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Search of human proteins with 239742249
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239742249 PREDICTED: hypothetical protein XP_002342465 [Homo
sapiens]
(179 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239742249 PREDICTED: hypothetical protein XP_002342465 [Homo ... 393 e-110
gi|239755571 PREDICTED: hypothetical protein [Homo sapiens] 46 2e-05
gi|239744417 PREDICTED: similar to hCG2023245 [Homo sapiens] 44 1e-04
gi|239742114 PREDICTED: similar to hCG2023245 [Homo sapiens] 44 1e-04
gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3 pre... 42 4e-04
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 40 8e-04
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 40 8e-04
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 40 8e-04
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 40 8e-04
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 40 8e-04
gi|19924099 synapsin I isoform Ia [Homo sapiens] 40 8e-04
gi|19924097 synapsin I isoform Ib [Homo sapiens] 40 8e-04
gi|169183882 PREDICTED: hypothetical protein [Homo sapiens] 40 0.001
gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo s... 40 0.001
gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo s... 40 0.001
gi|163965366 nascent polypeptide-associated complex alpha subuni... 40 0.001
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 39 0.002
gi|18641360 collectin sub-family member 12 [Homo sapiens] 39 0.002
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 39 0.002
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 39 0.002
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 39 0.002
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 39 0.002
gi|169179759 PREDICTED: hypothetical protein [Homo sapiens] 39 0.002
gi|4758416 golgi-specific brefeldin A resistant guanine nucleoti... 39 0.002
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 39 0.003
gi|169180158 PREDICTED: hypothetical protein [Homo sapiens] 39 0.003
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 39 0.003
gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2 pre... 39 0.003
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens] 38 0.004
gi|148806908 fibronectin type III domain containing 1 [Homo sapi... 38 0.004
>gi|239742249 PREDICTED: hypothetical protein XP_002342465 [Homo
sapiens]
Length = 179
Score = 393 bits (1010), Expect = e-110
Identities = 179/179 (100%), Positives = 179/179 (100%)
Query: 1 MAPGGITPPLEAQQPWRGGVSGSQGLQVWNSNPKCQLCGHQPRNTGLWPNRSSFQTDISK 60
MAPGGITPPLEAQQPWRGGVSGSQGLQVWNSNPKCQLCGHQPRNTGLWPNRSSFQTDISK
Sbjct: 1 MAPGGITPPLEAQQPWRGGVSGSQGLQVWNSNPKCQLCGHQPRNTGLWPNRSSFQTDISK 60
Query: 61 SAGNTGCATAAPAHGGWQWAPLAQGQLSHRPSGTDRKVAPRGPTQPPARRGNHLRPPQSP 120
SAGNTGCATAAPAHGGWQWAPLAQGQLSHRPSGTDRKVAPRGPTQPPARRGNHLRPPQSP
Sbjct: 61 SAGNTGCATAAPAHGGWQWAPLAQGQLSHRPSGTDRKVAPRGPTQPPARRGNHLRPPQSP 120
Query: 121 GASRAQEPKFPASGHQHSPGCPRAGGPLRGEPGPYGPESFPSTCHTARKLRASPARRPL 179
GASRAQEPKFPASGHQHSPGCPRAGGPLRGEPGPYGPESFPSTCHTARKLRASPARRPL
Sbjct: 121 GASRAQEPKFPASGHQHSPGCPRAGGPLRGEPGPYGPESFPSTCHTARKLRASPARRPL 179
>gi|239755571 PREDICTED: hypothetical protein [Homo sapiens]
Length = 261
Score = 45.8 bits (107), Expect = 2e-05
Identities = 48/153 (31%), Positives = 56/153 (36%), Gaps = 29/153 (18%)
Query: 15 PWRGGVSGSQGLQVWNSNPKCQLCGHQPRNTGLWPNRSSFQTDISKSAGNTGCATAAPAH 74
PW G SG C L G R WP R+ Q S G A P
Sbjct: 12 PWAGRPSG------------CNLVG-AGRRCRAWPERAWPQAGDSDCLGQGRRAQRRPGP 58
Query: 75 G-------GWQWAPLAQGQLSHRPSGTDR-KVAPRGPTQPPARRGNHL------RPPQSP 120
G G Q AP + + + P+ APRGPT+P RR + P SP
Sbjct: 59 GVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSSP 118
Query: 121 GASRAQEPKFPASGHQHSPGCPRA--GGPLRGE 151
GA RA SG + G PR G P R E
Sbjct: 119 GAGRAPGAMASPSGSSKATGKPRGRDGRPRREE 151
>gi|239744417 PREDICTED: similar to hCG2023245 [Homo sapiens]
Length = 364
Score = 43.5 bits (101), Expect = 1e-04
Identities = 43/133 (32%), Positives = 51/133 (38%), Gaps = 17/133 (12%)
Query: 35 CQLCGHQPRNTGLWPNRSSFQTDISKSAGNTGCATAAPAHG-------GWQWAPLAQGQL 87
C L G R WP R+ Q S G A P G G Q AP + +
Sbjct: 123 CNLVG-AGRRCRAWPERAWPQAGDSDCLGQGRRAQRRPGPGVSAVGASGQQRAPESNERP 181
Query: 88 SHRPSGTDR-KVAPRGPTQPPARRGNHL------RPPQSPGASRAQEPKFPASGHQHSPG 140
+ P+ APRGPT+P RR + P SPGA RA SG + G
Sbjct: 182 AEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGAGRAPGAMASPSGSSKATG 241
Query: 141 CPRA--GGPLRGE 151
PR G P R E
Sbjct: 242 KPRGRDGRPRREE 254
>gi|239742114 PREDICTED: similar to hCG2023245 [Homo sapiens]
Length = 329
Score = 43.5 bits (101), Expect = 1e-04
Identities = 34/95 (35%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Query: 66 GCATAAPAHGGWQWAPLAQGQLSHRPS-GTDRKVAPRGPTQPPARRGNHL------RPPQ 118
G +A + GG Q AP +Q + + + APRGPT+P RR + P
Sbjct: 89 GPGVSAVSAGGQQRAPESQERPAEESAPALMPSSAPRGPTEPAFRRPSSADRPLAPGPSS 148
Query: 119 SPGASRAQEPKFPASGHQHSPGCPRA--GGPLRGE 151
SPGA RA SG + G PR GGP R E
Sbjct: 149 SPGAGRAPRAMASPSGSSEATGKPRGRDGGPRREE 183
>gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3
preproprotein [Homo sapiens]
Length = 178
Score = 41.6 bits (96), Expect = 4e-04
Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Query: 55 QTDISKSAGNT-GCATAAPAHGGWQWAPLAQGQLSHRPSGTDRKVAPRGPTQPPARRGNH 113
Q D S+S + G P GG P AQG + + + P P PP + GN+
Sbjct: 83 QGDKSRSPRSPPGKPQGPPPQGGKPQGPPAQGGSKSQSA----RSPPGKPQGPPQQEGNN 138
Query: 114 LRPPQSPGASRAQEPKFPASGHQHSPGCPRAGG 146
+ P P Q+P+ P +G P P GG
Sbjct: 139 PQGPPPPAGGNPQQPQAPPAGQPQGPPRPPQGG 171
Score = 35.0 bits (79), Expect = 0.034
Identities = 32/99 (32%), Positives = 40/99 (40%), Gaps = 18/99 (18%)
Query: 72 PAHGGWQWAPLAQGQLSHRPS---GTDRKVAPRG--PTQPPARRGNHLR----------- 115
P G P QG S P G + P+G P PPA+ G+ +
Sbjct: 71 PPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGKPQGPPAQGGSKSQSARSPPGKPQG 130
Query: 116 PPQSPGASRAQEPKFPASGHQHSPGCPRAGGPLRGEPGP 154
PPQ G + Q P PA G+ P P AG P +G P P
Sbjct: 131 PPQQEG-NNPQGPPPPAGGNPQQPQAPPAGQP-QGPPRP 167
Score = 32.7 bits (73), Expect = 0.17
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 100 PRGPTQPPARRGNHLRPPQSPGASRAQEPKFPASGHQHSP-----GCPRAGGPLRGEPGP 154
P P PP + GN + P PG + P+ S SP G P GG +G P
Sbjct: 54 PGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGKPQGPPAQ 113
Query: 155 YGPES 159
G +S
Sbjct: 114 GGSKS 118
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 40.4 bits (93), Expect = 8e-04
