTPM 222
+ G G PP + G LP A L + R F G GDAG
Sbjct: 227 GKNGDDGEAGKPGRPGERGPPGPQ--GARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAG 284
Query: 223 PKAGGLRKRPGITRTEGNPSPRPPRRLTLPEDHPRLANARRRRKRALATRVRPAPQTSGR 282
PK PG G P PR L P R AT P +G
Sbjct: 285 PKG-----EPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGP 339
Query: 283 PGPLGGPAISVVLSPASQAPEKGWSQSRG----------GARLGPEGQEPGRDQKP 328
GP G P A +G +G GP G PG D +P
Sbjct: 340 AGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAG-NPGADGQP 394
Score = 33.5 bits (75), Expect = 0.27
Identities = 61/230 (26%), Positives = 72/230 (31%), Gaps = 38/230 (16%)
Query: 128 PPGGRNGKKSLRMAASGPESGLWVEAPGHRHRPRTPWPPRA-GSAGSCETRPNEAHLAPP 186
PPG R G S + +G A G R P P + G AG RP EA L
Sbjct: 483 PPGERGGPGSRGFPGADGVAGPKGPA-GERGSPGPAGPKGSPGEAG----RPGEAGLPGA 537
Query: 187 RGRVA-----GLDHLPHQALKAPQSPRAFPPGGPGDAGTP----MPKAGGLRKRPGITRT 237
+G G D A Q R PPG PG G P G PG
Sbjct: 538 KGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGE 597
Query: 238 EGNPSPR----------------PPRRLTLPEDHPRLANARRRRKRALATRVRPAPQTSG 281
G P P PP + A + L P P +G
Sbjct: 598 RGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGP-PGEAG 656
Query: 282 RPGPLGGPAISVVLSPASQAPEKGWSQSRG----GARLGPEGQE--PGRD 325
+PG G P P+ E+G+ RG GP G PG D
Sbjct: 657 KPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGND 706
Score = 30.4 bits (67), Expect = 2.3
Identities = 50/211 (23%), Positives = 62/211 (29%), Gaps = 59/211 (27%)
Query: 124 TGSIPPGGRNGKKSLRMAASGPESGLWVEAPGHRHRPRTPWPPRAGSAGSCETRPNEAHL 183
+G P G G R P + PG +P P A P A
Sbjct: 787 SGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGP 846
Query: 184 APPRGRVAGLDHLPHQALKAPQSP-----------RAFPPGGPGDAGTPMPKAGGLRKRP 232
A P G + + + + P R PPG G+AG P P P
Sbjct: 847 AGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGP--------P 898
Query: 233 GITRTEGNPSPRPPRRLTLPEDHPRLANARRRRKRALATRVRPAPQTSGRPGPLGGPAIS 292
G EG PR E P +GRPG +G P
Sbjct: 899 GPAGKEGGKGPR-------GETGP-----------------------AGRPGEVGPP--- 925
Query: 293 VVLSPASQAPEKGWSQSRGGARL----GPEG 319
P A EKG + G A GP+G
Sbjct: 926 ---GPPGPAGEKGSPGADGPAGAPGTPGPQG 953
Score = 30.0 bits (66), Expect = 3.0
Identities = 48/187 (25%), Positives = 58/187 (31%), Gaps = 41/187 (21%)
Query: 125 GSIPPGGRNGKKSLRMAASGPESGLWVEAPGHRHRPRTPWPPRA--GSAGSCETRPNEAH 182
G + P G++G + +GP P P P PR G G R + H
Sbjct: 1055 GPVGPAGKSGDRG----ETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGH 1110
Query: 183 -----LAPPRGRVAGLDHLPHQALKAPQSPRAFPPGGPGDAGTPMPKAGGLRKRPGITRT 237
L P G P PR G PG AG P GL PG
Sbjct: 1111 RGFSGLQGPPGPPGSPGEQGPSGASGPAGPR----GPPGSAGAP--GKDGLNGLPGPI-- 1162
Query: 238 EGNPSPRPPRRLTLPEDHPRLANARRRRKRALATRVRPAPQTSGRPGPLGGPAISVVLSP 297
G P PR + A V P P G PGP G P+ S
Sbjct: 1163 -GPPGPRG--------------------RTGDAGPVGP-PGPPGPPGPPGPPSAGFDFSF 1200
Query: 298 ASQAPEK 304
Q P++
Sbjct: 1201 LPQPPQE 1207
Score = 29.3 bits (64), Expect = 5.0
Identities = 55/200 (27%), Positives = 63/200 (31%), Gaps = 27/200 (13%)
Query: 129 PGGRNGKKSLRMAASGPESGLWVEAPGHRHRPRTPWPPRAGSAGSCETRPNEAHLAPPRG 188
P G GK+ GP A G R P PP G AG E AP
Sbjct: 978 PSGEPGKQ-------GPSG-----ASGERGPPGPMGPP--GLAGPPGESGREG--APGAE 1021
Query: 189 RVAGLDHLPHQALKAPQSPRAFPPGGPGDAGTPMPKA-GGLRKRPGITRTEGNPSPRPPR 247
G D P ++ A PPG PG G P P G G T G P P
Sbjct: 1022 GSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPV 1081
Query: 248 RLTLPEDHPRLANARRRRKRALATRVRPAPQTSGRPGPLGGPAISVVLSPASQAPEKGWS 307
P + ++ SG GP G P SP Q P +
Sbjct: 1082 GARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPG-----SPGEQGP--SGA 1134
Query: 308 QSRGGARLGPEGQ--EPGRD 325
G R GP G PG+D
Sbjct: 1135 SGPAGPR-GPPGSAGAPGKD 1153
>gi|239752280 PREDICTED: similar to family with sequence similarity
48, member B2 [Homo sapiens]
Length = 779
Score = 46.2 bits (108), Expect = 4e-05
Identities = 78/323 (24%), Positives = 120/323 (37%), Gaps = 38/323 (11%)
Query: 1 MNTDTQGEGSRVKES-EIRVRDASTSQGT-QGLPENHQLPGEAGQDPSLKPSQGGTALLA 58
++T Q E +V + E+ + A + T +G P + +P E + K Q TA A
Sbjct: 226 VSTSGQKEERKVGQPCELNITKAGSCVDTWKGRPCDLAVPSEVDVEKLAKGYQSVTA--A 283
Query: 59 DP-----PVSDFRPPQLLTCLGG--PWCLCPLCSLQVEDPWLFSLLQPRDQLRLENQESC 111
DP P + P G W P DP L ++PR + R ++Q+S
Sbjct: 284 DPQLPVWPAQEVEDPFRHAWEAGCQAWDTKPNIMQSFNDPLLCGKIRPRKKARQKSQKSP 343
Query: 112 CVCGREDNSVSM-TGSIPPGGR-------------NGKKSLRMAASGPESGLWVEAPGHR 157
+D+S + GS GR G + ++SGP S + +
Sbjct: 344 WQPFPDDHSACLRPGSETDAGRAVSQAQESVQSKVKGPGKMSHSSSGPASVSQLSSWKTP 403
Query: 158 HRPRTPWPPRAGSAGSCETRPNEAHLAPPRGRVAGLDHLPHQALKAPQSPRAFPPGGP-- 215
+P W + S + P L G+++ + P Q +P R FP P
Sbjct: 404 EQPDPVWVQSSVSGKGEKHPPPRTQLPSSSGKISSGNSFPPQQAGSPLK-RPFPAAAPAV 462
Query: 216 ---GDAGTPMPKAGGLRKRPGITRTEGNPSPRPPRRLTLPEDHPRLANARRRRKRA-LAT 271
