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Search of human proteins with 239742202
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239742202 PREDICTED: hypothetical protein XP_002342450 [Homo
sapiens]
(272 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239742202 PREDICTED: hypothetical protein XP_002342450 [Homo ... 563 e-161
gi|239748304 PREDICTED: hypothetical protein XP_002346608 [Homo ... 532 e-151
gi|239753673 PREDICTED: hypothetical protein [Homo sapiens] 345 3e-95
gi|239755255 PREDICTED: hypothetical protein [Homo sapiens] 42 6e-04
gi|239749748 PREDICTED: hypothetical protein XP_002347156 [Homo ... 42 6e-04
gi|239744003 PREDICTED: hypothetical protein XP_002343004 [Homo ... 42 6e-04
gi|76056882 calcium binding protein 1 isoform 3 [Homo sapiens] 42 7e-04
gi|171184400 ATP-binding cassette, sub-family B, member 10 [Homo... 41 0.001
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 40 0.002
gi|239741603 PREDICTED: hypothetical protein XP_002342247 [Homo ... 39 0.004
gi|78042577 MAP7 domain containing 1 [Homo sapiens] 39 0.004
gi|182507165 thymus expressed gene 3-like [Homo sapiens] 39 0.005
gi|239756937 PREDICTED: hypothetical protein [Homo sapiens] 39 0.006
gi|239751449 PREDICTED: hypothetical protein XP_002347867 [Homo ... 39 0.006
gi|239745954 PREDICTED: hypothetical protein XP_002343623 [Homo ... 39 0.006
gi|239753883 PREDICTED: hypothetical protein [Homo sapiens] 38 0.008
gi|239748442 PREDICTED: hypothetical protein XP_002346660 [Homo ... 38 0.008
gi|239742378 PREDICTED: hypothetical protein XP_002342507 [Homo ... 38 0.008
gi|61097912 nucleolar protein with MIF4G domain 1 [Homo sapiens] 38 0.008
gi|110832843 TBP-associated factor 4 [Homo sapiens] 38 0.011
gi|239742514 PREDICTED: similar to Putative POM121-like protein ... 37 0.014
gi|239741968 PREDICTED: hypothetical protein [Homo sapiens] 37 0.014
gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens] 37 0.014
gi|209954781 neurotrophic factor artemin isoform 1 precursor [Ho... 37 0.014
gi|209954778 neurotrophic factor artemin isoform 3 precursor [Ho... 37 0.014
gi|209954776 neurotrophic factor artemin isoform 1 precursor [Ho... 37 0.014
gi|209977029 neurotrophic factor artemin isoform 3 precursor [Ho... 37 0.014
gi|7662234 rab11-family interacting protein 3 isoform 1 [Homo sa... 37 0.018
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 37 0.018
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 37 0.018
>gi|239742202 PREDICTED: hypothetical protein XP_002342450 [Homo
sapiens]
Length = 272
Score = 563 bits (1452), Expect = e-161