Identities = 51/172 (29%), Positives = 61/172 (35%), Gaps = 18/172 (10%)
Query: 3 PGGITPPLEAQQPWRGGVSGSQGLQVWNSNPKCQLCGHQPRNTGLWPNRSSFQTDISKSA 62
PG PP EA +P GV G G S + + G P + + +
Sbjct: 646 PGPAGPPGEAGKPGEQGVPGDLGAP-GPSGARGER-GFPGERGVQGPPGPAGPRGANGAP 703
Query: 63 GNTGCA--TAAPAHGGWQWAPLAQGQLSHR-------PSGTDRKVAPRGPTQPPARRG-- 111
GN G AP G Q AP QG R P G P+G P + G
Sbjct: 704 GNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVR 763
Query: 112 ---NHLRPPQSPGASRAQEPKFPASGHQHSPGCPRAGGPLRGEPGPYGPESF 160
+ PP GA + P SG G A G RGEPGP GP F
Sbjct: 764 GLTGPIGPPGPAGAPGDKGESGP-SGPAGPTGARGAPGD-RGEPGPPGPAGF 813
Score = 37.4 bits (85), Expect = 0.007
Identities = 45/152 (29%), Positives = 55/152 (36%), Gaps = 25/152 (16%)
Query: 14 QPWRGGVSGSQGLQVWNSNPKCQ-LCGHQPRNTGLWPNRSSFQTDISKSAGNTGCATAAP 72
QP G +G+ G+ P + G Q P +S + S G+TG A P
Sbjct: 393 QPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTG-AKGEP 451
Query: 73 AHGGWQWAPLAQGQLSHRPSGTDRKVAPRGPTQPPARRGNHLRPPQS---PGASRAQEPK 129
G Q P G+ R G + P G PP RG P S PGA PK
Sbjct: 452 GPVGVQGPPGPAGEEGKR--GARGEPGPTGLPGPPGERGG----PGSRGFPGADGVAGPK 505
Query: 130 FPASGHQHSPGCPRAGGPLRGEPGPYGPESFP 161
PA RG PGP GP+ P
Sbjct: 506 GPAGE--------------RGSPGPAGPKGSP 523
Score = 36.2 bits (82), Expect = 0.015
Identities = 27/71 (38%), Positives = 28/71 (39%), Gaps = 9/71 (12%)
Query: 91 PSGTDRKVAPRGPTQPPARRGNHLRPPQSPGASRAQEPKFPASGHQHSPGCPRAGGPLRG 150
PSG + P GP PP G PP G A A G G P A G RG
Sbjct: 987 PSGASGERGPPGPMGPPGLAG----PPGESGREGAPG----AEGSPGRDGSPGAKGD-RG 1037
Query: 151 EPGPYGPESFP 161
E GP GP P
Sbjct: 1038 ETGPAGPPGAP 1048
Score = 33.9 bits (76), Expect = 0.077
Identities = 29/103 (28%), Positives = 40/103 (38%), Gaps = 16/103 (15%)
Query: 71 APAHGGWQWAPLAQGQLSHRPSGTDRKVAPRGPTQPPARRGN--HLRPPQSPGASRAQEP 128
AP G+Q P G+ G + PRGP PP + G+ P PG P
Sbjct: 195 APGPQGFQGPPGEPGE-----PGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGP 249
Query: 129 KFPASGHQHSPGCPRAGG--------PLRGEPGPYGPESFPST 163
+ A G + G P G +G+ GP GP+ P +
Sbjct: 250 Q-GARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGS 291
Score = 32.3 bits (72), Expect = 0.22
Identities = 34/119 (28%), Positives = 41/119 (34%), Gaps = 20/119 (16%)
Query: 59 SKSAGNTGCATAA--------PAHGGWQWAPLAQGQLSHRPSGTDRKV-------APRGP 103
S AG TG A P G+ P A GQ + D P GP
Sbjct: 787 SGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGP 846
Query: 104 TQPPARRGNHLRPPQSPGASRAQEPK----FPASGHQHSPGCPRAGGPLRGEPGPYGPE 158
PP GN + P + GA + P FP + + P P G PGP G E
Sbjct: 847 AGPPGPIGN-VGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKE 904
Score = 31.6 bits (70), Expect = 0.38
Identities = 26/89 (29%), Positives = 29/89 (32%), Gaps = 19/89 (21%)
Query: 91 PSGTDRKVAPRGPTQPPARRG-----------NHLRPPQSPGASRAQEPKFPASGHQHSP 139
P G PRGP PP R G PP PG P+ + S
Sbjct: 113 PKGDTGPRGPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKST 172
Query: 140 GCPRAGGP--------LRGEPGPYGPESF 160
G GP L G PG GP+ F
Sbjct: 173 GGISVPGPMGPSGPRGLPGPPGAPGPQGF 201
Score = 31.2 bits (69), Expect = 0.50
Identities = 30/83 (36%), Positives = 36/83 (43%), Gaps = 13/83 (15%)
Query: 76 GWQWAPLAQGQLSHRPS-GTDRKVAPRGPTQPPARRGNHLRPPQSPGASRAQEPKFPASG 134
G + P A G R + G P GPT P PP PGA A+ P G
Sbjct: 308 GERGRPGAPGPAGARGNDGATGAAGPPGPTGPAG-------PPGFPGAVGAKGEAGP-QG 359
Query: 135 HQHSPGCPRAGGPLRGEPGPYGP 157
+ S G P+ +RGEPGP GP
Sbjct: 360 PRGSEG-PQG---VRGEPGPPGP 378
Score = 31.2 bits (69), Expect = 0.50
Identities = 47/180 (26%), Positives = 60/180 (33%), Gaps = 37/180 (20%)
Query: 3 PGGITPPLEAQQPWRGGVSGSQGLQVWNSNPKCQLCGHQPRNTGLWPNRSSFQTDISKSA 62
PG + PP A P G G+ G + G R+ +T +
Sbjct: 997 PGPMGPPGLAGPPGESGREGAPGAE-----------GSPGRDGSPGAKGDRGETGPAGPP 1045
Query: 63 GNTGCATAAPAHGGWQWAPLAQGQLSHR-PSGTDRKVAPRGPTQPPARRGNH-------- 113
G G A AP G +G+ P+G V RGP P RG+
Sbjct: 1046 GAPG-APGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGD 1104
Query: 114 -----------LRPPQSPGASRAQEPKFPASGHQHSPGCP-RAGGP----LRGEPGPYGP 157
L+ P P S ++ ASG G P AG P L G PGP GP
Sbjct: 1105 RGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGP 1164
Score = 30.0 bits (66), Expect = 1.1
Identities = 23/69 (33%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
Query: 91 PSGTDRKVAPRGPTQPPARRGNHLRPPQSPGASRAQEPKFPAS--GHQHSPGCPRAGGPL 148
P G V P G P + + P+ R P+ PA G PG P GP
Sbjct: 87 PEGECCPVCPDGSESPTDQETTGVEGPKGDTGPRG--PRGPAGPPGRDGIPGQPGLPGP- 143
Query: 149 RGEPGPYGP 157
G PGP GP
Sbjct: 144 PGPPGPPGP 152
Score = 28.5 bits (62), Expect = 3.2
Identities = 33/118 (27%), Positives = 42/118 (35%), Gaps = 26/118 (22%)
Query: 62 AGNTGCATAAPAHGGWQWAPLAQGQLSHRPSGTDRKVAPRGPTQPPARRGNHLR--PPQS 119
+GN G P G + +G+ P+G +V P GP P +G+ P +
Sbjct: 889 SGNAG-PPGPPGPAGKEGGKGPRGETG--PAGRPGEVGPPGPPGPAGEKGSPGADGPAGA 945
Query: 120 PGASRAQ----------------EPKFPA----SGHQHSPGCPRAGGPLRGEPGPYGP 157
PG Q E FP SG G A G RG PGP GP
Sbjct: 946 PGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGE-RGPPGPMGP 1002
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 40.4 bits (93), Expect = 8e-04
Identities = 26/65 (40%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 100 PRGPTQPPARRGNHLRPPQSPGA-SRAQEPKFPASGHQHSPGCPRAGGPLRGEPGPYGPE 158
P GP PP G PP PG+ + +P P G PG P G P G PGP G +
Sbjct: 657 PPGPPGPPGHPGPQ-GPPGIPGSLGKCGDPGLP--GPDGEPGIPGIGFP--GPPGPKGDQ 711
Query: 159 SFPST 163
FP T
Sbjct: 712 GFPGT 716
Score = 30.4 bits (67), Expect = 0.85
Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 12/65 (18%)
Query: 100 PRGPTQPPARRGNHLRPPQSPGASRAQEPKFPASGHQHSPGCPRAGGPLRGEPGPYGPES 159
P GP PP RG+ PG + G PG P G ++GEPGP GP
Sbjct: 1335 PIGPKGPPGVRGD-------PGTLKI----ISLPGSPGPPGTPGEPG-MQGEPGPPGPPG 1382
Query: 160 FPSTC 164
C
Sbjct: 1383 NLGPC 1387
Score = 30.0 bits (66), Expect = 1.1
Identities = 44/177 (24%), Positives = 55/177 (31%), Gaps = 42/177 (23%)
Query: 19 GVSGSQGLQVWNSNPKCQLCGHQPRNTGL--WPNRSSFQTDISKSAGNTGCATAAPAHGG 76
G+ G QG +P P NTGL +P Q D G G G
Sbjct: 499 GIPGRQGAAGLKGSPG------SPGNTGLPGFPGFPGAQGDPGLK-GEKGETLQPEGQVG 551
Query: 77 WQWAPLAQGQLSHR-------PSGTDRKVAPRGPTQPPARRGNHLRPPQSPGASRAQEPK 129
P +GQ + G P+G +G+ PP PG+ + P
Sbjct: 552 VPGDPGLRGQPGRKGLDGIPGTPGVKGLPGPKGELALSGEKGDQ-GPPGDPGSPGSPGPA 610
Query: 130 FPAS-------------GHQHSPGCPRAGG------------PLRGEPGPYGPESFP 161
PA G Q PG P G P+ G PGP GP P
Sbjct: 611 GPAGPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSVSTPVPGPPGPPGPPGHP 667
Score = 27.7 bits (60), Expect = 5.5
Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 127 EPKFPASGHQHSPGCPRAGGPLRGEPGPYGPESFP 161