A P P A + G +P ++ ++P L A RRR A T
Sbjct: 463 AAAAPAPAPAPAAAPALAAAAVAAAAGGAAPSHSQKPSVP-----LIKASRRRPAAGRPT 517
Query: 272 R-VRPAPQTSGRPGPLGGPAISV 293
R V+ AP R G G A +V
Sbjct: 518 RFVKIAPAIQVRTGSTGLKATNV 540
>gi|210032463 family with sequence similarity 48, member B2 [Homo
sapiens]
Length = 817
Score = 46.2 bits (108), Expect = 4e-05
Identities = 78/323 (24%), Positives = 120/323 (37%), Gaps = 38/323 (11%)
Query: 1 MNTDTQGEGSRVKES-EIRVRDASTSQGT-QGLPENHQLPGEAGQDPSLKPSQGGTALLA 58
++T Q E +V + E+ + A + T +G P + +P E + K Q TA A
Sbjct: 264 VSTSGQKEERKVGQPCELNITKAGSCVDTWKGRPCDLAVPSEVDVEKLAKGYQSVTA--A 321
Query: 59 DP-----PVSDFRPPQLLTCLGG--PWCLCPLCSLQVEDPWLFSLLQPRDQLRLENQESC 111
DP P + P G W P DP L ++PR + R ++Q+S
Sbjct: 322 DPQLPVWPAQEVEDPFRHAWEAGCQAWDTKPNIMQSFNDPLLCGKIRPRKKARQKSQKSP 381
Query: 112 CVCGREDNSVSM-TGSIPPGGR-------------NGKKSLRMAASGPESGLWVEAPGHR 157
+D+S + GS GR G + ++SGP S + +
Sbjct: 382 WQPFPDDHSACLRPGSETDAGRAVSQAQESVQSKVKGPGKMSHSSSGPASVSQLSSWKTP 441
Query: 158 HRPRTPWPPRAGSAGSCETRPNEAHLAPPRGRVAGLDHLPHQALKAPQSPRAFPPGGP-- 215
+P W + S + P L G+++ + P Q +P R FP P
Sbjct: 442 EQPDPVWVQSSVSGKGEKHPPPRTQLPSSSGKISSGNSFPPQQAGSPLK-RPFPAAAPAV 500
Query: 216 ---GDAGTPMPKAGGLRKRPGITRTEGNPSPRPPRRLTLPEDHPRLANARRRRKRA-LAT 271
A P P A + G +P ++ ++P L A RRR A T
Sbjct: 501 AAAAPAPAPAPAAAPALAAAAVAAAAGGAAPSHSQKPSVP-----LIKASRRRPAAGRPT 555
Query: 272 R-VRPAPQTSGRPGPLGGPAISV 293
R V+ AP R G G A +V
Sbjct: 556 RFVKIAPAIQVRTGSTGLKATNV 578
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 45.8 bits (107), Expect = 5e-05
Identities = 51/202 (25%), Positives = 76/202 (37%), Gaps = 22/202 (10%)
Query: 124 TGSIPPGGRNGKKSLRMAASGPESGLWVEAPGHRHRPRTPWPPRAGSAGS--CETRPNEA 181
T PG + + R A+G E GL AP R RP T P ++ S+ S T P+ A
Sbjct: 164 TSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPA 223
Query: 182 HLAPPRGRVAGLDHLPHQALKAPQSPRAFPP-GGPGDAGTPMPKAGGLRKRPGITRTEGN 240
P GL ++L + +P + P GP GTP A + +P +
Sbjct: 224 ARRRPSAG-GGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRP 282
Query: 241 PSPRPPRRLTLPEDHPRLAN--ARRRRKRALATRVRP----------------APQTSGR 282
P PPR+ P P ++ A AL ++ P P
Sbjct: 283 PQVTPPRKDAAPALGPLSSSPLATPSPSAALQSQAPPTLPATPHSSSLTCQLATPLPLAP 342
Query: 283 PGPLGGPAISVVLSPASQAPEK 304
P P P++ + SP + P +
Sbjct: 343 PSPSAPPSLQTLPSPPATPPSQ 364
Score = 35.4 bits (80), Expect = 0.070
Identities = 45/180 (25%), Positives = 63/180 (35%), Gaps = 22/180 (12%)
Query: 141 AASGPESGLWVEAPGHRHRPRTPWPPRAGSAGSCETRPNEAHLAPPRGRVAG---LDHLP 197
A SGP + AP H P P P + + P AP G ++ P
Sbjct: 253 ARSGPSARGTPRAPAH---PSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSP 309
Query: 198 HQALKAPQSPRAFPPGGPGDA-----GTPMPKAGGLRKRPGITRTEGNPSPRPPRRLTLP 252
AL++ Q+P P + TP+P A P +T +P PP + T
Sbjct: 310 SAALQS-QAPPTLPATPHSSSLTCQLATPLPLAPPSPSAPPSLQTLPSPPATPPSQATTS 368
Query: 253 EDHPRL-ANARRRRKRALATRVRPAPQT---------SGRPGPLGGPAISVVLSPASQAP 302
P L A L+ P PQ P P P +S + +P+ QAP
Sbjct: 369 LGSPTLQATHSFLPSPPLSPLATPPPQAPPALALPPLQAPPSPPASPPLSPLATPSPQAP 428
Score = 34.3 bits (77), Expect = 0.16
Identities = 35/138 (25%), Positives = 48/138 (34%), Gaps = 8/138 (5%)
Query: 165 PPRAGSAGSCETRPNEAHLAPPRGRVAGLDHLPHQALKAPQSPRAFPPGGPGDAGTPMPK 224
PP + S +T P+ P + + L L+A S PP P TP P+
Sbjct: 342 PPSPSAPPSLQTLPSPPATPPSQATTS----LGSPTLQATHSFLPSPPLSP--LATPPPQ 395
Query: 225 AGGLRKRPGITRTEGNPSPRPPRRLTLPEDHPRLANARRRRKRALATRVRPAPQTSGRPG 284
A P + P+ P L P P+ NA P+P
Sbjct: 396 APPALALPPLQAPPSPPASPPLSPLATPS--PQAPNALAVHLLQAPFSPPPSPPVQAPFS 453
Query: 285 PLGGPAISVVLSPASQAP 302
P P +S +P SQAP
Sbjct: 454 PPASPPVSPSATPPSQAP 471
Score = 34.3 bits (77), Expect = 0.16
Identities = 42/152 (27%), Positives = 59/152 (38%), Gaps = 16/152 (10%)
Query: 160 PRTPWPPRAGSAGSCETRPNEAHLAPPRGRVAGLDHLPHQA--------LKAPQSPRAFP 211
P TP S GS + + L P ++ L P QA L+AP SP A P
Sbjct: 358 PATPPSQATTSLGSPTLQATHSFLPSPP--LSPLATPPPQAPPALALPPLQAPPSPPASP 415
Query: 212 PGGPGDAGTPMPKAGGLRKRPGITRTEGNPSPRPPRRLTL-PEDHPRLANARRRRKRALA 270
P P TP P+A + + +P P PP + P P ++ + +A
Sbjct: 416 PLSP--LATPSPQAPNALA-VHLLQAPFSPPPSPPVQAPFSPPASPPVSPSATPPSQAPP 472
Query: 271 TRVRPAPQTSGRPGPLGGPAISVVLSPASQAP 302
+ P Q P P P +S +P QAP
Sbjct: 473 SLAAPPLQVP--PSPPASPPMSPSATPPPQAP 502
Score = 33.5 bits (75), Expect = 0.27
Identities = 82/320 (25%), Positives = 104/320 (32%), Gaps = 43/320 (13%)
Query: 38 PGEAGQDPSLKPSQGGTALLADPPVSDFR-PPQLLTCLGGPWCLC---PLCSLQVEDPWL 93
P PS P LA PP+ + PPQ L P P S + P+
Sbjct: 486 PASPPMSPSATPPPQAPPPLAAPPLQLAKPPPQAPPALATPPLQALPSPPASFPGQAPFS 545
Query: 94 FSLLQPRDQLRLENQESCCVCGREDNSVSMTGSIPPGGRNGKKSLRMAASGPESGL---- 149
S P L ++ V V + PP + R GP++ +
Sbjct: 546 PSASLPMSPLATPPPQAPPVLAAPLLQVPPS---PPASPTLQAPRRPPTPGPDTSVSGPR 602
