Guide to the Human Genome
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Name: DGCR14 Sequence: fasta or formatted (476aa) NCBI GI: 13027630
Description:

DiGeorge syndrome critical region protein 14

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.7         51           3
 C cysteine            0.2          1           1
 D aspartate           3.4         16           1
 E glutamate          10.5         50           4
 F phenylalanine       3.2         15           2
 G glycine             6.3         30           2
 H histidine           1.3          6           1
 I isoleucine          1.9          9           1
 K lysine              6.1         29           2
 L leucine             8.4         40           3
 M methionine          1.9          9           2
 N asparagine          2.7         13           1
 P proline             9.2         44           4
 Q glutamine           5.3         25           2
 R arginine            7.8         37           2
 S serine              7.6         36           2
 T threonine           6.1         29           1
 V valine              4.6         22           2
 W tryptophan          0.6          3           1
 Y tyrosine            2.3         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   DiGeorge syndrome critical region protein 14 
PELP1                 0.024   proline, glutamic acid and leucine rich protein 1 [...
RCSD1                 0.015   RCSD domain containing 1 
FLJ22184              0.015   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.015   PREDICTED: hypothetical protein FLJ22184 
MUC17                 0.014   mucin 17 
LOC100133756          0.013   PREDICTED: hypothetical protein, partial 
NES                   0.013   nestin 
WAC                   0.013   WW domain-containing adapter with a coiled-coil regi...
BAT2D1                0.013   HBxAg transactivated protein 2 
C11orf30              0.013   EMSY protein 
ABLIM1                0.013   actin-binding LIM protein 1 isoform s 
ABLIM1                0.013   actin-binding LIM protein 1 isoform c 
ABLIM1                0.013   actin-binding LIM protein 1 isoform b 
ABLIM1                0.013   actin-binding LIM protein 1 isoform a 
NEFH                  0.012   neurofilament, heavy polypeptide 200kDa 
APC2                  0.012   adenomatosis polyposis coli 2 
PRG4                  0.012   proteoglycan 4 isoform D 
PRG4                  0.012   proteoglycan 4 isoform C 
PRG4                  0.012   proteoglycan 4 isoform B 
PRG4                  0.012   proteoglycan 4 isoform A 
FLJ22184              0.012   PREDICTED: hypothetical protein LOC80164 
CCNB3                 0.011   cyclin B3 isoform 3 
KIF15                 0.011   kinesin family member 15 
NAV1                  0.011   neuron navigator 1 
COL27A1               0.011   collagen, type XXVII, alpha 1 
WNK4                  0.010   WNK lysine deficient protein kinase 4 
LOC100294448          0.010   PREDICTED: hypothetical protein 
KDM1                  0.010   amine oxidase (flavin containing) domain 2 isoform a...
SLC38A10              0.010   solute carrier family 38, member 10 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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