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Search of human proteins with 239742880
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239742880 PREDICTED: hypothetical protein XP_002342669 [Homo
sapiens]
(205 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239742880 PREDICTED: hypothetical protein XP_002342669 [Homo ... 428 e-120
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 38 0.005
gi|110832843 TBP-associated factor 4 [Homo sapiens] 38 0.007
gi|19924099 synapsin I isoform Ia [Homo sapiens] 38 0.007
gi|19924097 synapsin I isoform Ib [Homo sapiens] 38 0.007
gi|239747656 PREDICTED: similar to mCG116201 [Homo sapiens] 37 0.009
gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens] 37 0.012
gi|239752133 PREDICTED: hypothetical protein [Homo sapiens] 37 0.012
gi|239746658 PREDICTED: hypothetical protein [Homo sapiens] 37 0.012
gi|117938310 sine oculis binding protein homolog [Homo sapiens] 37 0.012
gi|55742678 glucocorticoid induced transcript 1 [Homo sapiens] 37 0.015
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 37 0.015
gi|55750053 atrophin-1 [Homo sapiens] 36 0.020
gi|55750041 atrophin-1 [Homo sapiens] 36 0.020
gi|239756047 PREDICTED: heparan sulfate 6-O-sulfotransferase 3 [... 35 0.034
gi|45580707 heparan sulfate 6-O-sulfotransferase 3 [Homo sapiens] 35 0.034
gi|116268127 kinase non-catalytic C-lobe domain (KIND) containin... 35 0.034
gi|239757729 PREDICTED: hypothetical protein [Homo sapiens] 35 0.045
gi|239752222 PREDICTED: hypothetical protein [Homo sapiens] 35 0.045
gi|239746743 PREDICTED: hypothetical protein [Homo sapiens] 35 0.045
gi|238908524 hypothetical protein LOC389333 [Homo sapiens] 35 0.058
gi|58218966 hypothetical protein LOC339201 [Homo sapiens] 35 0.058
gi|239754611 PREDICTED: hypothetical protein [Homo sapiens] 34 0.076
gi|239749157 PREDICTED: hypothetical protein XP_002346930 [Homo ... 34 0.076
gi|239743220 PREDICTED: hypothetical protein XP_002342806 [Homo ... 34 0.076
gi|239508892 PREDICTED: hypothetical protein [Homo sapiens] 34 0.076
gi|21536357 TBP-associated factor 6 isoform delta [Homo sapiens] 34 0.076
gi|21536355 TBP-associated factor 6 isoform gamma [Homo sapiens] 34 0.076
gi|5032147 TBP-associated factor 6 isoform alpha [Homo sapiens] 34 0.076
gi|21536359 TBP-associated factor 6 isoform alpha [Homo sapiens] 34 0.076
>gi|239742880 PREDICTED: hypothetical protein XP_002342669 [Homo
sapiens]
Length = 205
Score = 428 bits (1100), Expect = e-120
Identities = 205/205 (100%), Positives = 205/205 (100%)
Query: 1 MAAPSGPAGSLGTTPFILQKHSYGWTQGHSVLAITTTSPSSFSSSSQNYLPPDQVPHSPV 60
MAAPSGPAGSLGTTPFILQKHSYGWTQGHSVLAITTTSPSSFSSSSQNYLPPDQVPHSPV
Sbjct: 1 MAAPSGPAGSLGTTPFILQKHSYGWTQGHSVLAITTTSPSSFSSSSQNYLPPDQVPHSPV 60
Query: 61 KSESRRLGPTATENKNLTAALPTGQRPGLQALGAHSGVGGSCKHFGETKPPACGAAASPS 120