Query: 150 --WVEAPGHRHRP-RTP-----WPPRAGSAGSCETRPNE-----------AHLAPPRGRV 190
APG P R+P P AG + S + P E A +PP
Sbjct: 603 LTLALAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDSGPEGGAAASPPPDAE 662
Query: 191 AGLDHLPHQALKAPQSPRAFPPGGPGDAGTPMPKAGGLRKRPG---ITRTEGNPSPRPPR 247
H P + P P AF G PG A P P A G G I TEG S P
Sbjct: 663 LAACH-PAAWSRGPAPPLAF-RGAPG-APLPWPPATGPGSADGLCTIYETEGPESATPAP 719
Query: 248 RLTLPEDHPRLANARRRRKRALATRVRPAPQTSGRPGPLGGPAISVVLSPASQ----APE 303
P P + + R Q PLG SVV S+ A
Sbjct: 720 GALDPGPSPGTSGGKAAAGAGAGASSRSPKQARLGELPLGALQASVVQHLLSRTLLLAAA 779
Query: 304 KGWSQSRGGARLGPEGQEPG 323
+G + GG+ GP G E G
Sbjct: 780 EG---AAGGSGGGPGGAEGG 796
Score = 29.6 bits (65), Expect = 3.9
Identities = 42/180 (23%), Positives = 60/180 (33%), Gaps = 32/180 (17%)
Query: 165 PPRAGSAGSCETRPNEAHLAPPRGRVAGLDHLPHQALKAPQSPRAFPP--------GGPG 216
PP + T P++A PP L P P SP A PP P
Sbjct: 454 PPASPPVSPSATPPSQA---PPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPL 510
Query: 217 DAGTPMPKAGGLRKRPGITRTEGNPS--------------PRPPRRLTLPEDHPRLANAR 262
P P+A P + P+ P P P+ P LA
Sbjct: 511 QLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPL 570
Query: 263 RRRKRAL-ATRVRPAPQTSGRPGP---LGGPAISVVLSPASQAPEKGWSQSRGGARLGPE 318
+ + A+ AP+ PGP + GP +++ L+P P S+S GP+
Sbjct: 571 LQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPP---SRSPSSTLSGPD 627
>gi|50511941 EMI domain containing 1 [Homo sapiens]
Length = 443
Score = 45.8 bits (107), Expect = 5e-05
Identities = 54/175 (30%), Positives = 63/175 (36%), Gaps = 31/175 (17%)
Query: 125 GSIPPGGRNGKKSLRMAASGPESGLWVEAPGHRHRPRTPWPPRAGSAGSCETRPNEAHLA 184
GS P G G + P V PG R P P PP G G A +
Sbjct: 214 GSRGPMGMRGPPGPQGPPGSPGRAGAVGTPGERGPPGPPGPP--GPPGP------PAPVG 265
Query: 185 PPRGRVA--GLDHLPHQALKA----PQSPRAFPPGGPGDAGTPMPKAGGLRKRPGITRTE 238
PP R++ G L + + PQ P PPG PG G P P G PG
Sbjct: 266 PPHARISQHGDPLLSNTFTETNNHWPQGPTG-PPGPPGPMGPPGPP--GPTGVPGSPGHI 322
Query: 239 GNPSPRPPRRLTLPEDHPRLANARRRRKRALATRVRPAPQTS----GRPGPLGGP 289
G P P P+ ++ HP K R P PQ S G PGP G P
Sbjct: 323 GPPGPTGPKGIS---GHP-------GEKGERGLRGEPGPQGSAGQRGEPGPKGDP 367
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 45.4 bits (106), Expect = 7e-05
Identities = 61/216 (28%), Positives = 83/216 (38%), Gaps = 61/216 (28%)
Query: 126 SIPPGGRNGKKSLRMAASGPESGLWVEAPGHRHRPRTPWPPRAGSAGSCETRPNEAHLAP 185
SI G G+K + + E G+ VE P P AG AG + P
Sbjct: 427 SINGHGAYGEKGQKGEPAVVEPGMLVEGP----------PGPAGPAGI---------MGP 467
Query: 186 PRGRVAGLDHLPHQALKAPQSPRAFPPGGPGDAGTPMPKAGGLRKRPGITRTEGNPSPRP 245
P L+ P P PG PGD G P RPG+ +G P P P
Sbjct: 468 P-------------GLQGPTGP----PGDPGDRGPP--------GRPGLPGADGLPGP-P 501
Query: 246 PRRLTLPEDH-----------PRLANARRRRKRA-LATRVRPAPQ-TSGRPGPLGGPAIS 292
L LP + + A A+ ++A +A R P P +GRPGP+GGP S
Sbjct: 502 GTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSS 561
Query: 293 VVLSPASQAPEKGWSQSRGGARLGPEGQEPGRDQKP 328
+ +G +G GP G +PG+ +P
Sbjct: 562 GAKGESGDPGPQGPRGVQGPP--GPTG-KPGKRGRP 594
Score = 36.2 bits (82), Expect = 0.041
Identities = 62/226 (27%), Positives = 79/226 (34%), Gaps = 42/226 (18%)
Query: 121 VSMTGSIPPGGRNGKKSLRMAAS--GPESGLWVEAPGHRHRPRTPWPPRAGSAGSCETR- 177
+ +TG P G G + + GP+ V+ P T P + G G+ R
Sbjct: 546 MGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGP----TGKPGKRGRPGADGGRG 601
Query: 178 -PNEAHLAPPRGRVAGLDHLP----HQALKAPQSPRAFPPGGPGDAGTPMPKAGGLRKRP 232
P E RG GL LP H+ + PQ P PG PGD G+R
Sbjct: 602 MPGEPGAKGDRG-FDGLPGLPGDKGHRGERGPQGP----PGPPGD--------DGMRGED 648
Query: 233 GITRTEGNPSPRPPRRLTLPEDHPRL--------ANARRRRKRALATRVRPAPQ-TSGRP 283
G G P PR L P P + K + + P P G P
Sbjct: 649 GEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNP 708
Query: 284 GPLGGPAISVVLSPASQAPEKGWSQSRGGARL----GPEGQEPGRD 325
GP G P + P EKG G A L GP G PG++
Sbjct: 709 GPQGLPGPQGPIGPPG---EKGPQGKPGLAGLPGADGPPG-HPGKE 750
Score = 32.7 bits (73), Expect = 0.46
Identities = 46/173 (26%), Positives = 54/173 (31%), Gaps = 18/173 (10%)
Query: 154 PGHRHRPRTPWPP-RAGSAGSCETRPNEAHLAPPRGRVAGLDHLPHQALKAPQSPRAFPP 212
PG P P PP G AG G G D P Q S A PP
Sbjct: 1320 PGPVGFPGDPGPPGEPGPAGQDGV-----------GGDKGEDGDPGQPGPPGPSGEAGPP 1368
Query: 213 GGPGDAGTPMPKAG----GLRKRPGITRTEGNPSPRPPRRLTLPEDHPRLANARRRRKRA 268
G PG G P G + G EG P P P P R
Sbjct: 1369 GPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPV 1428
Query: 269 LATRVRPAPQTSGRPGPLGGPAISVVLSPASQAPEKGWSQSRGGARLGPEGQE 321
+ A G PGP+G P + + EKG G +GP G++
Sbjct: 1429 GEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIG--LIGPPGEQ 1479
Score = 29.6 bits (65), Expect = 3.9
Identities = 59/230 (25%), Positives = 70/230 (30%), Gaps = 51/230 (22%)
Query: 131 GRNGKKSLRMAAS--GPESGLWVEAPGHRHRPRTPWPPRAGSAGSCETRPNEAHLAPPRG 188