E FP G SPG GP G PGP GP+ FP
Sbjct: 50 EKGFP--GPPGSPGQKGFTGP-EGLPGPQGPKGFP 81
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 40.4 bits (93), Expect = 8e-04
Identities = 26/65 (40%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 100 PRGPTQPPARRGNHLRPPQSPGA-SRAQEPKFPASGHQHSPGCPRAGGPLRGEPGPYGPE 158
P GP PP G PP PG+ + +P P G PG P G P G PGP G +
Sbjct: 657 PPGPPGPPGHPGPQ-GPPGIPGSLGKCGDPGLP--GPDGEPGIPGIGFP--GPPGPKGDQ 711
Query: 159 SFPST 163
FP T
Sbjct: 712 GFPGT 716
Score = 30.4 bits (67), Expect = 0.85
Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 12/65 (18%)
Query: 100 PRGPTQPPARRGNHLRPPQSPGASRAQEPKFPASGHQHSPGCPRAGGPLRGEPGPYGPES 159
P GP PP RG+ PG + G PG P G ++GEPGP GP
Sbjct: 1335 PIGPKGPPGVRGD-------PGTLKI----ISLPGSPGPPGTPGEPG-MQGEPGPPGPPG 1382
Query: 160 FPSTC 164
C
Sbjct: 1383 NLGPC 1387
Score = 30.0 bits (66), Expect = 1.1
Identities = 44/177 (24%), Positives = 55/177 (31%), Gaps = 42/177 (23%)
Query: 19 GVSGSQGLQVWNSNPKCQLCGHQPRNTGL--WPNRSSFQTDISKSAGNTGCATAAPAHGG 76
G+ G QG +P P NTGL +P Q D G G G
Sbjct: 499 GIPGRQGAAGLKGSPG------SPGNTGLPGFPGFPGAQGDPGLK-GEKGETLQPEGQVG 551
Query: 77 WQWAPLAQGQLSHR-------PSGTDRKVAPRGPTQPPARRGNHLRPPQSPGASRAQEPK 129
P +GQ + G P+G +G+ PP PG+ + P
Sbjct: 552 VPGDPGLRGQPGRKGLDGIPGTPGVKGLPGPKGELALSGEKGDQ-GPPGDPGSPGSPGPA 610
Query: 130 FPAS-------------GHQHSPGCPRAGG------------PLRGEPGPYGPESFP 161
PA G Q PG P G P+ G PGP GP P
Sbjct: 611 GPAGPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSVSTPVPGPPGPPGPPGHP 667
Score = 27.7 bits (60), Expect = 5.5
Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 127 EPKFPASGHQHSPGCPRAGGPLRGEPGPYGPESFP 161
E FP G SPG GP G PGP GP+ FP
Sbjct: 50 EKGFP--GPPGSPGQKGFTGP-EGLPGPQGPKGFP 81
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 40.4 bits (93), Expect = 8e-04
Identities = 26/65 (40%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 100 PRGPTQPPARRGNHLRPPQSPGA-SRAQEPKFPASGHQHSPGCPRAGGPLRGEPGPYGPE 158
P GP PP G PP PG+ + +P P G PG P G P G PGP G +
Sbjct: 657 PPGPPGPPGHPGPQ-GPPGIPGSLGKCGDPGLP--GPDGEPGIPGIGFP--GPPGPKGDQ 711
Query: 159 SFPST 163
FP T
Sbjct: 712 GFPGT 716
Score = 30.4 bits (67), Expect = 0.85
Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 12/65 (18%)
Query: 100 PRGPTQPPARRGNHLRPPQSPGASRAQEPKFPASGHQHSPGCPRAGGPLRGEPGPYGPES 159
P GP PP RG+ PG + G PG P G ++GEPGP GP
Sbjct: 1335 PIGPKGPPGVRGD-------PGTLKI----ISLPGSPGPPGTPGEPG-MQGEPGPPGPPG 1382
Query: 160 FPSTC 164
C
Sbjct: 1383 NLGPC 1387
Score = 30.0 bits (66), Expect = 1.1
Identities = 44/177 (24%), Positives = 55/177 (31%), Gaps = 42/177 (23%)
Query: 19 GVSGSQGLQVWNSNPKCQLCGHQPRNTGL--WPNRSSFQTDISKSAGNTGCATAAPAHGG 76
G+ G QG +P P NTGL +P Q D G G G
Sbjct: 499 GIPGRQGAAGLKGSPG------SPGNTGLPGFPGFPGAQGDPGLK-GEKGETLQPEGQVG 551
Query: 77 WQWAPLAQGQLSHR-------PSGTDRKVAPRGPTQPPARRGNHLRPPQSPGASRAQEPK 129
P +GQ + G P+G +G+ PP PG+ + P
Sbjct: 552 VPGDPGLRGQPGRKGLDGIPGTPGVKGLPGPKGELALSGEKGDQ-GPPGDPGSPGSPGPA 610
Query: 130 FPAS-------------GHQHSPGCPRAGG------------PLRGEPGPYGPESFP 161
PA G Q PG P G P+ G PGP GP P
Sbjct: 611 GPAGPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSVSTPVPGPPGPPGPPGHP 667
Score = 27.7 bits (60), Expect = 5.5
Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 127 EPKFPASGHQHSPGCPRAGGPLRGEPGPYGPESFP 161
E FP G SPG GP G PGP GP+ FP
Sbjct: 50 EKGFP--GPPGSPGQKGFTGP-EGLPGPQGPKGFP 81
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 40.4 bits (93), Expect = 8e-04
Identities = 26/65 (40%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 100 PRGPTQPPARRGNHLRPPQSPGA-SRAQEPKFPASGHQHSPGCPRAGGPLRGEPGPYGPE 158
P GP PP G PP PG+ + +P P G PG P G P G PGP G +
Sbjct: 657 PPGPPGPPGHPGPQ-GPPGIPGSLGKCGDPGLP--GPDGEPGIPGIGFP--GPPGPKGDQ 711
Query: 159 SFPST 163
FP T
Sbjct: 712 GFPGT 716
Score = 30.4 bits (67), Expect = 0.85
Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 12/65 (18%)
Query: 100 PRGPTQPPARRGNHLRPPQSPGASRAQEPKFPASGHQHSPGCPRAGGPLRGEPGPYGPES 159
P GP PP RG+ PG + G PG P G ++GEPGP GP
Sbjct: 1335 PIGPKGPPGVRGD-------PGTLKI----ISLPGSPGPPGTPGEPG-MQGEPGPPGPPG 1382
Query: 160 FPSTC 164
C
Sbjct: 1383 NLGPC 1387
Score = 30.0 bits (66), Expect = 1.1
Identities = 44/177 (24%), Positives = 55/177 (31%), Gaps = 42/177 (23%)
Query: 19 GVSGSQGLQVWNSNPKCQLCGHQPRNTGL--WPNRSSFQTDISKSAGNTGCATAAPAHGG 76
G+ G QG +P P NTGL +P Q D G G G
Sbjct: 499 GIPGRQGAAGLKGSPG------SPGNTGLPGFPGFPGAQGDPGLK-GEKGETLQPEGQVG 551
Query: 77 WQWAPLAQGQLSHR-------PSGTDRKVAPRGPTQPPARRGNHLRPPQSPGASRAQEPK 129
P +GQ + G P+G +G+ PP PG+ + P
Sbjct: 552 VPGDPGLRGQPGRKGLDGIPGTPGVKGLPGPKGELALSGEKGDQ-GPPGDPGSPGSPGPA 610
Query: 130 FPAS-------------GHQHSPGCPRAGG------------PLRGEPGPYGPESFP 161
PA G Q PG P G P+ G PGP GP P
Sbjct: 611 GPAGPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSVSTPVPGPPGPPGPPGHP 667
Score = 27.7 bits (60), Expect = 5.5
Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 127 EPKFPASGHQHSPGCPRAGGPLRGEPGPYGPESFP 161
E FP G SPG GP G PGP GP+ FP
Sbjct: 50 EKGFP--GPPGSPGQKGFTGP-EGLPGPQGPKGFP 81
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 40.4 bits (93), Expect = 8e-04
Identities = 39/132 (29%), Positives = 44/132 (33%), Gaps = 33/132 (25%)
Query: 69 TAAPAHGGWQWAPLAQGQLSHRPSGTDRKVAPRGPTQPPARRGNHLRPPQSPGASRAQEP 128
T+AP Q AP QGQ G + GP PPA R PP SP R P
Sbjct: 512 TSAPQQPASQAAPPTQGQ------GRQSRPVAGGPGAPPAAR-----PPASPSPQRQAGP 560
Query: 129 K-----------FPASGHQHSPGCPRAGGPLRGEPGPYG-----------PESFPSTCHT 166
P PG + GP + PGP G P + P T
Sbjct: 561 PQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPGPAGPTRQASQAGPVPRTGPPTTQQ 620
Query: 167 ARKLRASPARRP 178
R PA RP
Sbjct: 621 PRPSGPGPAGRP 632
Score = 28.1 bits (61), Expect = 4.2
Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 102 GPTQPPARRGNHLRPPQSPGASRAQEPKFPASGH-QHSPGCPRAGGPLRGEPGPYGPE 158
G T P + Q P AQ+ P G Q PG R G PL+ P P G +
Sbjct: 434 GQTPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQGPPLQQRPPPQGQQ 491
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 40.4 bits (93), Expect = 8e-04
Identities = 39/132 (29%), Positives = 44/132 (33%), Gaps = 33/132 (25%)
Query: 69 TAAPAHGGWQWAPLAQGQLSHRPSGTDRKVAPRGPTQPPARRGNHLRPPQSPGASRAQEP 128
T+AP Q AP QGQ G + GP PPA R PP SP R P
Sbjct: 512 TSAPQQPASQAAPPTQGQ------GRQSRPVAGGPGAPPAAR-----PPASPSPQRQAGP 560
Query: 129 K-----------FPASGHQHSPGCPRAGGPLRGEPGPYG-----------PESFPSTCHT 166
P PG + GP + PGP G P + P T