KSESRRLGPTATENKNLTAALPTGQRPGLQALGAHSGVGGSCKHFGETKPPACGAAASPS
Sbjct: 61 KSESRRLGPTATENKNLTAALPTGQRPGLQALGAHSGVGGSCKHFGETKPPACGAAASPS 120
Query: 121 PAGHAKESRGREVWEPSGEGSPRPGPQDGERQGRPHLLRGPQGARAPAARDNKNADITGF 180
PAGHAKESRGREVWEPSGEGSPRPGPQDGERQGRPHLLRGPQGARAPAARDNKNADITGF
Sbjct: 121 PAGHAKESRGREVWEPSGEGSPRPGPQDGERQGRPHLLRGPQGARAPAARDNKNADITGF 180
Query: 181 GQEEIVHEAHERTVDSIWKLDSICL 205
GQEEIVHEAHERTVDSIWKLDSICL
Sbjct: 181 GQEEIVHEAHERTVDSIWKLDSICL 205
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 38.1 bits (87), Expect = 0.005
Identities = 39/132 (29%), Positives = 48/132 (36%), Gaps = 13/132 (9%)
Query: 54 QVPHSPVKSESRRLGPTATENKNLTAAL-PTGQR--PGLQALGAHSGVGGSCKHFGETKP 110
Q PH P + P A + L P G R GL L G G H G+ P
Sbjct: 517 QGPHGPPGRVGKMGRPGADGARGLPGDTGPKGDRGFDGLPGLPGEKGQRGDFGHVGQPGP 576
Query: 111 PA----CGAAASPSPAGHAKESRGREVWEPSGEGSP--RPGPQ--DGERQGRPHLLRGPQ 162
P GA P P G A E R + P G P RPG DG + ++ GP
Sbjct: 577 PGEDGERGAEGPPGPTGQAGEPGPRGLLGPRGSPGPTGRPGVTGIDGAPGAKGNV--GPP 634
Query: 163 GARAPAARDNKN 174
G P + +
Sbjct: 635 GEPGPPGQQGNH 646
Score = 33.1 bits (74), Expect = 0.17
Identities = 55/217 (25%), Positives = 70/217 (32%), Gaps = 51/217 (23%)
Query: 4 PSGPAGSLGTTPFILQKHSYGWTQGHSVLAITTTSPSSFSSSSQNYLPPDQVPHSPVKSE 63
P GPAG +G Q S G P+ S PP +
Sbjct: 1014 PLGPAGGIGLPG---QSGSEG-----------PVGPAGKKGSRGERGPPGPTGKDGIPGP 1059
Query: 64 SRRLGPTATENKNLTAALPTGQRPGLQALGAHSGVGGSCKHFGETKPPAC----GAAASP 119
LGP AA P+G+ +GA G GS G+ PP G A P
Sbjct: 1060 LGPLGPPG-------AAGPSGEEGDKGDVGA-PGHKGSKGDKGDAGPPGQPGIRGPAGHP 1111
Query: 120 SPAGHAKESRGRE--------------------VWEPSGEGSPRPGPQDGE----RQGRP 155
P G A ++GR + P +G P P + GE P
Sbjct: 1112 GPPG-ADGAQGRRGPPGLFGQKGDDGVRGFVGVIGPPGLQGLPGPPGEKGEVGDVGSMGP 1170
Query: 156 HLLRGPQGARAPAARDNKNADITGFGQEEIVHEAHER 192
H GP+G + P + G GQ V E ER
Sbjct: 1171 HGAPGPRGPQGPTGSEGTPGLPGGVGQPGAVGEKGER 1207
Score = 32.7 bits (73), Expect = 0.22
Identities = 26/84 (30%), Positives = 30/84 (35%), Gaps = 3/84 (3%)
Query: 87 PGLQALGAHSGVGGSCKHFGETKPP-ACGAAASPSPAGHAKES--RGREVWEPSGEGSPR 143
PG+ + G G G PP A G +P P G S GRE E
Sbjct: 1273 PGVSGIDGSPGEKGDPGDVGGPGPPGASGEPGAPGPPGKRGPSGHMGREGREGEKGAKGE 1332
Query: 144 PGPQDGERQGRPHLLRGPQGARAP 167
PGP + P RGP G P
Sbjct: 1333 PGPDGPPGRTGPMGARGPPGRVGP 1356
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 37.7 bits (86), Expect = 0.007
Identities = 37/122 (30%), Positives = 46/122 (37%), Gaps = 19/122 (15%)
Query: 53 DQVPHSPVKSESRRLGPTATENKNLTAALPTGQRPGLQALGAH--SGVGGSCKHFGETKP 110
++V V S +L +A + +L P + ALG H SG G P
Sbjct: 19 EKVVSDLVGSLESQLAASAAHHHHLAPRTPEVRAAAAGALGNHVVSGSPAGAAGAGPAAP 78
Query: 111 P--ACGAAASPSPAGHAKESRGREVWEPSGEGSPRPGPQDGERQGRPHLLRGPQGARAPA 168
A GAA P PAG A+ P G G RPGP P P G PA
Sbjct: 79 AEGAPGAAPEPPPAGRAR---------PGGGGPQRPGPPS------PRRPLVPAGPAPPA 123
Query: 169 AR 170
A+
Sbjct: 124 AK 125