G NG+K R A GP P R P G G T + PP
Sbjct: 874 GANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGP----TGKPGPKGTSGGDGPPGPPGE 929
Query: 189 RVAGLDHLPHQALKAPQSPRAFP-----PGGPGDAGTP----------------MPKAGG 227
R + PQ P FP PG PG G P P GG
Sbjct: 930 R----------GPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGG 979
Query: 228 LRKRPGITRT------EGNPSPR-PPRRLTLPEDHPRLANARRRRKRALATRVRPA---- 276
+ G T G+P P PP LP + + ++ + PA
Sbjct: 980 VVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRG 1039
Query: 277 -PQTSGRPGPLGGPAISVVLSPASQAPEKGWSQSRGGA-RLGPEGQEPGR 324
P G PG G P + P G RG A GP G PGR
Sbjct: 1040 FPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGL-PGR 1088
Score = 28.5 bits (62), Expect = 8.6
Identities = 34/120 (28%), Positives = 43/120 (35%), Gaps = 13/120 (10%)
Query: 211 PPGGPGDAGTPMPKAG--GLRKRPGITRTEGNPSPRPPRRLTLPEDHPRLANARRRRKRA 268
PPG PG+ G P AG G + PG G P R P A K
Sbjct: 1001 PPGPPGEQGLP-GAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPG-AQGAPGLKGG 1058
Query: 269 LATRVRPAP-------QTSGRPGPLGGPAISVVLSPASQAPEKGWSQSRGGARLGPEGQE 321
+ P P ++G GP+G P P A EKG +G GP G++
Sbjct: 1059 EGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQ--GPAGRD 1116
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 45.4 bits (106), Expect = 7e-05
Identities = 61/216 (28%), Positives = 83/216 (38%), Gaps = 61/216 (28%)
Query: 126 SIPPGGRNGKKSLRMAASGPESGLWVEAPGHRHRPRTPWPPRAGSAGSCETRPNEAHLAP 185
SI G G+K + + E G+ VE P P AG AG + P
Sbjct: 376 SINGHGAYGEKGQKGEPAVVEPGMLVEGP----------PGPAGPAGI---------MGP 416
Query: 186 PRGRVAGLDHLPHQALKAPQSPRAFPPGGPGDAGTPMPKAGGLRKRPGITRTEGNPSPRP 245
P L+ P P PG PGD G P RPG+ +G P P P
Sbjct: 417 P-------------GLQGPTGP----PGDPGDRGPP--------GRPGLPGADGLPGP-P 450
Query: 246 PRRLTLPEDH-----------PRLANARRRRKRA-LATRVRPAPQ-TSGRPGPLGGPAIS 292
L LP + + A A+ ++A +A R P P +GRPGP+GGP S
Sbjct: 451 GTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSS 510
Query: 293 VVLSPASQAPEKGWSQSRGGARLGPEGQEPGRDQKP 328
+ +G +G GP G +PG+ +P
Sbjct: 511 GAKGESGDPGPQGPRGVQGPP--GPTG-KPGKRGRP 543
Score = 36.2 bits (82), Expect = 0.041
Identities = 62/226 (27%), Positives = 79/226 (34%), Gaps = 42/226 (18%)
Query: 121 VSMTGSIPPGGRNGKKSLRMAAS--GPESGLWVEAPGHRHRPRTPWPPRAGSAGSCETR- 177
+ +TG P G G + + GP+ V+ P T P + G G+ R
Sbjct: 495 MGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGP----TGKPGKRGRPGADGGRG 550
Query: 178 -PNEAHLAPPRGRVAGLDHLP----HQALKAPQSPRAFPPGGPGDAGTPMPKAGGLRKRP 232
P E RG GL LP H+ + PQ P PG PGD G+R
Sbjct: 551 MPGEPGAKGDRG-FDGLPGLPGDKGHRGERGPQGP----PGPPGD--------DGMRGED 597
Query: 233 GITRTEGNPSPRPPRRLTLPEDHPRL--------ANARRRRKRALATRVRPAPQ-TSGRP 283
G G P PR L P P + K + + P P G P
Sbjct: 598 GEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNP 657
Query: 284 GPLGGPAISVVLSPASQAPEKGWSQSRGGARL----GPEGQEPGRD 325
GP G P + P EKG G A L GP G PG++
Sbjct: 658 GPQGLPGPQGPIGPPG---EKGPQGKPGLAGLPGADGPPG-HPGKE 699
Score = 32.7 bits (73), Expect = 0.46
Identities = 46/173 (26%), Positives = 54/173 (31%), Gaps = 18/173 (10%)
Query: 154 PGHRHRPRTPWPP-RAGSAGSCETRPNEAHLAPPRGRVAGLDHLPHQALKAPQSPRAFPP 212
PG P P PP G AG G G D P Q S A PP
Sbjct: 1269 PGPVGFPGDPGPPGEPGPAGQDGV-----------GGDKGEDGDPGQPGPPGPSGEAGPP 1317
Query: 213 GGPGDAGTPMPKAG----GLRKRPGITRTEGNPSPRPPRRLTLPEDHPRLANARRRRKRA 268
G PG G P G + G EG P P P P R
Sbjct: 1318 GPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPV 1377
Query: 269 LATRVRPAPQTSGRPGPLGGPAISVVLSPASQAPEKGWSQSRGGARLGPEGQE 321
+ A G PGP+G P + + EKG G +GP G++
Sbjct: 1378 GEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIG--LIGPPGEQ 1428
Score = 29.6 bits (65), Expect = 3.9
Identities = 59/230 (25%), Positives = 70/230 (30%), Gaps = 51/230 (22%)
Query: 131 GRNGKKSLRMAAS--GPESGLWVEAPGHRHRPRTPWPPRAGSAGSCETRPNEAHLAPPRG 188
G NG+K R A GP P R P G G T + PP
Sbjct: 823 GANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGP----TGKPGPKGTSGGDGPPGPPGE 878
Query: 189 RVAGLDHLPHQALKAPQSPRAFP-----PGGPGDAGTP----------------MPKAGG 227
R + PQ P FP PG PG G P P GG
Sbjct: 879 R----------GPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGG 928
Query: 228 LRKRPGITRT------EGNPSPR-PPRRLTLPEDHPRLANARRRRKRALATRVRPA---- 276
+ G T G+P P PP LP + + ++ + PA
Sbjct: 929 VVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRG 988
Query: 277 -PQTSGRPGPLGGPAISVVLSPASQAPEKGWSQSRGGA-RLGPEGQEPGR 324
P G PG G P + P G RG A GP G PGR
Sbjct: 989 FPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGL-PGR 1037
Score = 28.5 bits (62), Expect = 8.6
Identities = 34/120 (28%), Positives = 43/120 (35%), Gaps = 13/120 (10%)
Query: 211 PPGGPGDAGTPMPKAG--GLRKRPGITRTEGNPSPRPPRRLTLPEDHPRLANARRRRKRA 268
PPG PG+ G P AG G + PG G P R P A K