Identities = 272/272 (100%), Positives = 272/272 (100%)
Query: 1 MLWYSGQSLAFSGQGASLQSKPGIPPIPVRRGHCCSRVRVADGQHVDPAGAGRRWRGGLR 60
MLWYSGQSLAFSGQGASLQSKPGIPPIPVRRGHCCSRVRVADGQHVDPAGAGRRWRGGLR
Sbjct: 1 MLWYSGQSLAFSGQGASLQSKPGIPPIPVRRGHCCSRVRVADGQHVDPAGAGRRWRGGLR 60
Query: 61 GGFAPAAARPRSAPRRRILGPGGRGPQAEVPLVLSERHVPAGIPGARGRLAPARGGAARA 120
GGFAPAAARPRSAPRRRILGPGGRGPQAEVPLVLSERHVPAGIPGARGRLAPARGGAARA
Sbjct: 61 GGFAPAAARPRSAPRRRILGPGGRGPQAEVPLVLSERHVPAGIPGARGRLAPARGGAARA 120
Query: 121 RLLAVEVRVAVQSERHRHVGAVQLVPAPRQAAQAADTGPRHASPGARRPAPGARRSRPRL 180
RLLAVEVRVAVQSERHRHVGAVQLVPAPRQAAQAADTGPRHASPGARRPAPGARRSRPRL
Sbjct: 121 RLLAVEVRVAVQSERHRHVGAVQLVPAPRQAAQAADTGPRHASPGARRPAPGARRSRPRL 180
Query: 181 LRPASVWNEGDGSHGMFLGTPHFRCQWRRHSPRGPRARECMALKAVIAGPQRSQEEKVKH 240
LRPASVWNEGDGSHGMFLGTPHFRCQWRRHSPRGPRARECMALKAVIAGPQRSQEEKVKH
Sbjct: 181 LRPASVWNEGDGSHGMFLGTPHFRCQWRRHSPRGPRARECMALKAVIAGPQRSQEEKVKH 240
Query: 241 PRGQSGGSCGQQGFSGHSQVLASPGHAQRLQH 272
PRGQSGGSCGQQGFSGHSQVLASPGHAQRLQH
Sbjct: 241 PRGQSGGSCGQQGFSGHSQVLASPGHAQRLQH 272
>gi|239748304 PREDICTED: hypothetical protein XP_002346608 [Homo
sapiens]
Length = 285
Score = 532 bits (1371), Expect = e-151
Identities = 257/257 (100%), Positives = 257/257 (100%)
Query: 16 ASLQSKPGIPPIPVRRGHCCSRVRVADGQHVDPAGAGRRWRGGLRGGFAPAAARPRSAPR 75
ASLQSKPGIPPIPVRRGHCCSRVRVADGQHVDPAGAGRRWRGGLRGGFAPAAARPRSAPR
Sbjct: 29 ASLQSKPGIPPIPVRRGHCCSRVRVADGQHVDPAGAGRRWRGGLRGGFAPAAARPRSAPR 88
Query: 76 RRILGPGGRGPQAEVPLVLSERHVPAGIPGARGRLAPARGGAARARLLAVEVRVAVQSER 135
RRILGPGGRGPQAEVPLVLSERHVPAGIPGARGRLAPARGGAARARLLAVEVRVAVQSER
Sbjct: 89 RRILGPGGRGPQAEVPLVLSERHVPAGIPGARGRLAPARGGAARARLLAVEVRVAVQSER 148
Query: 136 HRHVGAVQLVPAPRQAAQAADTGPRHASPGARRPAPGARRSRPRLLRPASVWNEGDGSHG 195
HRHVGAVQLVPAPRQAAQAADTGPRHASPGARRPAPGARRSRPRLLRPASVWNEGDGSHG
Sbjct: 149 HRHVGAVQLVPAPRQAAQAADTGPRHASPGARRPAPGARRSRPRLLRPASVWNEGDGSHG 208
Query: 196 MFLGTPHFRCQWRRHSPRGPRARECMALKAVIAGPQRSQEEKVKHPRGQSGGSCGQQGFS 255
MFLGTPHFRCQWRRHSPRGPRARECMALKAVIAGPQRSQEEKVKHPRGQSGGSCGQQGFS
Sbjct: 209 MFLGTPHFRCQWRRHSPRGPRARECMALKAVIAGPQRSQEEKVKHPRGQSGGSCGQQGFS 268
Query: 256 GHSQVLASPGHAQRLQH 272
GHSQVLASPGHAQRLQH
Sbjct: 269 GHSQVLASPGHAQRLQH 285
>gi|239753673 PREDICTED: hypothetical protein [Homo sapiens]
Length = 380
Score = 345 bits (884), Expect = 3e-95
Identities = 170/170 (100%), Positives = 170/170 (100%)
Query: 16 ASLQSKPGIPPIPVRRGHCCSRVRVADGQHVDPAGAGRRWRGGLRGGFAPAAARPRSAPR 75
ASLQSKPGIPPIPVRRGHCCSRVRVADGQHVDPAGAGRRWRGGLRGGFAPAAARPRSAPR
Sbjct: 29 ASLQSKPGIPPIPVRRGHCCSRVRVADGQHVDPAGAGRRWRGGLRGGFAPAAARPRSAPR 88
Query: 76 RRILGPGGRGPQAEVPLVLSERHVPAGIPGARGRLAPARGGAARARLLAVEVRVAVQSER 135