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 37.7 bits (86), Expect = 0.007
Identities = 38/127 (29%), Positives = 48/127 (37%), Gaps = 7/127 (5%)
Query: 51 PPDQVPHSPVKSESRRLGPTATENKNLTAALPTG--QRPGLQALGAHSGVGGSCKHF--G 106
P Q P + LGP A PT Q+P QA G G + G
Sbjct: 480 PLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGG 539
Query: 107 ETKPPACGAAASPSP---AGHAKESRGREVWEPSGEGSPRPGPQDGERQGRPHLLRGPQG 163
PPA ASPSP AG + +R V P+ + P +RQG P GP G
Sbjct: 540 PGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPGPAG 599
Query: 164 ARAPAAR 170
A++
Sbjct: 600 PTRQASQ 606
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 37.7 bits (86), Expect = 0.007
Identities = 38/127 (29%), Positives = 48/127 (37%), Gaps = 7/127 (5%)
Query: 51 PPDQVPHSPVKSESRRLGPTATENKNLTAALPTG--QRPGLQALGAHSGVGGSCKHF--G 106
P Q P + LGP A PT Q+P QA G G + G
Sbjct: 480 PLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGG 539
Query: 107 ETKPPACGAAASPSP---AGHAKESRGREVWEPSGEGSPRPGPQDGERQGRPHLLRGPQG 163
PPA ASPSP AG + +R V P+ + P +RQG P GP G
Sbjct: 540 PGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPGPAG 599
Query: 164 ARAPAAR 170
A++
Sbjct: 600 PTRQASQ 606
>gi|239747656 PREDICTED: similar to mCG116201 [Homo sapiens]
Length = 591
Score = 37.4 bits (85), Expect = 0.009
Identities = 26/61 (42%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 108 TKPPACGAAASPSPAGHAKESRGREVWEPSG-EGSPRPGPQDGERQGRPHLLRGPQGARA 166
T P GA PSPA H ++ R V G EGS P+DG R+G H P+G RA
Sbjct: 479 TAPRTAGAPGFPSPAVHPQDGREGSVHPQDGREGSEH--PKDG-RKGSVHPPGPPRGLRA 535
Query: 167 P 167
P
Sbjct: 536 P 536
>gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens]
Length = 4391
Score = 37.0 bits (84), Expect = 0.012
Identities = 39/149 (26%), Positives = 56/149 (37%), Gaps = 36/149 (24%)
Query: 11 LGTTPFILQKHSYGWTQGHSVLAITTTSPS---SFSSSSQNYLPPDQVPHSPVKSESRRL 67
+ +TP L++ +YG H+VL I++ PS ++ +QN L
Sbjct: 3149 ISSTPAKLEQRTYGLMDSHAVLQISSAKPSDAGTYVCLAQNAL----------------- 3191
Query: 68 GPTATENKNLTAALPTGQ----RPGLQALGAHSGVGGSCKHFGETKPPACGAAASPSPAG 123
T K + + TG P +QA A V G T C A SP+P
Sbjct: 3192 ---GTAQKQVEVIVDTGAMAPGAPQVQAEEAELTV-----EAGHTATLRCSATGSPAPTI 3243
Query: 124 HAKESRGREVWEPSGEGS----PRPGPQD 148
H + R W+ EG PR QD
Sbjct: 3244 HWSKLRSPLPWQHRLEGDTLIIPRVAQQD 3272
>gi|239752133 PREDICTED: hypothetical protein [Homo sapiens]
Length = 224
Score = 37.0 bits (84), Expect = 0.012
Identities = 27/62 (43%), Positives = 31/62 (50%), Gaps = 16/62 (25%)
Query: 110 PPAC-GAAASPSPAGHAKESRGREVWEPSGEGSPRPGPQDGERQGRPHLLRGPQGARAPA 168
PPAC GAA P G+A++SRG G G P P Q RP RG + AR P
Sbjct: 148 PPACSGAATRREPPGNARQSRG------VGAGKPEP-------QRRPP--RGSRAARRPR 192
Query: 169 AR 170
AR
Sbjct: 193 AR 194
>gi|239746658 PREDICTED: hypothetical protein [Homo sapiens]
Length = 411
Score = 37.0 bits (84), Expect = 0.012
Identities = 27/62 (43%), Positives = 31/62 (50%), Gaps = 16/62 (25%)