Sbjct: 950 PPGPPGEQGLP-GAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPG-AQGAPGLKGG 1007
Query: 269 LATRVRPAP-------QTSGRPGPLGGPAISVVLSPASQAPEKGWSQSRGGARLGPEGQE 321
+ P P ++G GP+G P P A EKG +G GP G++
Sbjct: 1008 EGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQ--GPAGRD 1065
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 45.4 bits (106), Expect = 7e-05
Identities = 61/216 (28%), Positives = 83/216 (38%), Gaps = 61/216 (28%)
Query: 126 SIPPGGRNGKKSLRMAASGPESGLWVEAPGHRHRPRTPWPPRAGSAGSCETRPNEAHLAP 185
SI G G+K + + E G+ VE P P AG AG + P
Sbjct: 415 SINGHGAYGEKGQKGEPAVVEPGMLVEGP----------PGPAGPAGI---------MGP 455
Query: 186 PRGRVAGLDHLPHQALKAPQSPRAFPPGGPGDAGTPMPKAGGLRKRPGITRTEGNPSPRP 245
P L+ P P PG PGD G P RPG+ +G P P P
Sbjct: 456 P-------------GLQGPTGP----PGDPGDRGPP--------GRPGLPGADGLPGP-P 489
Query: 246 PRRLTLPEDH-----------PRLANARRRRKRA-LATRVRPAPQ-TSGRPGPLGGPAIS 292
L LP + + A A+ ++A +A R P P +GRPGP+GGP S
Sbjct: 490 GTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSS 549
Query: 293 VVLSPASQAPEKGWSQSRGGARLGPEGQEPGRDQKP 328
+ +G +G GP G +PG+ +P
Sbjct: 550 GAKGESGDPGPQGPRGVQGPP--GPTG-KPGKRGRP 582
Score = 36.2 bits (82), Expect = 0.041
Identities = 62/226 (27%), Positives = 79/226 (34%), Gaps = 42/226 (18%)
Query: 121 VSMTGSIPPGGRNGKKSLRMAAS--GPESGLWVEAPGHRHRPRTPWPPRAGSAGSCETR- 177
+ +TG P G G + + GP+ V+ P T P + G G+ R
Sbjct: 534 MGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGP----TGKPGKRGRPGADGGRG 589
Query: 178 -PNEAHLAPPRGRVAGLDHLP----HQALKAPQSPRAFPPGGPGDAGTPMPKAGGLRKRP 232
P E RG GL LP H+ + PQ P PG PGD G+R
Sbjct: 590 MPGEPGAKGDRG-FDGLPGLPGDKGHRGERGPQGP----PGPPGD--------DGMRGED 636
Query: 233 GITRTEGNPSPRPPRRLTLPEDHPRL--------ANARRRRKRALATRVRPAPQ-TSGRP 283
G G P PR L P P + K + + P P G P
Sbjct: 637 GEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNP 696
Query: 284 GPLGGPAISVVLSPASQAPEKGWSQSRGGARL----GPEGQEPGRD 325
GP G P + P EKG G A L GP G PG++
Sbjct: 697 GPQGLPGPQGPIGPPG---EKGPQGKPGLAGLPGADGPPG-HPGKE 738
Score = 32.7 bits (73), Expect = 0.46
Identities = 46/173 (26%), Positives = 54/173 (31%), Gaps = 18/173 (10%)
Query: 154 PGHRHRPRTPWPP-RAGSAGSCETRPNEAHLAPPRGRVAGLDHLPHQALKAPQSPRAFPP 212
PG P P PP G AG G G D P Q S A PP
Sbjct: 1308 PGPVGFPGDPGPPGEPGPAGQDGV-----------GGDKGEDGDPGQPGPPGPSGEAGPP 1356
Query: 213 GGPGDAGTPMPKAG----GLRKRPGITRTEGNPSPRPPRRLTLPEDHPRLANARRRRKRA 268
G PG G P G + G EG P P P P R
Sbjct: 1357 GPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPV 1416
Query: 269 LATRVRPAPQTSGRPGPLGGPAISVVLSPASQAPEKGWSQSRGGARLGPEGQE 321
+ A G PGP+G P + + EKG G +GP G++
Sbjct: 1417 GEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIG--LIGPPGEQ 1467
Score = 29.6 bits (65), Expect = 3.9
Identities = 59/230 (25%), Positives = 70/230 (30%), Gaps = 51/230 (22%)
Query: 131 GRNGKKSLRMAAS--GPESGLWVEAPGHRHRPRTPWPPRAGSAGSCETRPNEAHLAPPRG 188
G NG+K R A GP P R P G G T + PP
Sbjct: 862 GANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGP----TGKPGPKGTSGGDGPPGPPGE 917
Query: 189 RVAGLDHLPHQALKAPQSPRAFP-----PGGPGDAGTP----------------MPKAGG 227
R + PQ P FP PG PG G P P GG
Sbjct: 918 R----------GPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGG 967
Query: 228 LRKRPGITRT------EGNPSPR-PPRRLTLPEDHPRLANARRRRKRALATRVRPA---- 276
+ G T G+P P PP LP + + ++ + PA
Sbjct: 968 VVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRG 1027
Query: 277 -PQTSGRPGPLGGPAISVVLSPASQAPEKGWSQSRGGA-RLGPEGQEPGR 324
P G PG G P + P G RG A GP G PGR
Sbjct: 1028 FPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGL-PGR 1076
Score = 28.5 bits (62), Expect = 8.6
Identities = 34/120 (28%), Positives = 43/120 (35%), Gaps = 13/120 (10%)
Query: 211 PPGGPGDAGTPMPKAG--GLRKRPGITRTEGNPSPRPPRRLTLPEDHPRLANARRRRKRA 268
PPG PG+ G P AG G + PG G P R P A K
Sbjct: 989 PPGPPGEQGLP-GAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPG-AQGAPGLKGG 1046
Query: 269 LATRVRPAP-------QTSGRPGPLGGPAISVVLSPASQAPEKGWSQSRGGARLGPEGQE 321
+ P P ++G GP+G P P A EKG +G GP G++
Sbjct: 1047 EGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQ--GPAGRD 1104
>gi|113416879 PREDICTED: hypothetical protein [Homo sapiens]
Length = 175
Score = 45.4 bits (106), Expect = 7e-05
Identities = 47/144 (32%), Positives = 52/144 (36%), Gaps = 24/144 (16%)
Query: 152 EAPGHRHRPRTPWPPRAGS-AGSCETR---PNEAHLAPPRGRVAGLDHLPHQALKA-PQS 206
E PG+RH P PP A + GSC R P L P G A A P+
Sbjct: 50 EEPGNRHPP----PPAARTHPGSCRARCPSPAAGGLRGPWTAAPGRQRADEGAAAARPER 105
Query: 207 PRAFPPGGPGDAGTPMPKAGGLRKRPGITRTEGNPSPRPPRRLTLPEDHPRLANARRRRK 266
R + PG A P P LR P P P PP R PRL A
Sbjct: 106 QRVWARRLPGSAAAPAPGRDALRLPP--------PPPPPPER-------PRLPPAGLAGG 150
Query: 267 RALATRVRPAPQTSGRPGPLGGPA 290