Sbjct: 561 PQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPGPAGPTRQASQAGPVPRTGPPTTQQ 620
Query: 167 ARKLRASPARRP 178
R PA RP
Sbjct: 621 PRPSGPGPAGRP 632
Score = 28.1 bits (61), Expect = 4.2
Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 102 GPTQPPARRGNHLRPPQSPGASRAQEPKFPASGH-QHSPGCPRAGGPLRGEPGPYGPE 158
G T P + Q P AQ+ P G Q PG R G PL+ P P G +
Sbjct: 434 GQTPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQGPPLQQRPPPQGQQ 491
>gi|169183882 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 39.7 bits (91), Expect = 0.001
Identities = 45/167 (26%), Positives = 60/167 (35%), Gaps = 31/167 (18%)
Query: 5 GITPPLEAQQPWRGGVSGSQGLQVWNSNPKCQLCGHQPRNTGLWPNRSSFQTDISKSAGN 64
G PP+ Q WR G +G VW++ P PR G + + + G
Sbjct: 100 GAGPPMRGQCVWRAGPP-MRGQIVWSAGP--------PRVQGTLVHCPTRHLSQRRGPGR 150
Query: 65 TGCATAAPAHGGWQWAPLAQGQLSHR---PSGTDRKVAPR-GPTQPPAR----------- 109
C + P P Q HR P+ + PR GP+QP +
Sbjct: 151 Q-CGNSLPEPSSMLTCP----QQPHRATSPAAPGLQECPRTGPSQPSMQLPSYPEEGSGL 205
Query: 110 -RGNHLRPPQSPGASRAQEPKFPASGHQHSPGCPRAGGPL-RGEPGP 154
RG+ P PG R Q + A QH C GGP+ GE P
Sbjct: 206 SRGHKDARPGPPGQEREQVLRACAPQPQHQVDCSTVGGPMAAGEKPP 252
>gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo
sapiens]
Length = 921
Score = 39.7 bits (91), Expect = 0.001
Identities = 27/76 (35%), Positives = 33/76 (43%), Gaps = 11/76 (14%)
Query: 93 GTDRKVAPRGPTQPPARRGNHLRP-----PQSPGASRAQEP-----KFPASGHQHSPGCP 142
G D P+GP PP G +P P +PGA P + G + PG P
Sbjct: 290 GIDGDRGPKGPPGPPGPAGEPGKPGAPGKPGTPGADGLTGPDGSPGSIGSKGQKGEPGVP 349
Query: 143 RAGG-PLRGEPGPYGP 157
+ G P RG PGP GP
Sbjct: 350 GSRGFPGRGIPGPPGP 365
Score = 34.7 bits (78), Expect = 0.045
Identities = 37/109 (33%), Positives = 41/109 (37%), Gaps = 27/109 (24%)
Query: 62 AGNTGCATAAPAHGGWQWAPLAQGQLSHRPSGTDRKVAPRGPTQPPARRGNHLRPPQSPG 121
AG G +T AP G GQ G +V PRGP P RG L P SPG
Sbjct: 585 AGEKG-STGAPGKPGQMGNSGKPGQ-----QGPPGEVGPRGPQGLPGSRG-ELGPVGSPG 637
Query: 122 ASRAQEPKFPAS-GHQHSPGCPRAGGP-----------LRGEPGPYGPE 158
P G SPG P GP + GEPGP G +
Sbjct: 638 --------LPGKLGSLGSPGLPGLPGPPGLPGMKGDRGVVGEPGPKGEQ 678
Score = 31.6 bits (70), Expect = 0.38
Identities = 26/79 (32%), Positives = 29/79 (36%), Gaps = 10/79 (12%)
Query: 93 GTDRKVAPRGPTQPPARRGNHLRPPQSPGASRAQEPKFPAS----GHQHSPGCPRAGGPL 148
G + +G PP R N L PGA PAS G G P G +
Sbjct: 832 GPKGDLGEKGERGPPGRGPNGL-----PGAIGLPGDPGPASYGRNGRDGERGPPGVAG-I 885
Query: 149 RGEPGPYGPESFPSTCHTA 167
G PGP GP P C A
Sbjct: 886 PGVPGPPGPPGLPGFCEPA 904
>gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo
sapiens]
Length = 678
Score = 39.7 bits (91), Expect = 0.001
Identities = 27/76 (35%), Positives = 33/76 (43%), Gaps = 11/76 (14%)
Query: 93 GTDRKVAPRGPTQPPARRGNHLRP-----PQSPGASRAQEP-----KFPASGHQHSPGCP 142
G D P+GP PP G +P P +PGA P + G + PG P
Sbjct: 47 GIDGDRGPKGPPGPPGPAGEPGKPGAPGKPGTPGADGLTGPDGSPGSIGSKGQKGEPGVP 106
Query: 143 RAGG-PLRGEPGPYGP 157
+ G P RG PGP GP
Sbjct: 107 GSRGFPGRGIPGPPGP 122
Score = 34.7 bits (78), Expect = 0.045
Identities = 37/109 (33%), Positives = 41/109 (37%), Gaps = 27/109 (24%)
Query: 62 AGNTGCATAAPAHGGWQWAPLAQGQLSHRPSGTDRKVAPRGPTQPPARRGNHLRPPQSPG 121
AG G +T AP G GQ G +V PRGP P RG L P SPG
Sbjct: 342 AGEKG-STGAPGKPGQMGNSGKPGQ-----QGPPGEVGPRGPQGLPGSRG-ELGPVGSPG 394
Query: 122 ASRAQEPKFPAS-GHQHSPGCPRAGGP-----------LRGEPGPYGPE 158
P G SPG P GP + GEPGP G +
Sbjct: 395 --------LPGKLGSLGSPGLPGLPGPPGLPGMKGDRGVVGEPGPKGEQ 435
Score = 31.6 bits (70), Expect = 0.38
Identities = 26/79 (32%), Positives = 29/79 (36%), Gaps = 10/79 (12%)
Query: 93 GTDRKVAPRGPTQPPARRGNHLRPPQSPGASRAQEPKFPAS----GHQHSPGCPRAGGPL 148
G + +G PP R N L PGA PAS G G P G +
Sbjct: 589 GPKGDLGEKGERGPPGRGPNGL-----PGAIGLPGDPGPASYGRNGRDGERGPPGVAG-I 642
Query: 149 RGEPGPYGPESFPSTCHTA 167
G PGP GP P C A
Sbjct: 643 PGVPGPPGPPGLPGFCEPA 661
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 39.7 bits (91), Expect = 0.001
Identities = 41/177 (23%), Positives = 58/177 (32%), Gaps = 12/177 (6%)
Query: 3 PGGITPPLEAQQPWRGGVSGSQGLQVWNSNPKCQLCGHQPRNTGLWPNRSSFQTDISKSA 62
P + P + P + L + +S+PK P+ P+ T A
Sbjct: 888 PSVVNLPFPKEGPATPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTP---PA 944
Query: 63 GNTGCATAAPAHGGWQWAPLAQGQLSHRPSGTDRKVAPRGPTQPPARRGNHLRPPQSPGA 122
PA +WAP P G +P+G PPA PP G
Sbjct: 945 ATPPSPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPA-----ATPPSPKGG 999
Query: 123 SRAQEPKFPASGHQHSPGCPRAGGPLRGEPGPYGPESFPSTCHTARKLRASPARRPL 179
PK + +P P+ G P P G + P+ T + SPA PL
Sbjct: 1000 PATPSPKGAPTPPAVTPPSPK--GSPAATPFPKGASTPPAA--TPPSPKGSPAATPL 1052
Score = 32.0 bits (71), Expect = 0.29
Identities = 35/128 (27%), Positives = 44/128 (34%), Gaps = 18/128 (14%)
Query: 42 PRNTGLWPNRSSFQTDISKSAGNTGCATAAPAHGG-----WQWAPLAQGQLSHRPSGTDR 96
P T P S T + K A T AT GG + AP P G
Sbjct: 1036 PAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPA 1095
Query: 97 KVAPRGPTQPPARRGNHLRPPQSPGASRAQEPKFPASGHQHSPGCPRAGGPL-RGEPGPY 155
+P+G PPA P SP A P H+ +P P A P +G
Sbjct: 1096 TPSPKGAPMPPA------ATPPSPKGGLATPP------HKGAPTTPAATPPSPKGGLATP 1143
Query: 156 GPESFPST 163
P+ P+T
Sbjct: 1144 PPKGAPTT 1151
Score = 28.9 bits (63), Expect = 2.5
Identities = 37/161 (22%), Positives = 51/161 (31%), Gaps = 34/161 (21%)
Query: 51 RSSFQTDISKSAGNTGCATAAPAHGGW-----QWAPLAQGQLSHRPSGTDRKVAPRGPTQ 105
+ T K A T AT GG + AP P G P+G
Sbjct: 1206 KGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPT 1265
Query: 106 PPARRGNHLR------------------PPQSPGASRAQEPKF----PAS---GHQHSPG 140
PPA L+ PP G PK PA+ + SPG
Sbjct: 1266 PPAATPPSLKGGLATPPHKGAPNPAVVTPPSPKGGPATSPPKGAPTPPAATPPSPKGSPG 1325
Query: 141 CPRAGG----PLRGEPGPYGPESFPSTCHTARKLRASPARR 177
P G P P P G + P+T +++ +P+ +
Sbjct: 1326 TPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSSK 1366
Score = 27.3 bits (59), Expect = 7.2
Identities = 31/104 (29%), Positives = 39/104 (37%), Gaps = 14/104 (13%)
Query: 57 DISKSAGNTG-CATAAPAHGGWQWAPL--AQGQLSHRPSGTDRKVAPRGPTQPPARRGNH 113
D S G+ G +T APA PL Q S G D +P+GP PP + +
Sbjct: 1719 DPSAKNGSKGPLSTVAPA-------PLLPVQKDSSKTAKGKDASHSPKGPLAPPESKAS- 1770
Query: 114 LRPPQSPGASRAQEPKFPASGHQHSPGCPRAGGPLRGEPGPYGP 157
P + A PK P S + P PL P P P
Sbjct: 1771 --TPLTAAAFEKVLPK-PESASVSAAPSPPVSLPLAPSPVPTLP 1811
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 39.3 bits (90), Expect = 0.002
Identities = 36/117 (30%), Positives = 42/117 (35%), Gaps = 19/117 (16%)
Query: 56 TDISKSAGNTGCATAAPAHGGWQWAPLAQGQLSHRPSGTDRKVAPRG------------P 103
T S G GC G Q PL + RP G R AP G P