Query: 110 PPAC-GAAASPSPAGHAKESRGREVWEPSGEGSPRPGPQDGERQGRPHLLRGPQGARAPA 168
PPAC GAA P G+A++SRG G G P P Q RP RG + AR P
Sbjct: 335 PPACSGAATRREPPGNARQSRG------VGAGKPEP-------QRRPP--RGSRAARRPR 379
Query: 169 AR 170
AR
Sbjct: 380 AR 381
>gi|117938310 sine oculis binding protein homolog [Homo sapiens]
Length = 873
Score = 37.0 bits (84), Expect = 0.012
Identities = 35/127 (27%), Positives = 50/127 (39%), Gaps = 31/127 (24%)
Query: 39 PSSFSSSSQNYLPPDQVPHSPVKSESRRLGPTATENKNLTAALPTGQRPGLQALGAHSGV 98
P+ FSS+ +N+ +P++P S + G +P +L
Sbjct: 552 PNGFSSNGENF-----IPNAPGDSAA------------------AGGKPSGHSLSPRDSK 588
Query: 99 GGSCKHFGETKPPACGAAA---SPSPAGHAKESRGREVWEPSGEGSPRPGPQDGERQGRP 155
GS K PP C A +P+PA H R V GSP P G + G P
Sbjct: 589 QGSSK--SADSPPGCSGQALSLAPTPAEHG---RSEVVDLTRRAGSPPGPPGAGGQLGFP 643
Query: 156 HLLRGPQ 162
+L+GPQ
Sbjct: 644 GVLQGPQ 650
>gi|55742678 glucocorticoid induced transcript 1 [Homo sapiens]
Length = 547
Score = 36.6 bits (83), Expect = 0.015
Identities = 41/149 (27%), Positives = 59/149 (39%), Gaps = 12/149 (8%)
Query: 34 ITTTSPSSFSSSSQNYLPPDQ-----VPHSPVKSESRRLGPTATENKNLTAALPTGQRPG 88
++T S SS SSSSQ PP Q SP + G A + A G
Sbjct: 1 MSTASSSSSSSSSQTPHPPSQRMRRSAAGSPPAVAAAGSGNGAGGGGGVGCAPAAGAGRL 60
Query: 89 LQALGA---HSGVGGSCKHFGETKPPACGAAASPSPAGHAKESRGREVWEPSGEGSPRPG 145
LQ + A + + GS T+PP AAAS +RG P+ + P
Sbjct: 61 LQPIRATVPYQLLRGS--QHSPTRPPVAAAAASLGSLPGPGAARGPSPSSPTPPAAAAPA 118
Query: 146 PQDGERQGRPHLLRGPQGARAPAARDNKN 174
Q +GRP R P+ R ++ + ++
Sbjct: 119 EQAPRAKGRPR--RSPESHRRSSSPERRS 145
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo
sapiens]
Length = 2161
Score = 36.6 bits (83), Expect = 0.015
Identities = 42/149 (28%), Positives = 56/149 (37%), Gaps = 31/149 (20%)
Query: 47 QNYLPPDQVP--HSPVKSESRRLGPTAT----------ENKNLTAALPTGQ---RPGLQA 91
+N+ D VP SP K +RR GP T N + + ALP PG +
Sbjct: 400 RNHREQDVVPFQESP-KYAARRRGPPGTGLTVPPALLRANSDTSMALPDWMVFSAPGAAS 458
Query: 92 LGAHSGVGGSCKHFGETKP--------------PACGAAASPSPAGHAKESRGREVWEPS 137
GA GS + P P A SPS H ++++ + PS
Sbjct: 459 SGAPGPTSGSQGQSQPSAPTTKLSSGTLRSASSPRGARARSPSRGRHPEDAKRQPRGRPS 518
Query: 138 GEGSPRPGPQDGE-RQGRPHLLRGPQGAR 165
G+PR GP G G P G +G R
Sbjct: 519 SSGTPREGPAGGTGGSGGPGGSLGSRGRR 547
Score = 27.7 bits (60), Expect = 7.1
Identities = 27/98 (27%), Positives = 37/98 (37%), Gaps = 3/98 (3%)
Query: 78 TAALPTGQRPGLQALGAHSGVGGSCKHFGETKPPACGAAASPSPAGHAKESRGREVWEPS 137
T P+ G G S G + ++F PP +AA PA + +G V +
Sbjct: 1058 TPGAPSPSHHGSAGGGGGSSQGPALRYF--QLPPRAASAAMYVPARSGRGRKGPLVKQTK 1115
Query: 138 GEGSPRPGPQDGERQGRPHLLRGPQGARAPAARDNKNA 175
EG P+ G P PQ A AA KN+
Sbjct: 1116 VEGEPQKGGGLPPAPS-PTSPASPQPPPAVAAPSEKNS 1152
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 36.2 bits (82), Expect = 0.020
Identities = 40/135 (29%), Positives = 51/135 (37%), Gaps = 26/135 (19%)
Query: 37 TSPSSFSSSSQNYLPPDQVPHSPVKSESRRLGPTATENKNLTAALPTGQRPGLQALGAHS 96