A + PAP RP P G A
Sbjct: 151 PADSAPPSPAPAPRSRPAPRPGHA 174
Score = 33.5 bits (75), Expect = 0.27
Identities = 46/143 (32%), Positives = 52/143 (36%), Gaps = 37/143 (25%)
Query: 201 LKAPQSPRAFPPGGPGD--------------------AGTPMPKAGGLR----KRPGITR 236
L+ P PR PP PG+ A P P AGGLR PG R
Sbjct: 35 LRDPPPPRPAPP-RPGEEPGNRHPPPPAARTHPGSCRARCPSPAAGGLRGPWTAAPGRQR 93
Query: 237 T-EGNPSPRPPRRLTLPEDHPRLANARRRRKRALATRVRPAPQTSGRP-----GPLGGPA 290
EG + RP R+ P A A + AL P P RP G GGPA
Sbjct: 94 ADEGAAAARPERQRVWARRLPGSAAAPAPGRDALRLPPPPPPPPE-RPRLPPAGLAGGPA 152
Query: 291 ISVVLSPA-----SQAPEKGWSQ 308
S SPA AP G +Q
Sbjct: 153 DSAPPSPAPAPRSRPAPRPGHAQ 175
>gi|53692189 adipocyte enhancer binding protein 1 precursor [Homo
sapiens]
Length = 1158
Score = 45.1 bits (105), Expect = 9e-05
Identities = 46/172 (26%), Positives = 69/172 (40%), Gaps = 30/172 (17%)
Query: 162 TPWPPRAGSAGSCETRPNEAHLAPP-----RGRVAGLDHLPHQALKAPQSPRAFPPGGPG 216
TP +A + G RP A PP +G+ D K P+ P+
Sbjct: 63 TPRVRKAQAGGKPGKRPGTAAEVPPEKTKDKGKKGKKD-------KGPKVPKE------S 109
Query: 217 DAGTPMPKAGGLRKRPGITRTEGNPSPRPPRRLTLPEDHPRLANARRRRKRALATRVRPA 276
G+P P G K P T+ P +PP+ P++ P A + + K AT+ P
Sbjct: 110 LEGSPRPPKKGKEKPPKATK---KPKEKPPKATKKPKEKPPKATKKPKEKPPKATKKPP- 165
Query: 277 PQTSGRPGPLGGPAISV---VLSPASQAPEKGWSQSRGGARLGPEGQEPGRD 325
SG+ P+ P+ ++ + P S PE+ GGA L Q PG +
Sbjct: 166 ---SGKRPPILAPSETLEWPLPPPPSPGPEE--LPQEGGAPLSNNWQNPGEE 212
>gi|150170729 microtubule associated serine/threonine kinase 3 [Homo
sapiens]
Length = 1309
Score = 44.7 bits (104), Expect = 1e-04
Identities = 47/163 (28%), Positives = 61/163 (37%), Gaps = 27/163 (16%)
Query: 164 WPPRAGSAGSCETRPNEAHLAPPRGRVAGLDHLPHQALKAPQSPRAFPPGGPGDAGTPMP 223
W S S ++P E +P LD +P A + GPG AG
Sbjct: 755 WTSSGSSCQSSSSQP-ERGPSPSLLNTISLDTMPKFAFSSEDEGV-----GPGPAGP--- 805
Query: 224 KAGGLRKRPGITRTEGNPSPRP----PRRLTLPEDHPRLANARRRRKRALATRVRPAPQT 279
KRP E +P P P+ +L D L++AR R A P P
Sbjct: 806 ------KRPVFILGEPDPPPAATPVMPKPSSLSADTAALSHARLRSNSIGARHSTPRPLD 859
Query: 280 SGRPGPLGGPAISVVLSPASQAPEKGWSQSRGGARLGPEGQEP 322
+GR LGG P APEK + S GG+ G G+ P
Sbjct: 860 AGRGRRLGG--------PRDPAPEKSRASSSGGSGGGSGGRVP 894
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 44.3 bits (103), Expect = 2e-04
Identities = 42/132 (31%), Positives = 50/132 (37%), Gaps = 14/132 (10%)
Query: 208 RAFP-----PGGPGDAGTP-MPKAGGLRKRPGITRTEGNPSPRPPRRLTLPEDHPRLANA 261
R FP PG PG AG P P A GL+ PG+ G+P R PR P+ P
Sbjct: 1298 RGFPGADGRPGSPGRAGNPGTPGAPGLKGSPGLPGPRGDPGERGPRG---PKGEPGAPGQ 1354
Query: 262 RRRRKRALATRVRPAPQTSGRPGPLG-----GPAISVVLSPASQAPEKGWSQSRGGARLG 316
+ + P SG PGP G GP L + +KG RG G
Sbjct: 1355 VIGGEGPGLPGRKGDPGPSGPPGPRGPLGDPGPRGPPGLPGTAMKGDKGDRGERGPPGPG 1414
Query: 317 PEGQEPGRDQKP 328
G PG P
Sbjct: 1415 EGGIAPGEPGLP 1426
Score = 40.0 bits (92), Expect = 0.003
Identities = 50/181 (27%), Positives = 63/181 (34%), Gaps = 22/181 (12%)
Query: 154 PGHRHRPRTPWPPRAGSAGSCETR----PNEAHLAPPRGRVAGLDHLPHQALKAPQSPRA 209
PG R P P G G R P E +AP + GL P PQ P
Sbjct: 1385 PGPRGPPGLPGTAMKGDKGDRGERGPPGPGEGGIAPGEPGLPGLPGSP-----GPQGPVG 1439
Query: 210 FPPGGPGDAGTPMPKAGGLRKRPGITRTEGNPSPRPPRRLTLPEDHPRL------ANARR 263
PPG G+ G A GL +PG + G PR P P+ A +
Sbjct: 1440 -PPGKKGEKGDSEDGAPGLPGQPG---SPGEQGPRGPPGAIGPKGDRGFPGPLGEAGEKG 1495
Query: 264 RRKRALATRVRPAPQTSGRP---GPLGGPAISVVLSPASQAPEKGWSQSRGGARLGPEGQ 320
R R P +GRP GP G P + + G G A GP+G+
Sbjct: 1496 ERGPPGPAGSRGLPGVAGRPGAKGPEGPPGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGE 1555
Query: 321 E 321
+
Sbjct: 1556 K 1556
Score = 38.5 bits (88), Expect = 0.008
Identities = 35/115 (30%), Positives = 39/115 (33%), Gaps = 22/115 (19%)
Query: 211 PPGGPGDAGTPMPKAGGLRKRPGITRTEGNPSPRPPRRLTLPEDHPRLANARRRRKRALA 270
PPG GD G P GL PG+ G PR P LA
Sbjct: 2384 PPGVKGDLGLP-----GLPGAPGVVGFPGQTGPRGEMGQPGPSGERGLAGP--------- 2429
Query: 271 TRVRPAPQTSGRPGPLGGPAISVVLSPASQAPEKGWSQSRGGARLGPEGQ--EPG 323
P G PGPLG P + P + KG G GP G+ EPG
Sbjct: 2430 ------PGREGIPGPLGPPGPPGSVGPPGASGLKGDKGDPGVGLPGPRGERGEPG 2478
Score = 35.8 bits (81), Expect = 0.054
Identities = 36/117 (30%), Positives = 44/117 (37%), Gaps = 20/117 (17%)
Query: 213 GGPGDAGTPMPKAGGLRKRPGITRTEGNPSPRPPRRLTLPEDHPRLANARRRRKRALATR 272
G GD G +P G R PGI +G P PR LT P + R K +
Sbjct: 2458 GDKGDPGVGLPGPRGERGEPGIRGEDGRPGQEGPRGLTGPPG----SRGERGEKGDVG-- 2511
Query: 273 VRPAPQTSGRPGPLGGPAISVVLSPASQAPEKGWSQSRGGARL----GPEGQ--EPG 323
++G G G A V+L P KG RG L GP G +PG
Sbjct: 2512 ------SAGLKGDKGDSA--VILGPPGPRGAKGDMGERGPRGLDGDKGPRGDNGDPG 2560
Score = 35.0 bits (79), Expect = 0.092
Identities = 37/130 (28%), Positives = 44/130 (33%), Gaps = 21/130 (16%)
Query: 186 PRGRVAGLDHLPHQALKAPQSPRAFP-----PGGPGDAGTP----MPKAGGLRKRPGITR 236
P G +D P L Q P PG GD G +P G R PG