Sbjct: 4248 TQTSPLQGLLGCQPQLGGFPGPQTGPLQELGAGPRPQGPPRLPAPPGALSTGPVLGPVHP 4307
Query: 104 TQPPARRGNHLRPPQ--SPGASRAQEPKFPASGHQHSPGCPRAGGP-LRGEPGPYGP 157
T PP+ RP Q SP + E + P + PG P+ GP L PG P
Sbjct: 4308 TPPPSSPQEPKRPSQLPSPSSQLPTEAQLPPT----HPGTPKPQGPTLEPPPGRVSP 4360
>gi|18641360 collectin sub-family member 12 [Homo sapiens]
Length = 742
Score = 39.3 bits (90), Expect = 0.002
Identities = 26/71 (36%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
Query: 91 PSGTDRKVAPRGPTQPPARRGNH-LRPPQSPGASRAQEPKFPASGHQHSPGCPRAGGPLR 149
P G + P GP PP RG + Q P SR K G PG P G
Sbjct: 477 PPGPAGERGPIGPAGPPGERGGKGSKGSQGPKGSRGSPGKPGPQGPSGDPGPPGPPGK-E 535
Query: 150 GEPGPYGPESF 160
G PGP GP F
Sbjct: 536 GLPGPQGPPGF 546
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 39.3 bits (90), Expect = 0.002
Identities = 36/133 (27%), Positives = 51/133 (38%), Gaps = 6/133 (4%)
Query: 48 WPNRSSFQTD-----ISKSAGNTGCATAAPAHGGWQWAPLAQGQLSHRPSGTDRKVAPRG 102
+PNRS++ +S G T + AA A G + S S ++ G
Sbjct: 216 YPNRSAYPPPAPAYALSSPRGGTPGSGAAAAAGSKPPPSSSASASSSSSSFAQQRFGAMG 275
Query: 103 PTQPPARRGNHLRPPQSPGASRAQEPKFPASGHQHSPGCPRAGGPLRGEPGPYGPESFPS 162
P A G +P +P ++ A G+Q PG +GGP G G GP S
Sbjct: 276 GGGPSAAGGGTPQPTATPTLNQLLTSPSSARGYQGYPGGDYSGGPQDGGAGK-GPADMAS 334
Query: 163 TCHTARKLRASPA 175
C A A+ A
Sbjct: 335 QCWGAAAAAAAAA 347
Score = 28.5 bits (62), Expect = 3.2
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 8/64 (12%)
Query: 117 PQSPGASRAQEPKFPASGHQHSPGCPRAGGPLRGEPG--PYGPESFPSTCHTARKLRASP 174
P+ P + +P++G AGG + G+PG PYG T R AS
Sbjct: 810 PRQPNYNALPNANYPSAGMAGGINPMGAGGQMHGQPGIPPYG------TLPPGRMSHASM 863
Query: 175 ARRP 178
RP
Sbjct: 864 GNRP 867
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 39.3 bits (90), Expect = 0.002
Identities = 36/133 (27%), Positives = 51/133 (38%), Gaps = 6/133 (4%)
Query: 48 WPNRSSFQTD-----ISKSAGNTGCATAAPAHGGWQWAPLAQGQLSHRPSGTDRKVAPRG 102
+PNRS++ +S G T + AA A G + S S ++ G
Sbjct: 216 YPNRSAYPPPAPAYALSSPRGGTPGSGAAAAAGSKPPPSSSASASSSSSSFAQQRFGAMG 275
Query: 103 PTQPPARRGNHLRPPQSPGASRAQEPKFPASGHQHSPGCPRAGGPLRGEPGPYGPESFPS 162
P A G +P +P ++ A G+Q PG +GGP G G GP S
Sbjct: 276 GGGPSAAGGGTPQPTATPTLNQLLTSPSSARGYQGYPGGDYSGGPQDGGAGK-GPADMAS 334
Query: 163 TCHTARKLRASPA 175
C A A+ A
Sbjct: 335 QCWGAAAAAAAAA 347
Score = 28.5 bits (62), Expect = 3.2
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 8/64 (12%)
Query: 117 PQSPGASRAQEPKFPASGHQHSPGCPRAGGPLRGEPG--PYGPESFPSTCHTARKLRASP 174
P+ P + +P++G AGG + G+PG PYG T R AS
Sbjct: 810 PRQPNYNALPNANYPSAGMAGGINPMGAGGQMHGQPGIPPYG------TLPPGRMSHASM 863
Query: 175 ARRP 178
RP
Sbjct: 864 GNRP 867
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 38.9 bits (89), Expect = 0.002
Identities = 47/165 (28%), Positives = 57/165 (34%), Gaps = 26/165 (15%)
Query: 2 APGGITPPLEAQQPWRGGVSGSQGLQVWNSNPKCQLCGHQPRNTGLWPNRSSFQTDISKS 61
APG + P E P G G+QGLQ PR P TD K
Sbjct: 691 APGLVGPRGERGFPGERGSPGAQGLQ-------------GPRGLPGTPG-----TDGPKG 732
Query: 62 AGNTGCATAAPAHGGWQWAPLAQGQLS-HRPSGTDRKVAPRGPTQPPARRGNH-----LR 115
A A G Q P +G P G V +GP P + G +
Sbjct: 733 ASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIG 792
Query: 116 PPQSPGASRAQEPKFPASGHQHSPGCPRAGGPLRGEPGPYGPESF 160
PP P + ++ + G S G A G RGE GP GP F
Sbjct: 793 PP-GPAGANGEKGEVGPPGPAGSAGARGAPGE-RGETGPPGPAGF 835
Score = 37.7 bits (86), Expect = 0.005
Identities = 34/102 (33%), Positives = 39/102 (38%), Gaps = 9/102 (8%)
Query: 70 AAPAHGGW-QWAPLAQGQLSHRPSGTDRKVAPRGPTQPPARRGNHLRP--PQSPGASRAQ 126
AA GG+ + A AQ + P G P GP P +G P P PG S
Sbjct: 180 AAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPM 239
Query: 127 EPKFPAS-----GHQHSPGCPRAGGPLRGEPGPYGPESFPST 163
P+ P G G P G RG PGP G FP T
Sbjct: 240 GPRGPPGPPGKPGDDGEAGKPGKAGE-RGPPGPQGARGFPGT 280
Score = 35.0 bits (79), Expect = 0.034
Identities = 33/118 (27%), Positives = 40/118 (33%), Gaps = 32/118 (27%)
Query: 71 APAHGGWQWAPLAQGQLSHRPSGTDRKVAPRGPTQPPARRGNH----------LRPPQSP 120
AP G+Q P G+ G + PRGP PP + G+ R P P
Sbjct: 217 APGPQGFQGNPGEPGE-----PGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGP 271
Query: 121 GASRA--QEPKFPA-SGHQHSPGCPRAGGPL--------------RGEPGPYGPESFP 161
+R P P GH+ PG A G G PGP GP P
Sbjct: 272 QGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLP 329
Score = 34.7 bits (78), Expect = 0.045
Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 91 PSGTDRKVAPRGPTQPPARRGN-HLRPPQSPGASRAQEPKFPASGHQHSPGCPRAGGP-- 147
PSG D RG + PP R G L+ P P + + SG + PG G
Sbjct: 922 PSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRG 981
Query: 148 LRGEPGPYGPESFP 161
+ G PG G FP
Sbjct: 982 IVGLPGQRGERGFP 995
Score = 31.6 bits (70), Expect = 0.38
Identities = 48/178 (26%), Positives = 61/178 (34%), Gaps = 49/178 (27%)
Query: 1 MAPGGITPPLEAQQPWRGGVSGSQGLQVWNSNPKCQLCGHQPRNTGLWPNRSSFQTDISK 60
+ P G+T P A +P R G G+ G P +
Sbjct: 1022 VGPPGLTGP--AGEPGREGSPGADG-----------------------PPGRDGAAGVKG 1056
Query: 61 SAGNTGCATAAPAHGGWQWAPLAQGQLSHRPS-GTDRKVAPRGPTQPPARRGNHLRPPQS 119
G TG A AP G +P G + G P GP+ P RG ++ PQ
Sbjct: 1057 DRGETG-AVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARG--IQGPQG 1113
Query: 120 PGASRAQ--EP-KFPASGH------QHSPGCPR------AGGPL-----RGEPGPYGP 157
P + + EP + GH Q PG P A GP RG PGP GP
Sbjct: 1114 PRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGP 1171
Score = 30.4 bits (67), Expect = 0.85
Identities = 32/99 (32%), Positives = 38/99 (38%), Gaps = 7/99 (7%)
Query: 63 GNTGCATAAPAHG--GWQWAPLAQGQLSHRPSGTDRKVAPRGPTQPPARRGNHLRPPQSP 120
G TG A A G G P A G++ P G++ P GP P + G S
Sbjct: 879 GVTGPKGARGAQGPPGATGFPGAAGRVG--PPGSNGNPGPPGPPGPSGKDGPKGARGDSG 936
Query: 121 GASRAQEPKFPA-SGHQHSPGCPRAGGP--LRGEPGPYG 156
RA EP +G G P GP G PGP G
Sbjct: 937 PPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQG 975
Score = 29.3 bits (64), Expect = 1.9
Identities = 38/124 (30%), Positives = 47/124 (37%), Gaps = 36/124 (29%)
Query: 72 PAHG-GWQWAPLAQGQLSHRPS-GTDRKVAPRG----PTQP-PARRGNHLRPPQSPGASR 124
PA G G+ AP A+G+ + G + PRG P P PA + PGA
Sbjct: 361 PAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKG 420
Query: 125 -------AQEPKFPASGHQHSPGCPRAGGPL--------------------RGEPGPYGP 157
A P FP G + PG A GPL +GEPGP GP
Sbjct: 421 SAGAPGIAGAPGFP--GPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGP 478
Query: 158 ESFP 161
+ P
Sbjct: 479 QGAP 482
Score = 27.7 bits (60), Expect = 5.5
Identities = 23/67 (34%), Positives = 24/67 (35%), Gaps = 12/67 (17%)
Query: 91 PSGTDRKVAPRGPTQPPARRGNHLRPPQSPGASRAQEPKFPASGHQHSPGCPRAGGPLRG 150