T+P S SSS + PP + P +PV + P ++T LP P L+ L S
Sbjct: 257 TTPISVSSSGASGAPPTKPPTTPVGGGNLPSAPPPANFPHVTPNLP--PPPALRPLNNAS 314
Query: 97 GVGGSCKHFGETKPPACGAAASPS--PAGHAKESRGREVWEPSGEGSPRPGPQDGERQG- 153
PP GA P P+ HA G G PGP+ G
Sbjct: 315 -----------ASPPGLGAQPLPGHLPSPHAM---------GQGMGGLPPGPEKGPTLAP 354
Query: 154 RPHLLRGPQGARAPA 168
PH L P + APA
Sbjct: 355 SPHSL-PPASSSAPA 368
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 36.2 bits (82), Expect = 0.020
Identities = 40/135 (29%), Positives = 51/135 (37%), Gaps = 26/135 (19%)
Query: 37 TSPSSFSSSSQNYLPPDQVPHSPVKSESRRLGPTATENKNLTAALPTGQRPGLQALGAHS 96
T+P S SSS + PP + P +PV + P ++T LP P L+ L S
Sbjct: 257 TTPISVSSSGASGAPPTKPPTTPVGGGNLPSAPPPANFPHVTPNLP--PPPALRPLNNAS 314
Query: 97 GVGGSCKHFGETKPPACGAAASPS--PAGHAKESRGREVWEPSGEGSPRPGPQDGERQG- 153
PP GA P P+ HA G G PGP+ G
Sbjct: 315 -----------ASPPGLGAQPLPGHLPSPHAM---------GQGMGGLPPGPEKGPTLAP 354
Query: 154 RPHLLRGPQGARAPA 168
PH L P + APA
Sbjct: 355 SPHSL-PPASSSAPA 368
>gi|239756047 PREDICTED: heparan sulfate 6-O-sulfotransferase 3
[Homo sapiens]
Length = 471
Score = 35.4 bits (80), Expect = 0.034
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 13/85 (15%)
Query: 101 SCKHFGETKPPACGAAASPSPAGHAKESRGR-EVWEPSGEGSPRPGPQDGERQGRPHLLR 159
SC +FGE P G A P+ G A+ ++ E WE + P P +G P
Sbjct: 33 SCTNFGEQ--PRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPP-------RGPPE--- 80
Query: 160 GPQGARAPAARDNKNADITGFGQEE 184
GP+GA AP D + D +EE
Sbjct: 81 GPRGAAAPEEEDEEPGDPREGEEEE 105
>gi|45580707 heparan sulfate 6-O-sulfotransferase 3 [Homo sapiens]
Length = 471
Score = 35.4 bits (80), Expect = 0.034
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 13/85 (15%)
Query: 101 SCKHFGETKPPACGAAASPSPAGHAKESRGR-EVWEPSGEGSPRPGPQDGERQGRPHLLR 159
SC +FGE P G A P+ G A+ ++ E WE + P P +G P
Sbjct: 33 SCTNFGEQ--PRAGEAGPPAVPGPARRAQAPPEEWERRPQLPPPP-------RGPPE--- 80
Query: 160 GPQGARAPAARDNKNADITGFGQEE 184
GP+GA AP D + D +EE
Sbjct: 81 GPRGAAAPEEEDEEPGDPREGEEEE 105
>gi|116268127 kinase non-catalytic C-lobe domain (KIND) containing 1
isoform a [Homo sapiens]
Length = 1749
Score = 35.4 bits (80), Expect = 0.034
Identities = 37/137 (27%), Positives = 53/137 (38%), Gaps = 27/137 (19%)
Query: 36 TTSPSSFSSSSQNYLPPDQVPHSPVKSESRRLGPTATENKNLTAALPTGQRPG----LQA 91
T P++F+S + ++ P ++ V + L +E + GQR G +
Sbjct: 664 TQLPAAFTSEATHFKPIVLAQNASVARDQPALAQEESEERG-------GQREGEGEEKLS 716
Query: 92 LGAHSGVGGSCKHFGETKPPACGAAASPSPAGHAKESRGREVWEPSGEGSPRPGPQDGER 151
L AH+G K P G P P G A E G V S +G P P PQ
Sbjct: 717 LEAHAGSPS-------LKTPD-GPVPGPGPQGAAPEPLGASVQRDSAQGRPCPPPQAPAN 768
Query: 152 QGRPHLLRGPQGARAPA 168
Q P+GA + A
Sbjct: 769 Q--------PEGASSAA 777
>gi|239757729 PREDICTED: hypothetical protein [Homo sapiens]
Length = 329
Score = 35.0 bits (79), Expect = 0.045
Identities = 36/134 (26%), Positives = 48/134 (35%), Gaps = 28/134 (20%)