Sbjct: 2089 PPGPKVSVDE-PGPGLSGEQGPPGLKGAKGEPGSNGDQGPKGDRGVPGIKGDRGEPGPRG 2147
Query: 237 TEGNPSPRPPRRLTLPEDHPRLANARRRRKRALATRVRPAPQTS-GRPGPLGGPAISVVL 295
+GNP R + PE P L R P P G PGP G P ++
Sbjct: 2148 QDGNPGLPGERGMAGPEGKPGLQGPRG----------PPGPVGGHGDPGPPGAPGLAGPA 2197
Query: 296 SPASQAPEKG 305
P + KG
Sbjct: 2198 GPQGPSGLKG 2207
Score = 34.3 bits (77), Expect = 0.16
Identities = 55/209 (26%), Positives = 63/209 (30%), Gaps = 45/209 (21%)
Query: 129 PGGRNGKKSLRMAASGPESGLWVEAPGHRHRPRTPWPPRAGSAGSCETRPNEAHLAPPRG 188
PGG K S E GL PG R G G + PN L G
Sbjct: 1906 PGGTGPKGDRGETGSKGEQGL----PGER-----------GLRGEPGSVPNVDRLLETAG 1950
Query: 189 RVAGL--------DHLPHQALKAPQSPRAFPPGGPGDAGTPMPKAG-GLRKRPGITRTEG 239
A D L P+ R P G G+ G P + G G+ G
Sbjct: 1951 IKASALREIVETWDESSGSFLPVPERRRG-PKGDSGEQGPPGKEGPIGFPGERGLKGDRG 2009
Query: 240 NPSPRPPRRLTLPEDHPRLANARRRRKRALATRVRPAPQTSGRPGPLGGPAISVVLSPAS 299
+P P+ P L L E P P SG G G P I + A
Sbjct: 2010 DPGPQGPPGLALGERGP--------------------PGPSGLAGEPGKPGIPGLPGRAG 2049
Query: 300 QAPEKGWSQSRGGARLGPEGQEPGRDQKP 328
E G RG E E GRD P
Sbjct: 2050 GVGEAGRPGERGERGEKGERGEQGRDGPP 2078
Score = 34.3 bits (77), Expect = 0.16
Identities = 52/196 (26%), Positives = 61/196 (31%), Gaps = 31/196 (15%)
Query: 154 PGHRHRPRTPWPPRAGSAGSCETRPNEAHLAPPRGRVAGLDHLPHQALKAPQSPRAFPPG 213
PG R + P P E +P P G V G H P +P P
Sbjct: 2143 PGPRGQDGNPGLPGERGMAGPEGKPGLQGPRGPPGPVGG-----HGDPGPPGAPGLAGPA 2197
Query: 214 GP----GDAGTPMPKAGGLRKRPGITRTEGNPSPRPPRRLTLPEDHPRL----------- 258
GP G G P R G T G P P P L P+ P L
Sbjct: 2198 GPQGPSGLKGEPGETGPPGRGLTGPTGAVGLPGPPGPSGLVGPQGSPGLPGQVGETGKPG 2257
Query: 259 ANARRRRKRALATRVRPAPQTS----------GRPGPLGGPAISVVLSPASQAPEKGWSQ 308
A R R P S G PGP G P +VV P ++ EKG
Sbjct: 2258 APGRDGASGKDGDRGSPGVPGSPGLPGPVGPKGEPGPTGAPGQAVVGLPGAKG-EKGAPG 2316
Query: 309 SRGGARLGPEGQEPGR 324
G +G G + R
Sbjct: 2317 GLAGDLVGEPGAKGDR 2332
Score = 31.6 bits (70), Expect = 1.0
Identities = 37/132 (28%), Positives = 46/132 (34%), Gaps = 26/132 (19%)
Query: 212 PGGPGDAGTPMPKAGGLRKRPGITRTEGNPSPRPPR----RLTLPEDHPRLANARRRRKR 267
PG G+ G P AG L PG G P PR + R P D + ++
Sbjct: 2306 PGAKGEKGAPGGLAGDLVGEPGAKGDRGLPGPRGEKGEAGRAGEPGDPGE--DGQKGAPG 2363
Query: 268 ALATRVRPAPQTSGRPGPLGGPAI-------------SVVLSPASQAP-----EKGWSQS 309
+ P G PGP G P + VV P P + G S
Sbjct: 2364 PKGFKGDPGVGVPGSPGPPGPPGVKGDLGLPGLPGAPGVVGFPGQTGPRGEMGQPGPSGE 2423
Query: 310 RGGARLGPEGQE 321
RG A GP G+E
Sbjct: 2424 RGLA--GPPGRE 2433
Score = 31.2 bits (69), Expect = 1.3
Identities = 37/114 (32%), Positives = 42/114 (36%), Gaps = 18/114 (15%)
Query: 131 GRNGKKSLRMAASGPE--SGLWVEAPGHRHRPRTPW-PPRAGSAGSCETRPNEAHLAPPR 187
G G L + GP SGL E PG +P P P RAG G RP E R
Sbjct: 2012 GPQGPPGLALGERGPPGPSGLAGE-PG---KPGIPGLPGRAGGVGEAG-RPGE------R 2060
Query: 188 GRVAGLDHLPHQALKAPQSPRAFPPGGPGDAGTPMPKAGGLRKRPGITRTEGNP 241
G Q P PG PG G P PK PG++ +G P
Sbjct: 2061 GERGEKGERGEQGRDGPPGL----PGTPGPPGPPGPKVSVDEPGPGLSGEQGPP 2110
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 44.3 bits (103), Expect = 2e-04
Identities = 45/171 (26%), Positives = 56/171 (32%), Gaps = 15/171 (8%)
Query: 128 PPGGRNGKKSLRMAASGPESGLWVEAPGHRHRPRTPWP----PRAGSAGSCETRPNEAHL 183
PP ++ K + GP G+ P P P P G T P
Sbjct: 100 PPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTS 159
Query: 184 APPRGRV-----AGLDHLPHQALKAPQSPRAFPPGGPGDAGTPMPKAGGLRKRPGITRTE 238
APP +G+ P QA P P A P GPG P P K PG +
Sbjct: 160 APPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPG 219
Query: 239 GNPSPRPPRRLTLPEDHPRLANARRRRKRALATRVRPAPQTSGRPGPLGGP 289
G P L+ P HP+ + R P Q + P GGP
Sbjct: 220 GGPG------LSTPGGHPKPPHRGGGEPRGGRQHHPPYHQQHHQGPPPGGP 264
Score = 31.6 bits (70), Expect = 1.0
Identities = 52/212 (24%), Positives = 66/212 (31%), Gaps = 29/212 (13%)
Query: 130 GGRNGKKSLRMAASG----PESGLWVEAPGHRHRPRTPWPPRAGSAGSCETRPNEAHLAP 185
GGR G R G G PG + P+ P PP P++ P
Sbjct: 23 GGRGGLHDFRSPPPGMGLNQNRGPMGPGPG-QSGPKPPIPPPP---------PHQQQQQP 72
Query: 186 PRGRVAGLDHLPHQALKAPQ-SPRAFPPGGPGDAGTPMPKAGGLRKRPGITRTEGNPSPR 244
P + PHQ PQ + PP P D+ P+ A G PG+ S
Sbjct: 73 PPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPV-VAQGPGPAPGVGSAPPASSSA 131
Query: 245 PPRRLTLPEDHPRLANARRRRKRALATRV-----RPAPQTSG---RPGPLGGPAISVVLS 296
PP P T P P +SG P GGP
Sbjct: 132 PPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPP-----P 186
Query: 297 PASQAPEKGWSQSRGGARLGPEGQEPGRDQKP 328
P + P G +G GP+G + KP
Sbjct: 187 PPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKP 218
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 43.9 bits (102), Expect = 2e-04
Identities = 41/160 (25%), Positives = 64/160 (40%), Gaps = 18/160 (11%)
Query: 131 GRNGKKSLRMAASGPESGLWVEAPGHRHRPRTPWPPRAGSAGSCETRPNEAHLAPPRGRV 190
