Guide to the Human Genome
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Name: LOC100289070 Sequence: fasta or formatted (178aa) NCBI GI: 239743220
Description:

PREDICTED: hypothetical protein XP_002342806

Not currently referenced in the text

Other entries for this name:
alt mRNA {178aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.8         21           3
 C cysteine            3.9          7           1
 D aspartate           1.7          3           1
 E glutamate           4.5          8           2
 F phenylalanine       2.8          5           2
 G glycine            13.5         24           3
 H histidine           5.1          9           1
 I isoleucine          2.2          4           2
 K lysine              1.1          2           1
 L leucine             6.2         11           2
 M methionine          1.1          2           1
 N asparagine          1.7          3           1
 P proline            14.6         26           2
 Q glutamine           4.5          8           1
 R arginine           10.7         19           2
 S serine              5.6         10           2
 T threonine           4.5          8           1
 V valine              3.9          7           3
 W tryptophan          0.0          0           0
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342806 
LOC100290693          1.000   PREDICTED: hypothetical protein XP_002346930 
LOC100289070          1.000   PREDICTED: hypothetical protein 
LOC100293115          0.986   PREDICTED: hypothetical protein 
ZFR2                  0.050   zinc finger RNA binding protein 2 isoform 1 
LOC284988             0.048   PREDICTED: hypothetical protein 
NKX1-1                0.048   PREDICTED: HPX-153 homeobox 
HCN2                  0.045   hyperpolarization activated cyclic nucleotide-gated...
LOC100290612          0.045   PREDICTED: hypothetical protein XP_002348127 
BBC3                  0.042   BCL2 binding component 3 isoform 1 
LOC100289242          0.042   PREDICTED: hypothetical protein XP_002342243 
SEMA6C                0.042   semaphorin Y 
C5orf33               0.042   hypothetical protein LOC133686 isoform 1 
SFPQ                  0.042   splicing factor proline/glutamine rich (polypyrimidin...
NKX1-1                0.039   PREDICTED: NK1 homeobox 1 
GNAS                  0.039   GNAS complex locus XLas 
GGN                   0.039   gametogenetin 
CACNA1A               0.039   calcium channel, alpha 1A subunit isoform 4 
VASP                  0.036   vasodilator-stimulated phosphoprotein 
C1orf229              0.036   hypothetical protein LOC388759 
TBKBP1                0.036   TBK1 binding protein 1 
LOC100291243          0.036   PREDICTED: hypothetical protein XP_002348077 
LOC100134105          0.034   PREDICTED: similar to hCG1793472 
SF3B4                 0.034   splicing factor 3b, subunit 4 
SCARF2                0.034   scavenger receptor class F, member 2 isoform 1 [Homo...
SCARF2                0.034   scavenger receptor class F, member 2 isoform 2 [Homo...
RBM15                 0.034   RNA binding motif protein 15 
SAMD1                 0.034   sterile alpha motif domain containing 1 
LOC100293129          0.034   PREDICTED: hypothetical protein 
BEND4                 0.034   BEN domain containing 4 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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