Query: 47 QNYLPPDQVPHSPVKSES-----------RRLGPTATENKNLTAALPTGQRPGLQALGAH 95
+NY P DQ P SP + R P + K A+ P P + G H
Sbjct: 12 KNYKPQDQSPPSPQRDSGLTPERDRPDWPRSFKPPLSPEKGTKASGPQTSAPSPRDPGLH 71
Query: 96 SGVGGSCKHFGETKPPACGAAASPSPAGHAKESRGREVWEPSGEGSPRPGPQDGERQGRP 155
+ + G P +P P +P+G P P GE+Q RP
Sbjct: 72 TPPCSPRR--GRRGRPTQEVCPAPGPCA-----------QPAGTCPP---PPTGEKQPRP 115
Query: 156 HLLRGPQGA-RAPA 168
H R G+ RAPA
Sbjct: 116 HGFRCSHGSKRAPA 129
>gi|239752222 PREDICTED: hypothetical protein [Homo sapiens]
Length = 329
Score = 35.0 bits (79), Expect = 0.045
Identities = 36/134 (26%), Positives = 48/134 (35%), Gaps = 28/134 (20%)
Query: 47 QNYLPPDQVPHSPVKSES-----------RRLGPTATENKNLTAALPTGQRPGLQALGAH 95
+NY P DQ P SP + R P + K A+ P P + G H
Sbjct: 12 KNYKPQDQSPPSPQRDSGLTPERDRPDWPRSFKPPLSPEKGTKASGPQTSAPSPRDPGLH 71
Query: 96 SGVGGSCKHFGETKPPACGAAASPSPAGHAKESRGREVWEPSGEGSPRPGPQDGERQGRP 155
+ + G P +P P +P+G P P GE+Q RP
Sbjct: 72 TPPCSPRR--GRRGRPTQEVCPAPGPCA-----------QPAGTCPP---PPTGEKQPRP 115
Query: 156 HLLRGPQGA-RAPA 168
H R G+ RAPA
Sbjct: 116 HGFRCSHGSKRAPA 129
>gi|239746743 PREDICTED: hypothetical protein [Homo sapiens]
Length = 329
Score = 35.0 bits (79), Expect = 0.045
Identities = 36/134 (26%), Positives = 48/134 (35%), Gaps = 28/134 (20%)
Query: 47 QNYLPPDQVPHSPVKSES-----------RRLGPTATENKNLTAALPTGQRPGLQALGAH 95
+NY P DQ P SP + R P + K A+ P P + G H
Sbjct: 12 KNYKPQDQSPPSPQRDSGLTPERDRPDWPRSFKPPLSPEKGTKASGPQTSAPSPRDPGLH 71
Query: 96 SGVGGSCKHFGETKPPACGAAASPSPAGHAKESRGREVWEPSGEGSPRPGPQDGERQGRP 155
+ + G P +P P +P+G P P GE+Q RP
Sbjct: 72 TPPCSPRR--GRRGRPTQEVCPAPGPCA-----------QPAGTCPP---PPTGEKQPRP 115
Query: 156 HLLRGPQGA-RAPA 168
H R G+ RAPA
Sbjct: 116 HGFRCSHGSKRAPA 129
>gi|238908524 hypothetical protein LOC389333 [Homo sapiens]
Length = 1015
Score = 34.7 bits (78), Expect = 0.058
Identities = 31/112 (27%), Positives = 45/112 (40%), Gaps = 4/112 (3%)
Query: 61 KSESRRLGPTATENKNLTAALPTGQRPGLQALGAHSGVGGSCKHFGETKPPACGAAASPS 120
++E+ P L AL G+RP + + G GG + + G + S
Sbjct: 719 RAENSTAKPFKRTEIRLPGALALGRRPEVTSRVRARGPGGENRDVEAQRLVPDGDGRT-S 777
Query: 121 PAGHAKESRGREVWEPSGEGSPRPGPQDGERQGRPHLL---RGPQGARAPAA 169
P G A+ S R P+G SPRPG + P + + P A PAA
Sbjct: 778 PLGGARSSSQRSPVGPAGVRSPRPGSPQMQASPSPGIAPKPKTPPTAPEPAA 829
>gi|58218966 hypothetical protein LOC339201 [Homo sapiens]
Length = 193
Score = 34.7 bits (78), Expect = 0.058
Identities = 36/129 (27%), Positives = 47/129 (36%), Gaps = 31/129 (24%)
Query: 69 PTATENKNLTAALPTGQRPGLQALG--------AHSGVGGSCKHFGETKPPACGAAASPS 120
P+A + P +R GLQA AHS H+G + P AAA P
Sbjct: 5 PSAPQGALAAPRSPAVRRKGLQAPSWGSPGRPAAHSPWACGPPHWGPQRGPRNAAAARPG 64
Query: 121 P-----------AGHAKESRGREVWEPSGEGSPRPG---------PQ--DGERQGRPHLL 158
P G G ++ +P G G+P+PG PQ Q RP
Sbjct: 65 PRSRWHKRCAAACGACARPPGHQL-QPPGAGAPQPGVACSYLGPRPQRTPCSAQSRPGWC 123