P G RG P +RG P PG SG G P A G RG
Sbjct: 970 PPGPQGLAGQRGIVGLPGQRGER-GFPGLPG----------PSGEPGKQGAPGASGD-RG 1017
Query: 151 EPGPYGP 157
PGP GP
Sbjct: 1018 PPGPVGP 1024
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 38.9 bits (89), Expect = 0.002
Identities = 47/165 (28%), Positives = 57/165 (34%), Gaps = 26/165 (15%)
Query: 2 APGGITPPLEAQQPWRGGVSGSQGLQVWNSNPKCQLCGHQPRNTGLWPNRSSFQTDISKS 61
APG + P E P G G+QGLQ PR P TD K
Sbjct: 622 APGLVGPRGERGFPGERGSPGAQGLQ-------------GPRGLPGTPG-----TDGPKG 663
Query: 62 AGNTGCATAAPAHGGWQWAPLAQGQLS-HRPSGTDRKVAPRGPTQPPARRGNH-----LR 115
A A G Q P +G P G V +GP P + G +
Sbjct: 664 ASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIG 723
Query: 116 PPQSPGASRAQEPKFPASGHQHSPGCPRAGGPLRGEPGPYGPESF 160
PP P + ++ + G S G A G RGE GP GP F
Sbjct: 724 PP-GPAGANGEKGEVGPPGPAGSAGARGAPGE-RGETGPPGPAGF 766
Score = 37.7 bits (86), Expect = 0.005
Identities = 34/102 (33%), Positives = 39/102 (38%), Gaps = 9/102 (8%)
Query: 70 AAPAHGGW-QWAPLAQGQLSHRPSGTDRKVAPRGPTQPPARRGNHLRP--PQSPGASRAQ 126
AA GG+ + A AQ + P G P GP P +G P P PG S
Sbjct: 111 AAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPM 170
Query: 127 EPKFPAS-----GHQHSPGCPRAGGPLRGEPGPYGPESFPST 163
P+ P G G P G RG PGP G FP T
Sbjct: 171 GPRGPPGPPGKPGDDGEAGKPGKAGE-RGPPGPQGARGFPGT 211
Score = 35.0 bits (79), Expect = 0.034
Identities = 33/118 (27%), Positives = 40/118 (33%), Gaps = 32/118 (27%)
Query: 71 APAHGGWQWAPLAQGQLSHRPSGTDRKVAPRGPTQPPARRGNH----------LRPPQSP 120
AP G+Q P G+ G + PRGP PP + G+ R P P
Sbjct: 148 APGPQGFQGNPGEPGE-----PGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGP 202
Query: 121 GASRA--QEPKFPA-SGHQHSPGCPRAGGPL--------------RGEPGPYGPESFP 161
+R P P GH+ PG A G G PGP GP P
Sbjct: 203 QGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLP 260
Score = 34.7 bits (78), Expect = 0.045
Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 91 PSGTDRKVAPRGPTQPPARRGN-HLRPPQSPGASRAQEPKFPASGHQHSPGCPRAGGP-- 147
PSG D RG + PP R G L+ P P + + SG + PG G
Sbjct: 853 PSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRG 912
Query: 148 LRGEPGPYGPESFP 161
+ G PG G FP
Sbjct: 913 IVGLPGQRGERGFP 926
Score = 31.6 bits (70), Expect = 0.38
Identities = 48/178 (26%), Positives = 61/178 (34%), Gaps = 49/178 (27%)
Query: 1 MAPGGITPPLEAQQPWRGGVSGSQGLQVWNSNPKCQLCGHQPRNTGLWPNRSSFQTDISK 60
+ P G+T P A +P R G G+ G P +
Sbjct: 953 VGPPGLTGP--AGEPGREGSPGADG-----------------------PPGRDGAAGVKG 987
Query: 61 SAGNTGCATAAPAHGGWQWAPLAQGQLSHRPS-GTDRKVAPRGPTQPPARRGNHLRPPQS 119
G TG A AP G +P G + G P GP+ P RG ++ PQ
Sbjct: 988 DRGETG-AVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARG--IQGPQG 1044
Query: 120 PGASRAQ--EP-KFPASGH------QHSPGCPR------AGGPL-----RGEPGPYGP 157
P + + EP + GH Q PG P A GP RG PGP GP
Sbjct: 1045 PRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGP 1102
Score = 30.4 bits (67), Expect = 0.85
Identities = 32/99 (32%), Positives = 38/99 (38%), Gaps = 7/99 (7%)
Query: 63 GNTGCATAAPAHG--GWQWAPLAQGQLSHRPSGTDRKVAPRGPTQPPARRGNHLRPPQSP 120
G TG A A G G P A G++ P G++ P GP P + G S
Sbjct: 810 GVTGPKGARGAQGPPGATGFPGAAGRVG--PPGSNGNPGPPGPPGPSGKDGPKGARGDSG 867
Query: 121 GASRAQEPKFPA-SGHQHSPGCPRAGGP--LRGEPGPYG 156
RA EP +G G P GP G PGP G
Sbjct: 868 PPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQG 906
Score = 29.3 bits (64), Expect = 1.9
Identities = 38/124 (30%), Positives = 47/124 (37%), Gaps = 36/124 (29%)
Query: 72 PAHG-GWQWAPLAQGQLSHRPS-GTDRKVAPRG----PTQP-PARRGNHLRPPQSPGASR 124
PA G G+ AP A+G+ + G + PRG P P PA + PGA
Sbjct: 292 PAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKG 351
Query: 125 -------AQEPKFPASGHQHSPGCPRAGGPL--------------------RGEPGPYGP 157
A P FP G + PG A GPL +GEPGP GP
Sbjct: 352 SAGAPGIAGAPGFP--GPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGP 409
Query: 158 ESFP 161
+ P
Sbjct: 410 QGAP 413
Score = 27.7 bits (60), Expect = 5.5
Identities = 23/67 (34%), Positives = 24/67 (35%), Gaps = 12/67 (17%)
Query: 91 PSGTDRKVAPRGPTQPPARRGNHLRPPQSPGASRAQEPKFPASGHQHSPGCPRAGGPLRG 150
P G RG P +RG P PG SG G P A G RG
Sbjct: 901 PPGPQGLAGQRGIVGLPGQRGER-GFPGLPG----------PSGEPGKQGAPGASGD-RG 948
Query: 151 EPGPYGP 157
PGP GP
Sbjct: 949 PPGPVGP 955
>gi|169179759 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 38.9 bits (89), Expect = 0.002
Identities = 45/171 (26%), Positives = 60/171 (35%), Gaps = 27/171 (15%)
Query: 5 GITPPLEAQQPWRGGVSGSQGLQVWNSNPKCQ----LCGHQPRNTGLWPNRSSFQTDISK 60
G PP+ Q W G S +G VW + P + PR G + + +
Sbjct: 88 GAGPPMRGQWGWGAG-SPMRGQSVWGAGPPMRGQIVWSAGPPRVQGTLVHCPTRHLSQRR 146
Query: 61 SAGNTGCATAAPAHGGWQWAPLAQGQLSHR---PSGTDRKVAPR-GPTQPPAR------- 109
G C + P P Q HR P+ + PR GP+QP +
Sbjct: 147 GPGRQ-CGNSLPEPSSMLTCP----QQPHRATSPAAPGLQECPRTGPSQPSMQLPSYPEE 201
Query: 110 -----RGNHLRPPQSPGASRAQEPKFPASGHQHSPGCPRAGGPL-RGEPGP 154
RG+ P PG R Q + A QH C GGP+ GE P
Sbjct: 202 GSGLSRGHKDARPGPPGQEREQVLRACAPQPQHQVDCSAVGGPMAAGEKPP 252
>gi|4758416 golgi-specific brefeldin A resistant guanine nucleotide
exchange factor 1 [Homo sapiens]
Length = 1859
Score = 38.9 bits (89), Expect = 0.002
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Query: 81 PLAQGQLSHRPSGTDRKVAPRGPTQPPARRGNHLRPPQSP---GASRAQEPKFPASGHQH 137
P+ +P + + G T+ P H PP+ P GA ++P+ P +
Sbjct: 1725 PMPMEPQGQKPLASAHLTSAAGDTRTPG----HPPPPEIPSELGACDFEKPESPRAASSS 1780
Query: 138 SPGCPRAGGPLRGEPGPYGP 157
SPG P A P R P P GP
Sbjct: 1781 SPGSPVASSPSRLSPTPDGP 1800
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 38.5 bits (88), Expect = 0.003
Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 91 PSGTDRKVAPRGPTQPPARRGNHLRPPQSPGASRAQEPKFPASGHQHSPGCPRAGGPLRG 150
PSG K P GP P R+G + + K G Q +PG P G LRG
Sbjct: 1385 PSGPPGKRGPPGPAGPEGRQGE--KGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDG-LRG 1441
Query: 151 EPGPYGPESFPST 163
PGP G + P +
Sbjct: 1442 IPGPVGEQGLPGS 1454
Score = 35.0 bits (79), Expect = 0.034
Identities = 33/99 (33%), Positives = 37/99 (37%), Gaps = 18/99 (18%)
Query: 63 GNTGCATAAPAHGGWQWAPLAQGQLSHRPSGTDRKVAPRGPTQPPARRGNHLRPPQSPGA 122
GN G P G Q P AQG P+G PP +G L P PG
Sbjct: 709 GNVG-PQGEPGPPGQQGNPGAQGL-----------PGPQGAIGPPGEKGP-LGKPGLPGM 755
Query: 123 SRAQEPKFPASGHQHSPGCPRAGGPLRGEPGPYGPESFP 161
A P GH G P G +G PGP GP +P
Sbjct: 756 PGADGPP----GHPGKEGPPGEKGG-QGPPGPQGPIGYP 789
Score = 31.6 bits (70), Expect = 0.38
Identities = 32/87 (36%), Positives = 37/87 (42%), Gaps = 13/87 (14%)