G + + ++ +AS E +P + + RTP R+ S S E +++ L+P R R
Sbjct: 1540 GSSQELDVKPSASPQERSESDSSPDSKAKTRTPLRQRSRSGSSPEV-DSKSRLSPRRSRS 1598
Query: 191 AGLDHLPHQALKAPQSPRAFPPGGPGDAGTPMPKAGGLRKRPGITRTEGN-----PSPRP 245
+ + PRA P G +P PKA R P +R+ + PSP
Sbjct: 1599 GS-------SPEVKDKPRAAPRAQSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGPSPEG 1651
Query: 246 PRRLTLPEDHPRLANARRRRKRALATRVRPAPQTSGRPGP 285
+HP + RR +R P P+T R P
Sbjct: 1652 SSSTESSPEHPPKSRTARR-----GSRSSPEPKTKSRTPP 1686
Score = 32.3 bits (72), Expect = 0.60
Identities = 34/138 (24%), Positives = 52/138 (37%), Gaps = 12/138 (8%)
Query: 197 PHQALKAPQSPRAFPPGGPGDAGTPMPKAGGLRKRPGITRTEGNPSPRPPRRLTLPEDHP 256
P + P+SP P ++ P P +P + SP P+ P H
Sbjct: 399 PTRDRSPPKSPEKLPQSSSSESSPPSP-------QPTKVSRHASSSPESPKPAPAPGSHR 451
Query: 257 RLANA--RRRRKRALATRVRPAPQT-SGRPGPLGGPAISVVLSPASQAPEK-GWSQSRGG 312
++++ + R A R + T S R G PA + S+ P K G S+SR
Sbjct: 452 EISSSPTSKNRSHGRAKRDKSHSHTPSRRMGRSRSPATAKRGRSRSRTPTKRGHSRSRSP 511
Query: 313 A-RLGPEGQEPGRDQKPR 329
R Q GR + P+
Sbjct: 512 QWRRSRSAQRWGRSRSPQ 529
Score = 28.9 bits (63), Expect = 6.6
Identities = 28/127 (22%), Positives = 46/127 (36%), Gaps = 6/127 (4%)
Query: 157 RHRPRTPWPPRAGSAGSCETRPNEAHLAPPRGRVAGLDHLPHQALKAPQSPRAFPPGGPG 216
R R + P R G +GS R N++ + R R + + + +S P
Sbjct: 710 RGRSHSRTPQRRGRSGSSSERKNKSRTSQRRSRSNSSPEMKKSRISSRRSRSLSSPRSKA 769
Query: 217 DAGTPMPKAGGLRKRPGITRTEGNPSPRPPRRLTLPEDHPRLANARRRRKRALATRVRPA 276
+ + R G + S PPRR P+ A +R +R+ ++ P
Sbjct: 770 KSRLSL-----RRSLSGSSPCPKQKSQTPPRRSRSGSSQPK-AKSRTPPRRSRSSSSPPP 823
Query: 277 PQTSGRP 283
Q S P
Sbjct: 824 KQKSKTP 830
>gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens]
Length = 1142
Score = 43.5 bits (101), Expect = 3e-04
Identities = 61/228 (26%), Positives = 80/228 (35%), Gaps = 52/228 (22%)
Query: 125 GSIPPGGRNGK--KSLRMAASGP--ESGLWVEAPGHRHRPRTPWPP----------RAGS 170
GS+ P G+ G+ + G E G+ + + G + P P PP + GS
Sbjct: 471 GSVGPKGQKGEPGEPFTKGEKGDRGEPGV-IGSQGVKGEPGDPGPPGLIGSPGLKGQQGS 529
Query: 171 AGSCETR--PNEAHLAPPRGRVAGLDHLPHQALKAPQSPRAFPPGGPGDAGTPMPKAGGL 228
AGS R P + L G + G + + K PPG PG G P L
Sbjct: 530 AGSMGPRGPPGDVGLPGEHG-IPGKQGIKGE--KGDPGGIIGPPGLPGPKGEAGPPGKSL 586
Query: 229 RKRPGITRTEGNPSPRPPRRLTLPEDHPRLANARRRRKRALATRVRPAPQTSGRPGPLGG 288
PG+ G P PR P+ R P G PG +G
Sbjct: 587 PGEPGLDGNPGAPGPRGPK------------------------GERGLPGVHGSPGDIGP 622
Query: 289 PAISVVLSPASQAP--EKGWSQSRGGARL----GPEGQE--PGRDQKP 328
I + +Q P E G RG L G G + PGRD KP
Sbjct: 623 QGIGIPGRTGAQGPAGEPGIQGPRGLPGLPGTPGTPGNDGVPGRDGKP 670
Score = 28.9 bits (63), Expect = 6.6
Identities = 40/154 (25%), Positives = 50/154 (32%), Gaps = 26/154 (16%)
Query: 169 GSAGSCETRPNEAHLAPPRGRVAGLDHLPHQALKAPQSPRA--FPPGGPGDAGTPMPKAG 226
GS G + + P +AGL+ LK P P G GD G P P A
Sbjct: 334 GSKGETGEKGEQGEKGDPA--LAGLNG--ENGLKGDLGPHGPPGPKGEKGDTGPPGPPA- 388
Query: 227 GLRKRPGITRTEGNPSPRPPRRLTLPEDHPRLANARRRRKRALATRVRPAPQTSGRPGPL 286
PG +G P+ P R RR + T P G PGP
Sbjct: 389 ----LPGSLGIQG------------PQGPPGKEGQRGRRGK---TGPPGKPGPPGPPGPP 429
Query: 287 GGPAISVVLSPASQAPEKGWSQSRGGARLGPEGQ 320
G I L KG + G G +G+
Sbjct: 430 GIQGIHQTLGGYYNKDNKGNDEHEAGGLKGDKGE 463
>gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo
sapiens]
Length = 870
Score = 43.5 bits (101), Expect = 3e-04
Identities = 62/213 (29%), Positives = 85/213 (39%), Gaps = 32/213 (15%)
Query: 138 LRMAASGPESGLWVEAPGH----RHRPRTPWPPRA-GSAGSCETRPNEAHLAPP------ 186
L ++ S VE PG R R P RA G G P+ PP
Sbjct: 607 LPASSDSERSASSVEGPGGALYARVARREARPARARGEIGGLSLSPSPERRKPPPPDPAT 666
Query: 187 RGRVAGLDHLPHQALKAPQSPRAFPPGGPGDAG------TPMPKAGGLRKRPGITRTEGN 240
+ +V+ + H H A A ++P PPG TP K+ + G RT +
Sbjct: 667 KPKVSWI-HGKHSAAAAGRAPSPPPPGSEAAPSPSKRKRTPSDKSAHTVEH-GSPRTR-D 723
Query: 241 PSPRPPRRLTLPEDHPRLANARRRRKRALATRVRPAPQTSGRPGPLGGPAISVVLSPASQ 300
P+PRPP LPE+ LA R RA R AP+ G G PA +
Sbjct: 724 PTPRPPG---LPEEATALAAPSPPRARA-----RAAPRPLGAHGRRRSPAKRAEAASMLA 775
Query: 301 APEKGWSQSRGGAR--LGPEG--QEPGRDQKPR 329
A +G ++S G A LG +G ++P QK +
Sbjct: 776 ADVRGKTRSLGRAEVALGAQGPREKPAPPQKAK 808
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.135 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,439,906
Number of Sequences: 37866
Number of extensions: 1354330
Number of successful extensions: 7406
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 734
Number of HSP's that attempted gapping in prelim test: 5296
Number of HSP's gapped (non-prelim): 2196
length of query: 329
length of database: 18,247,518
effective HSP length: 103
effective length of query: 226
effective length of database: 14,347,320
effective search space: 3242494320
effective search space used: 3242494320
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.