Guide to the Human Genome
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Name: LOC100292196 Sequence: fasta or formatted (182aa) NCBI GI: 239756199
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.3         17           2
 C cysteine            4.4          8           1
 D aspartate           2.2          4           1
 E glutamate           4.4          8           2
 F phenylalanine       1.1          2           1
 G glycine            16.5         30           2
 H histidine           4.4          8           1
 I isoleucine          1.6          3           1
 K lysine              1.6          3           1
 L leucine             8.8         16           2
 M methionine          1.6          3           1
 N asparagine          0.0          0           0
 P proline             7.7         14           1
 Q glutamine           7.1         13           2
 R arginine            7.7         14           2
 S serine              9.9         18           2
 T threonine           3.8          7           2
 V valine              4.4          8           1
 W tryptophan          3.3          6           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
WEE1                  0.038   WEE1 tyrosine kinase isoform 1 
FLJ31945              0.036   PREDICTED: hypothetical protein 
FLJ31945              0.036   PREDICTED: hypothetical protein 
KLF4                  0.033   Kruppel-like factor 4 (gut) 
LOC100291550          0.033   PREDICTED: hypothetical protein XP_002346431 
FLJ31945              0.027   PREDICTED: hypothetical protein 
DMWD                  0.022   dystrophia myotonica-containing WD repeat motif prot...
FLJ46906              0.019   PREDICTED: hypothetical protein 
FLJ46906              0.019   PREDICTED: hypothetical protein LOC441172 
FLJ46906              0.019   PREDICTED: hypothetical protein LOC441172 
FOXF2                 0.019   forkhead box F2 
VWA5B2                0.019   von Willebrand factor A domain containing 5B2 [Homo...
LOC100293933          0.019   PREDICTED: hypothetical protein 
LOC100290206          0.019   PREDICTED: hypothetical protein XP_002347062 
LOC100287139          0.019   PREDICTED: hypothetical protein XP_002342915 
LOC100134240          0.019   PREDICTED: hypothetical protein 
LOC100133638          0.019   PREDICTED: hypothetical protein 
LOC339742             0.019   PREDICTED: hypothetical protein 
APC2                  0.019   adenomatosis polyposis coli 2 
STRN4                 0.016   zinedin isoform 2 
STRN4                 0.016   zinedin isoform 1 
OTUD5                 0.016   OTU domain containing 5 isoform a 
OTUD5                 0.016   OTU domain containing 5 isoform b 
OTUD5                 0.016   OTU domain containing 5 isoform b 
LOC100292073          0.016   PREDICTED: hypothetical protein XP_002344738 
FIZ1                  0.016   FLT3-interacting zinc finger 1 
KLF13                 0.016   Kruppel-like factor 13 
KRT6C                 0.014   keratin 6C 
C6orf174              0.014   hypothetical protein LOC387104 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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