Query: 76 GWQWAPLAQGQLSHRPSGTDRKVAPRGPTQPPARRGNHLRPPQSPGASRAQEPKFPASGH 135
G+ P A G+ R GT K PRG P RG R P+ G + PK
Sbjct: 886 GFPGFPGANGEKGGR--GTPGKPGPRGQRGPTGPRGE--RGPR--GITGKPGPK------ 933
Query: 136 QHSPGCPRAGGP-LRGEPGPYGPESFP 161
+S G AG P RG GP GP FP
Sbjct: 934 GNSGGDGPAGPPGERGPNGPQGPTGFP 960
Score = 30.8 bits (68), Expect = 0.65
Identities = 25/78 (32%), Positives = 28/78 (35%), Gaps = 19/78 (24%)
Query: 91 PSGTDRKVAPRGPTQPPARRGNHLRPPQSPGASRAQEPKFPASGHQHSPGCPRAGGPL-- 148
P G P+GP PP + G P PG Q + G PG P GP
Sbjct: 953 PQGPTGFPGPKGPPGPPGKDG----LPGHPG----QRGETGFQGKTGPPGPPGVVGPQGP 1004
Query: 149 ---------RGEPGPYGP 157
RG PGP GP
Sbjct: 1005 TGETGPMGERGHPGPPGP 1022
Score = 30.8 bits (68), Expect = 0.65
Identities = 30/92 (32%), Positives = 33/92 (35%), Gaps = 15/92 (16%)
Query: 86 QLSHRPSGTDRKVAPRGPTQPPARRGNHLRPPQSPGASRAQEPKFPASGHQHSPGCPRAG 145
Q S P G P GP PP PP PG P P G + S G P
Sbjct: 1509 QGSSGPKGEQGITGPSGPIGPPG-------PPGLPG------PPGP-KGAKGSSG-PTGP 1553
Query: 146 GPLRGEPGPYGPESFPSTCHTARKLRASPARR 177
G PGP GP P ++AS RR
Sbjct: 1554 KGEAGHPGPPGPPGPPGEVIQPLPIQASRTRR 1585
Score = 30.4 bits (67), Expect = 0.85
Identities = 43/146 (29%), Positives = 48/146 (32%), Gaps = 19/146 (13%)
Query: 18 GGVSGSQGLQVWNSNPKCQLCGHQPRNTGLWPNRSSFQTDISKSAGNTGCATAAPAHGGW 77
GG +GS+G V + Q Q R P T G G P GG
Sbjct: 529 GGDAGSKGPMVSAQESQAQAILQQARLALRGPAGPMGLT------GRPG-PVGPPGSGGL 581
Query: 78 QWAPLAQGQLSHRPSGTDRKVAPRGPTQPPARRGNHLRPPQSPGASRAQEPKFPAS--GH 135
+ P G P G P GP P RRG S GA P G
Sbjct: 582 KGEPGDVG-----PQGPRGVQGPPGPAGKPGRRGR----AGSDGARGMPGQTGPKGDRGF 632
Query: 136 QHSPGCPRAGGPLRGEPGPYGPESFP 161
G P G RG+PGP GP P
Sbjct: 633 DGLAGLPGEKGH-RGDPGPSGPPGPP 657
Score = 29.6 bits (65), Expect = 1.4
Identities = 23/73 (31%), Positives = 24/73 (32%), Gaps = 6/73 (8%)
Query: 91 PSGTDRKVAPRGPTQPPARRGNHLRPPQSPGASRAQEPKFPASGHQHSPGCPRA----GG 146
P G GP PP GN + A EP P G P R G
Sbjct: 1256 PRGPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGESG 1315
Query: 147 P--LRGEPGPYGP 157
P G PGP GP
Sbjct: 1316 PSGAAGPPGPKGP 1328
Score = 29.6 bits (65), Expect = 1.4
Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 12/66 (18%)
Query: 93 GTDRKVAPRGPTQPPARRGNHLRPPQSPGASRAQEPKFPASGHQHSPGCPRAGGPLRGEP 152
G + P G PP +G+ P Q+ EP G PG RG P
Sbjct: 1348 GPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEP-----GPSGPPG-------KRGPP 1395
Query: 153 GPYGPE 158
GP GPE
Sbjct: 1396 GPAGPE 1401
Score = 27.7 bits (60), Expect = 5.5
Identities = 26/78 (33%), Positives = 28/78 (35%), Gaps = 17/78 (21%)
Query: 100 PRGPTQPPAR---RGNHLRPPQ--SPGASRAQEPKFPA-----------SGHQHSPGCPR 143
P GP PP +G P Q S G Q P P SG PG PR
Sbjct: 1145 PAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGADGEPG-PR 1203
Query: 144 AGGPLRGEPGPYGPESFP 161
L G+ G GP FP
Sbjct: 1204 GQQGLFGQKGDEGPRGFP 1221
Score = 26.9 bits (58), Expect = 9.4
Identities = 21/65 (32%), Positives = 24/65 (36%), Gaps = 9/65 (13%)
Query: 102 GPTQPPARRGNHLRP-PQSPGASRAQEPKFPASGHQHSPGCPRAGGP--------LRGEP 152
GP +GN P P P S + A+G PG P GP GE
Sbjct: 1066 GPVGALGLKGNEGPPGPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGEK 1125
Query: 153 GPYGP 157
GP GP
Sbjct: 1126 GPQGP 1130
>gi|169180158 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 38.5 bits (88), Expect = 0.003
Identities = 45/171 (26%), Positives = 60/171 (35%), Gaps = 27/171 (15%)
Query: 5 GITPPLEAQQPWRGGVSGSQGLQVWNSNPKCQ----LCGHQPRNTGLWPNRSSFQTDISK 60
G PP+ Q W G S +G VW + P + PR G + + +
Sbjct: 88 GAGPPMRGQWGWGAG-SPMRGQSVWGAGPPMRGQIVWSAGPPRVQGTLVHCPTRHLSQRR 146
Query: 61 SAGNTGCATAAPAHGGWQWAPLAQGQLSHR---PSGTDRKVAPR-GPTQPPAR------- 109
G C + P P Q HR P+ + PR GP+QP +
Sbjct: 147 GPGRQ-CGNSLPEPSSMLTCP----QQPHRATSPAAPGLQECPRTGPSQPSMQLPSYPEE 201
Query: 110 -----RGNHLRPPQSPGASRAQEPKFPASGHQHSPGCPRAGGPL-RGEPGP 154
RG+ P PG R Q + A QH C GGP+ GE P
Sbjct: 202 GSGLSRGHKDARPGPPGQEREQVLRACAPQPQHQVDCSAVGGPVAAGEKPP 252
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 38.5 bits (88), Expect = 0.003
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 91 PSGTDRKVAPRGPTQPPARRGNHLRP-PQSPGASRAQEPKFPASGHQHSPGCPRAGGP-- 147
P G + P G + PP +G+ RP P P R ++ + G + PG P G
Sbjct: 1596 PIGLTGRAGPPGDSGPPGEKGDPGRPGPPGPVGPRGRDGEVGEKGDEGPPGDPGLPGKAG 1655
Query: 148 ---LRGEPGPYGP 157
LRG PG GP
Sbjct: 1656 ERGLRGAPGVRGP 1668
Score = 35.8 bits (81), Expect = 0.020
Identities = 36/104 (34%), Positives = 41/104 (39%), Gaps = 22/104 (21%)
Query: 62 AGNTGCATAAPAHGGWQWAPLAQGQLSHRPSGTDRKVAPRGPTQPPARRGNHL--RPPQS 119
AGN G P G + +P G P G + PRGP P G + P
Sbjct: 1313 AGNPG----TPGAPGLKGSPGLPG-----PRGDPGERGPRGPKGEPGAPGQVIGGEGPGL 1363
Query: 120 PGASRAQEPKFPASGHQHSPGCPRAGGPLRGEPGPYGPESFPST 163
PG P P PG PR GPL G+PGP GP P T
Sbjct: 1364 PGRKGDPGPSGP-------PG-PR--GPL-GDPGPRGPPGLPGT 1396
Score = 33.5 bits (75), Expect = 0.100
Identities = 24/70 (34%), Positives = 26/70 (37%), Gaps = 12/70 (17%)
Query: 100 PRGPTQPPARRGNH--LRPPQSPGASRAQEPKFPASGHQHS--PGCPRAGGP-------- 147
PRG P G P PG + P P GH PG P GP
Sbjct: 2145 PRGQDGNPGLPGERGMAGPEGKPGLQGPRGPPGPVGGHGDPGPPGAPGLAGPAGPQGPSG 2204
Query: 148 LRGEPGPYGP 157
L+GEPG GP
Sbjct: 2205 LKGEPGETGP 2214
Score = 32.7 bits (73), Expect = 0.17
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 13/59 (22%)
Query: 100 PRGPTQPPARRGNHLRPPQSPGASRAQEPKFPASGHQHSPGCPRAGGPLRGEPGPYGPE 158
P+GP PP ++G G S P P PG P GP RG PG GP+
Sbjct: 1434 PQGPVGPPGKKG-------EKGDSEDGAPGLPG-----QPGSPGEQGP-RGPPGAIGPK 1479
Score = 31.2 bits (69), Expect = 0.50
Identities = 24/69 (34%), Positives = 27/69 (39%), Gaps = 8/69 (11%)
Query: 91 PSGTDRKVAPRGPTQPPARRGNHLRPPQSPGASRAQEPKFPASGHQHSPGCPRAGGPL-- 148
PSG D P GP RG P G + P P +PG P A G
Sbjct: 2714 PSGNDGSAGPPGPPGSVGPRG----PEGLQGQKGERGP--PGERVVGAPGVPGAPGERGE 2767
Query: 149 RGEPGPYGP 157
+G PGP GP
Sbjct: 2768 QGRPGPAGP 2776
Score = 29.3 bits (64), Expect = 1.9
Identities = 27/94 (28%), Positives = 35/94 (37%), Gaps = 10/94 (10%)
Query: 76 GWQWAPLAQGQLSHRPS----GTDRKVAPRGPTQPPARRGNHLRPPQSPG-----ASRAQ 126
G + AP +G + + G D + G + P RG PP PG A+
Sbjct: 1658 GLRGAPGVRGPVGEKGDQGDPGEDGRNGSPGSSGPKGDRGEP-GPPGPPGRLVDTGPGAR 1716
Query: 127 EPKFPASGHQHSPGCPRAGGPLRGEPGPYGPESF 160
E P Q P P+ L G PG G E F
Sbjct: 1717 EKGEPGDRGQEGPRGPKGDPGLPGAPGERGIEGF 1750
Score = 28.9 bits (63), Expect = 2.5
Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 10/84 (11%)
Query: 83 AQGQLSHR-PSGTDRKVAPRGPTQPPARRGNHLRPPQS-----PGASRAQEPKFP--ASG 134
A+G + R P G D PRG P +G+ P PG P+ A+G
