Guide to the Human Genome
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Name: LOC100131773 Sequence: fasta or formatted (591aa) NCBI GI: 239747656
Description:

PREDICTED: similar to mCG116201

Not currently referenced in the text

Other entries for this name:
alt prot {307aa} PREDICTED: similar to hCG1782152
alt prot {307aa} PREDICTED: similar to hCG1782152
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         44           3
 C cysteine            2.4         14           1
 D aspartate           4.2         25           1
 E glutamate           5.1         30           2
 F phenylalanine       3.0         18           1
 G glycine            10.5         62           3
 H histidine           3.7         22           1
 I isoleucine          2.9         17           2
 K lysine              3.9         23           2
 L leucine             9.8         58           3
 M methionine          1.9         11           2
 N asparagine          2.7         16           1
 P proline             6.4         38           2
 Q glutamine           6.1         36           2
 R arginine            6.8         40           2
 S serine              8.3         49           3
 T threonine           6.6         39           5
 V valine              5.6         33           2
 W tryptophan          0.8          5           1
 X unknown             0.2          1           1
 Y tyrosine            1.7         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to mCG116201 
LOC100131773          0.225   PREDICTED: similar to hCG1782152 
LOC100131773          0.225   PREDICTED: similar to hCG1782152 
KIF1B                 0.166   kinesin family member 1B isoform alpha 
KIF1B                 0.166   kinesin family member 1B isoform b 
KIF1C                 0.164   kinesin family member 1C 
KIF1A                 0.162   axonal transport of synaptic vesicles 
KIF13A                0.160   kinesin family member 13A isoform d 
KIF13A                0.160   kinesin family member 13A isoform c 
KIF13A                0.160   kinesin family member 13A isoform b 
KIF13A                0.160   kinesin family member 13A isoform a 
KIF13B                0.152   kinesin family member 13B 
KIF16B                0.149   kinesin-like motor protein C20orf23 
KIF14                 0.131   kinesin family member 14 
STARD9                0.128   PREDICTED: StAR-related lipid transfer (START) doma...
STARD9                0.128   PREDICTED: StAR-related lipid transfer (START) doma...
STARD9                0.128   PREDICTED: StAR-related lipid transfer (START) doma...
KIF3B                 0.126   kinesin family member 3B 
KIF17                 0.117   kinesin family member 17 isoform b 
KIF17                 0.117   kinesin family member 17 isoform a 
KIF4A                 0.116   kinesin family member 4 
KIF4B                 0.116   kinesin family member 4B 
KIF3A                 0.114   kinesin family member 3A 
KIF3C                 0.114   kinesin family member 3C 
KIF18B                0.109   kinesin family member 18B 
KIF21B                0.105   kinesin family member 21B 
KIF15                 0.105   kinesin family member 15 
KIF18A                0.103   kinesin family member 18A 
KIFC3                 0.103   kinesin family member C3 isoform 2 
KIFC3                 0.103   kinesin family member C3 isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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