Query: 159 RGPQGARAP 167
GP+ AP
Sbjct: 124 AGPRRRHAP 132
>gi|239754611 PREDICTED: hypothetical protein [Homo sapiens]
Length = 178
Score = 34.3 bits (77), Expect = 0.076
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 14/103 (13%)
Query: 57 HSPVKSESRRLGPTATE---NKNLTAALPTGQRPGLQALGAHSGVGGSCKHFGETKP--P 111
H+P E R GP T+ ++ L AA+ PGL G +C+ P P
Sbjct: 49 HTP---ELERGGPGPTDRRTSRRLRAAIVAAASPGLH------GRPAACRGHPRPTPARP 99
Query: 112 ACGAAASPSPAGHAKESRGREVWEPSGEGSPRPGPQDGERQGR 154
GA +P+ +G A G + P+G+ G + RQG+
Sbjct: 100 PTGAPEAPALSGRAARLHGAQRGAPAGQARHGAGNRHPPRQGQ 142
>gi|239749157 PREDICTED: hypothetical protein XP_002346930 [Homo
sapiens]
Length = 178
Score = 34.3 bits (77), Expect = 0.076
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 14/103 (13%)
Query: 57 HSPVKSESRRLGPTATE---NKNLTAALPTGQRPGLQALGAHSGVGGSCKHFGETKP--P 111
H+P E R GP T+ ++ L AA+ PGL G +C+ P P
Sbjct: 49 HTP---ELERGGPGPTDCRTSRRLRAAIVAAASPGLH------GRPAACRGHPRPTPARP 99
Query: 112 ACGAAASPSPAGHAKESRGREVWEPSGEGSPRPGPQDGERQGR 154
GA +P+ +G A G + P+G+ G + RQG+
Sbjct: 100 PTGAPEAPALSGRAARLHGAQRGAPAGQARHGAGNRHPPRQGQ 142
>gi|239743220 PREDICTED: hypothetical protein XP_002342806 [Homo
sapiens]
Length = 178
Score = 34.3 bits (77), Expect = 0.076
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 14/103 (13%)
Query: 57 HSPVKSESRRLGPTATE---NKNLTAALPTGQRPGLQALGAHSGVGGSCKHFGETKP--P 111
H+P E R GP T+ ++ L AA+ PGL G +C+ P P
Sbjct: 49 HTP---ELERGGPGPTDCRTSRRLRAAIVAAASPGLH------GRPAACRGHPRPTPARP 99
Query: 112 ACGAAASPSPAGHAKESRGREVWEPSGEGSPRPGPQDGERQGR 154
GA +P+ +G A G + P+G+ G + RQG+
Sbjct: 100 PTGAPEAPALSGRAARLHGAQRGAPAGQARHGAGNRHPPRQGQ 142
>gi|239508892 PREDICTED: hypothetical protein [Homo sapiens]
Length = 178
Score = 34.3 bits (77), Expect = 0.076
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 14/103 (13%)
Query: 57 HSPVKSESRRLGPTATE---NKNLTAALPTGQRPGLQALGAHSGVGGSCKHFGETKP--P 111
H+P E R GP T+ ++ L AA+ PGL G +C+ P P
Sbjct: 49 HTP---ELERGGPGPTDCRTSRRLRAAIVAAASPGLH------GRPAACRGHPRPTPARP 99
Query: 112 ACGAAASPSPAGHAKESRGREVWEPSGEGSPRPGPQDGERQGR 154
GA +P+ +G A G + P+G+ G + RQG+
Sbjct: 100 PTGAPEAPALSGRAARLHGAQRGAPAGQARHGAGNRHPPRQGQ 142
>gi|21536357 TBP-associated factor 6 isoform delta [Homo sapiens]
Length = 667
Score = 34.3 bits (77), Expect = 0.076
Identities = 41/168 (24%), Positives = 61/168 (36%), Gaps = 39/168 (23%)
Query: 3 APSGPAGSLGTTPFILQKHSYGWTQGHSVLAITTTSPSSFSSSSQNYLPPDQVPHSPVKS 62
A + P S T FI+ S VL+++T++P S S+++ SPV +
Sbjct: 515 AAAPPQPSPPPTKFIVMSSSSSAPSTQQVLSLSTSAPGSGSTTT-----------SPVTT 563
Query: 63 ESRRLGPTATENKNLTAALPTGQRPGLQALGAH---------SGVGGSCKHFGETKPPA- 112
+ P T A P+ G ++ + G GG H PPA
Sbjct: 564 TVPSVQPIVKLVSTATTAPPSTAPSGPGSVQKYIVVSLPPTGEGKGGPTSHPSPVPPPAS 623
Query: 113 ----------CG----AAASPSPAGHAKESRGREVWEPSGEGSPRPGP 146
CG A SP PA ++ G + GSP+P P
Sbjct: 624 SPSPLSGSALCGGKQEAGDSPPPAPGTPKANGSQ----PNSGSPQPAP 667