Sbjct: 2534 AKGDMGERGPRGLDGDKGPRGDNGDPGDKGSKGEPGDKGSAGLPGLRGLLGPQGQPGAAG 2593
Query: 135 HQHSPGCPRAGG--PLRGEPGPYG 156
PG P G +RGE G G
Sbjct: 2594 IPGDPGSPGKDGVPGIRGEKGDVG 2617
Score = 26.9 bits (58), Expect = 9.4
Identities = 23/73 (31%), Positives = 27/73 (36%), Gaps = 6/73 (8%)
Query: 93 GTDRKVAPRGPTQPPARRGNHLRPPQSPGASRAQEPKFPASGHQHSP----GCPRAGGPL 148
GT P GP G L Q P + + + P S P G P G
Sbjct: 2082 GTPGPPGPPGPKVSVDEPGPGLSGEQGPPGLKGAKGE-PGSNGDQGPKGDRGVPGIKGD- 2139
Query: 149 RGEPGPYGPESFP 161
RGEPGP G + P
Sbjct: 2140 RGEPGPRGQDGNP 2152
>gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2
preproprotein [Homo sapiens]
Length = 198
Score = 38.5 bits (88), Expect = 0.003
Identities = 30/111 (27%), Positives = 41/111 (36%), Gaps = 21/111 (18%)
Query: 55 QTDISKSAGNT-GCATAAPAHGGWQWAPLAQGQLSHRPSGTDRKVAPRGPTQ-------- 105
Q D S+S + G P GG P QG ++P G P+GP
Sbjct: 83 QGDKSRSPRSPPGKPQGPPPQGGKPQGPPPQG--GNKPQGPPPPGKPQGPPAQGGSKSQS 140
Query: 106 ----------PPARRGNHLRPPQSPGASRAQEPKFPASGHQHSPGCPRAGG 146
PP + GN+ + P P Q+P+ P +G P P GG
Sbjct: 141 ARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRPPQGG 191
Score = 35.0 bits (79), Expect = 0.034
Identities = 31/107 (28%), Positives = 44/107 (41%), Gaps = 9/107 (8%)
Query: 72 PAHGGWQWAPLAQGQLSHRPSGTDRKVAPRGPTQPPARRGNHLRPPQSPGASRAQEPKFP 131
P G P QG ++P G P+GP PP +G+ R P+SP P P
Sbjct: 51 PPPPGKPQGPPPQG--GNKPQGPPPPGKPQGP--PP--QGDKSRSPRSPPGKPQGPP--P 102
Query: 132 ASGHQHSPGCPRAGGPLRGEPGPYGPESFPSTCHTARKLRASPARRP 178
G P P+ G +G P P P+ P+ + + SP +P
Sbjct: 103 QGGKPQGPP-PQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPGKP 148
Score = 30.4 bits (67), Expect = 0.85
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 19/75 (25%)
Query: 72 PAHGGWQWAPLAQGQLSHRPSGTDRKVAPRGPTQ--------PPARRGNHLRPPQSPGAS 123
PA GG ++ Q + P G P+GP Q PP G + + PQ+P A
Sbjct: 131 PAQGG------SKSQSARSPPGK-----PQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAG 179
Query: 124 RAQEPKFPASGHQHS 138
+ Q P P G + S
Sbjct: 180 QPQGPPRPPQGGRPS 194
>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
Length = 1669
Score = 38.1 bits (87), Expect = 0.004
Identities = 34/112 (30%), Positives = 47/112 (41%), Gaps = 20/112 (17%)
Query: 59 SKSAGNTGCATAA----PAHG-----GWQWAPLAQGQLSHRPSGTDRKVAPRGPTQPPAR 109
S++A GCA + HG G + P QG + G P GP PP +
Sbjct: 23 SRAAAKGGCAGSGCGKCDCHGVKGQKGERGLPGLQGVI-----GFPGMQGPEGPQGPPGQ 77
Query: 110 RGNHLRPPQSPGASRAQEPKFPASGHQHSPGCPRAGGPLRGEPGPYGPESFP 161
+G+ P PG + P ASG+ +PG P + G+ GP GP P
Sbjct: 78 KGD-TGEPGLPGTKGTRGPP-GASGYPGNPGLP----GIPGQDGPPGPPGIP 123
Score = 30.4 bits (67), Expect = 0.85
Identities = 31/111 (27%), Positives = 37/111 (33%), Gaps = 23/111 (20%)
Query: 72 PAHGGWQWAPLAQGQLSHRPSGTDRKVAPRGPTQPPARRGNH----------------LR 115
P G P QG + P G P GP PP +G
Sbjct: 181 PGTPGPPGLPGLQGPVG--PPGFTGPPGPPGPPGPPGEKGQMGLSFQGPKGDKGDQGVSG 238
Query: 116 PPQSPGASRAQEP-KFPASGHQHSPGCP----RAGGPLRGEPGPYGPESFP 161
PP PG ++ QE F G + G P G +GEPG GP P
Sbjct: 239 PPGVPGQAQVQEKGDFATKGEKGQKGEPGFQGMPGVGEKGEPGKPGPRGKP 289
Score = 29.6 bits (65), Expect = 1.4
Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 2/88 (2%)
Query: 69 TAAPAHGGWQWAPLAQGQLSHRPSGTDRKVAPRGPTQPPARRGNHLRPPQSPGASRAQEP 128
T P G P +GQ+ G +G + PP G + A++ ++
Sbjct: 202 TGPPGPPGPPGPPGEKGQMGLSFQGPKGDKGDQGVSGPPGVPGQAQVQEKGDFATKGEKG 261
Query: 129 KFPASGHQHSPGCPRAGGPLRGEPGPYG 156
+ G Q PG G P G+PGP G
Sbjct: 262 QKGEPGFQGMPGVGEKGEP--GKPGPRG 287
Score = 28.9 bits (63), Expect = 2.5
Identities = 50/185 (27%), Positives = 61/185 (32%), Gaps = 31/185 (16%)
Query: 3 PGGITPPLEAQQPWRGGVSGSQGLQ-------VWNSNPKCQLCGHQPRNTGLWPNRSSFQ 55
PG PP E P + G G +GL V L G QP G P F
Sbjct: 479 PGPQGPPGEIGFPGQPGAKGDRGLPGRDGVAGVPGPQGTPGLIG-QPGAKG-EPGEFYFD 536
Query: 56 TDISKSAGNTGCATAAPAHGGWQWAPLAQGQLSH----RPSGTDRKVAPRGPTQPPARRG 111
+ G+ G P G + G+ H P G+ V +G PP G
Sbjct: 537 LRLKGDKGDPG----FPGQPGMTGRAGSPGRDGHPGLPGPKGSPGSVGLKGERGPPGGVG 592
Query: 112 -----NHLRPPQSPGASRAQE-PKFPASGHQHSPGCPRAGGPLRGE-------PGPYGPE 158
PP PG A +G PG P GP +GE PGP G E
Sbjct: 593 FPGSRGDTGPPGPPGYGPAGPIGDKGQAGFPGGPGSPGLPGP-KGEPGKIVPLPGPPGAE 651
Query: 159 SFPST 163
P +
Sbjct: 652 GLPGS 656
Score = 27.7 bits (60), Expect = 5.5
Identities = 20/57 (35%), Positives = 21/57 (36%), Gaps = 5/57 (8%)
Query: 105 QPPARRGNHLRPPQSPGASRAQEPKFPASGHQHSPGCPRAGGPLRGEPGPYGPESFP 161
Q P PP PG P G + G P GP RGEPGP G P
Sbjct: 316 QGPQGEKGEAGPPGPPGIVIGTGPL----GEKGERGYPGTPGP-RGEPGPKGFPGLP 367
Score = 27.7 bits (60), Expect = 5.5
Identities = 35/122 (28%), Positives = 42/122 (34%), Gaps = 14/122 (11%)
Query: 55 QTDISKSAGNTGCATAAPAHGGWQWAPLAQGQLSHR-PSGTDRKVAPRGPTQPPARRG-- 111
Q ++ AG+ G P G + +P + G R P G RG T PP G
Sbjct: 551 QPGMTGRAGSPG-RDGHPGLPGPKGSPGSVGLKGERGPPGGVGFPGSRGDTGPPGPPGYG 609
Query: 112 --------NHLRPPQSPGASRAQEPKFPASGHQHSPGCPRAGG--PLRGEPGPYGPESFP 161
P PG+ PK PG P A G G PGP G FP
Sbjct: 610 PAGPIGDKGQAGFPGGPGSPGLPGPKGEPGKIVPLPGPPGAEGLPGSPGFPGPQGDRGFP 669
Query: 162 ST 163
T
Sbjct: 670 GT 671
Score = 26.9 bits (58), Expect = 9.4
Identities = 22/60 (36%), Positives = 23/60 (38%), Gaps = 13/60 (21%)
Query: 102 GPTQPPARRGNHLRPPQSPGASRAQEPKFPASGHQHSPGCPRAGGPLRGEPGPYGPESFP 161
GP P + G P SPG A E G Q PG P G PGP GP P
Sbjct: 1213 GPPGPQGQPGL----PGSPG--HATEGPKGDRGPQGQPGLP-------GLPGPMGPPGLP 1259
>gi|148806908 fibronectin type III domain containing 1 [Homo sapiens]
Length = 1894
Score = 38.1 bits (87), Expect = 0.004
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 13/101 (12%)
Query: 42 PRNTGLWPNRSSFQTDISKSAGNTGCATAAPAHGGWQWAPLAQGQLSHRPSGTDRKVAPR 101
P++TG + + ++ A + +T A G +P AQ P TDR +P
Sbjct: 929 PKSTGADTHPQGKYSSLASKAQDVQQSTDADTEGH---SPKAQ------PGSTDRHASPA 979
Query: 102 GPTQPPARRGNHLRPPQ--SPGASRAQEPKFPASGHQHSPG 140
P P AR H P+ +PG + Q+P P + QH PG
Sbjct: 980 RP--PAARSQQHPSVPRRMTPGRAPQQQPPPPVATSQHHPG 1018
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.133 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,670,997
Number of Sequences: 37866
Number of extensions: 679647
Number of successful extensions: 4212
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 562
Number of HSP's that attempted gapping in prelim test: 3040
Number of HSP's gapped (non-prelim): 1540
length of query: 179
length of database: 18,247,518
effective HSP length: 96
effective length of query: 83
effective length of database: 14,612,382
effective search space: 1212827706
effective search space used: 1212827706
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.