Guide to the Human Genome
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Name: LOC100128949 Sequence: fasta or formatted (127aa) NCBI GI: 239746936
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {127aa} PREDICTED: hypothetical protein
alt prot {127aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.0         14           2
 C cysteine            3.9          5           1
 D aspartate           2.4          3           1
 E glutamate           8.7         11           3
 F phenylalanine       0.8          1           1
 G glycine            19.7         25           3
 H histidine           1.6          2           1
 I isoleucine          0.0          0           0
 K lysine              0.8          1           1
 L leucine             5.5          7           1
 M methionine          3.9          5           1
 N asparagine          0.0          0           0
 P proline             2.4          3           1
 Q glutamine          11.8         15           2
 R arginine           11.8         15           2
 S serine              4.7          6           1
 T threonine           1.6          2           1
 V valine              7.1          9           3
 W tryptophan          2.4          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128949          1.000   PREDICTED: hypothetical protein 
LOC100128949          0.992   PREDICTED: hypothetical protein 
SNRNP70               0.042   U1 small nuclear ribonucleoprotein 70 kDa 
UBAP2                 0.037   ubiquitin associated protein 2 
LOC100292370          0.033   PREDICTED: hypothetical protein 
LOC644280             0.033   PREDICTED: similar to hCG2041260 
LOC100292409          0.033   PREDICTED: hypothetical protein 
ADRA2C                0.033   alpha-2C-adrenergic receptor 
LOC100290946          0.029   PREDICTED: hypothetical protein XP_002347121 
LOC100288840          0.029   PREDICTED: hypothetical protein XP_002344246 
SNX26                 0.029   sorting nexin 26 
ZC3H4                 0.029   zinc finger CCCH-type containing 4 
C20orf160             0.029   hypothetical protein LOC140706 
SORCS3                0.029   VPS10 domain receptor protein SORCS 3 
LOC728767             0.025   PREDICTED: hypothetical protein 
LOC728767             0.025   PREDICTED: hypothetical protein 
LOC730351             0.021   PREDICTED: hypothetical protein 
LOC100291249          0.021   PREDICTED: hypothetical protein XP_002347295 
LOC730351             0.021   PREDICTED: hypothetical protein 
LOC730351             0.021   PREDICTED: hypothetical protein 
HNRNPR                0.021   heterogeneous nuclear ribonucleoprotein R isoform 3...
HNRNPR                0.021   heterogeneous nuclear ribonucleoprotein R isoform 1...
HNRNPR                0.021   heterogeneous nuclear ribonucleoprotein R isoform 4...
HNRNPR                0.021   heterogeneous nuclear ribonucleoprotein R isoform 2 [...
DDX21                 0.021   DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 
SPAG1                 0.021   sperm associated antigen 1 
SPAG1                 0.021   sperm associated antigen 1 
ESYT2                 0.021   family with sequence similarity 62 (C2 domain contai...
LOC100290372          0.021   PREDICTED: hypothetical protein XP_002346788 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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