>gi|21536355 TBP-associated factor 6 isoform gamma [Homo sapiens]
Length = 667
Score = 34.3 bits (77), Expect = 0.076
Identities = 41/168 (24%), Positives = 61/168 (36%), Gaps = 39/168 (23%)
Query: 3 APSGPAGSLGTTPFILQKHSYGWTQGHSVLAITTTSPSSFSSSSQNYLPPDQVPHSPVKS 62
A + P S T FI+ S VL+++T++P S S+++ SPV +
Sbjct: 515 AAAPPQPSPPPTKFIVMSSSSSAPSTQQVLSLSTSAPGSGSTTT-----------SPVTT 563
Query: 63 ESRRLGPTATENKNLTAALPTGQRPGLQALGAH---------SGVGGSCKHFGETKPPA- 112
+ P T A P+ G ++ + G GG H PPA
Sbjct: 564 TVPSVQPIVKLVSTATTAPPSTAPSGPGSVQKYIVVSLPPTGEGKGGPTSHPSPVPPPAS 623
Query: 113 ----------CG----AAASPSPAGHAKESRGREVWEPSGEGSPRPGP 146
CG A SP PA ++ G + GSP+P P
Sbjct: 624 SPSPLSGSALCGGKQEAGDSPPPAPGTPKANGSQ----PNSGSPQPAP 667
>gi|5032147 TBP-associated factor 6 isoform alpha [Homo sapiens]
Length = 677
Score = 34.3 bits (77), Expect = 0.076
Identities = 41/168 (24%), Positives = 61/168 (36%), Gaps = 39/168 (23%)
Query: 3 APSGPAGSLGTTPFILQKHSYGWTQGHSVLAITTTSPSSFSSSSQNYLPPDQVPHSPVKS 62
A + P S T FI+ S VL+++T++P S S+++ SPV +
Sbjct: 525 AAAPPQPSPPPTKFIVMSSSSSAPSTQQVLSLSTSAPGSGSTTT-----------SPVTT 573
Query: 63 ESRRLGPTATENKNLTAALPTGQRPGLQALGAH---------SGVGGSCKHFGETKPPA- 112
+ P T A P+ G ++ + G GG H PPA
Sbjct: 574 TVPSVQPIVKLVSTATTAPPSTAPSGPGSVQKYIVVSLPPTGEGKGGPTSHPSPVPPPAS 633
Query: 113 ----------CG----AAASPSPAGHAKESRGREVWEPSGEGSPRPGP 146
CG A SP PA ++ G + GSP+P P
Sbjct: 634 SPSPLSGSALCGGKQEAGDSPPPAPGTPKANGSQ----PNSGSPQPAP 677
>gi|21536359 TBP-associated factor 6 isoform alpha [Homo sapiens]
Length = 677
Score = 34.3 bits (77), Expect = 0.076
Identities = 41/168 (24%), Positives = 61/168 (36%), Gaps = 39/168 (23%)
Query: 3 APSGPAGSLGTTPFILQKHSYGWTQGHSVLAITTTSPSSFSSSSQNYLPPDQVPHSPVKS 62
A + P S T FI+ S VL+++T++P S S+++ SPV +
Sbjct: 525 AAAPPQPSPPPTKFIVMSSSSSAPSTQQVLSLSTSAPGSGSTTT-----------SPVTT 573
Query: 63 ESRRLGPTATENKNLTAALPTGQRPGLQALGAH---------SGVGGSCKHFGETKPPA- 112
+ P T A P+ G ++ + G GG H PPA
Sbjct: 574 TVPSVQPIVKLVSTATTAPPSTAPSGPGSVQKYIVVSLPPTGEGKGGPTSHPSPVPPPAS 633
Query: 113 ----------CG----AAASPSPAGHAKESRGREVWEPSGEGSPRPGP 146
CG A SP PA ++ G + GSP+P P
Sbjct: 634 SPSPLSGSALCGGKQEAGDSPPPAPGTPKANGSQ----PNSGSPQPAP 677
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.129 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,874,269
Number of Sequences: 37866
Number of extensions: 674074
Number of successful extensions: 3240
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 377
Number of HSP's that attempted gapping in prelim test: 2921
Number of HSP's gapped (non-prelim): 667
length of query: 205
length of database: 18,247,518
effective HSP length: 97
effective length of query: 108
effective length of database: 14,574,516
effective search space: 1574047728
effective search space used: 1574047728
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.