RRILGPGGRGPQAEVPLVLSERHVPAGIPGARGRLAPARGGAARARLLAVEVRVAVQSER
Sbjct: 89 RRILGPGGRGPQAEVPLVLSERHVPAGIPGARGRLAPARGGAARARLLAVEVRVAVQSER 148
Query: 136 HRHVGAVQLVPAPRQAAQAADTGPRHASPGARRPAPGARRSRPRLLRPAS 185
HRHVGAVQLVPAPRQAAQAADTGPRHASPGARRPAPGARRSRPRLLRPAS
Sbjct: 149 HRHVGAVQLVPAPRQAAQAADTGPRHASPGARRPAPGARRSRPRLLRPAS 198
Score = 32.3 bits (72), Expect = 0.45
Identities = 36/96 (37%), Positives = 38/96 (39%), Gaps = 24/96 (25%)
Query: 48 PAGAGRRWRGGLRGGFAPAAARPRSAPRRRILGPGGRGPQAEVPLVLSERHVPAGIPG-A 106
PA RR R L PA+ PR APRRR P G G PG
Sbjct: 182 PAPGARRSRPRL---LRPASPPPRPAPRRRSTAPRHEG----------------GRPGRG 222
Query: 107 RGRLAPARGGAARARLLAVEVRVAVQSER-HRHVGA 141
R R P GA ARL E+ A ER HR GA
Sbjct: 223 RTRRQPHLAGAGCARL---ELEGARMGERLHRRQGA 255
>gi|239755255 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 42.0 bits (97), Expect = 6e-04
Identities = 59/171 (34%), Positives = 68/171 (39%), Gaps = 32/171 (18%)
Query: 79 LGPGGRGPQAEVPLVLSERHVPAGIPGARGRLAPARG-GAARARLLAVEVRVAVQSERHR 137
LG G G Q EV VL E H P A GR ARG AAR R VE ++R
Sbjct: 121 LGVDGVG-QREVHRVLQEPHPGHAAPQAHGR--GARGIHAARGR--GVEAAAGAGAQR-- 173
Query: 138 HVGAVQLVPAPRQAAQAADTGPR-HASPGARRPAPGARRSRPRLLRPA-SVWNEGDGSHG 195
AAQA G R H +P RPA GAR + PA G G HG
Sbjct: 174 -------------AAQAVGAGGRSHVAPAGARPARGARAAE----HPAVGGRGHGPGGHG 216
Query: 196 MFLGTPHFRCQWRRHSPRGPRARECMALKAVIAGPQRSQEEKVKHPRGQSG 246
R +WR +P G A E AV G + + PR +SG
Sbjct: 217 CGGWRWPGRRRWRGLAP-GEEANE----GAVGVGGGSAAASLARGPRSESG 262
>gi|239749748 PREDICTED: hypothetical protein XP_002347156 [Homo
sapiens]
Length = 446
Score = 42.0 bits (97), Expect = 6e-04
Identities = 59/171 (34%), Positives = 68/171 (39%), Gaps = 32/171 (18%)
Query: 79 LGPGGRGPQAEVPLVLSERHVPAGIPGARGRLAPARG-GAARARLLAVEVRVAVQSERHR 137
LG G G Q EV VL E H P A GR ARG AAR R VE ++R
Sbjct: 270 LGVDGVG-QREVHRVLQEPHPGHAAPQAHGR--GARGIHAARGR--GVEAAAGAGAQR-- 322
Query: 138 HVGAVQLVPAPRQAAQAADTGPR-HASPGARRPAPGARRSRPRLLRPA-SVWNEGDGSHG 195
AAQA G R H +P RPA GAR + PA G G HG
Sbjct: 323 -------------AAQAVGAGGRSHVAPAGARPARGARAAE----HPAVGGRGHGPGGHG 365
Query: 196 MFLGTPHFRCQWRRHSPRGPRARECMALKAVIAGPQRSQEEKVKHPRGQSG 246
R +WR +P G A E AV G + + PR +SG
Sbjct: 366 CGGWRWPGRRRWRGLAP-GEEANE----GAVGVGGGSAAASLARGPRSESG 411
>gi|239744003 PREDICTED: hypothetical protein XP_002343004 [Homo
sapiens]
Length = 446
Score = 42.0 bits (97), Expect = 6e-04
Identities = 59/171 (34%), Positives = 68/171 (39%), Gaps = 32/171 (18%)
Query: 79 LGPGGRGPQAEVPLVLSERHVPAGIPGARGRLAPARG-GAARARLLAVEVRVAVQSERHR 137
LG G G Q EV VL E H P A GR ARG AAR R VE ++R
Sbjct: 270 LGVDGVG-QREVHRVLQEPHPGHAAPQAHGR--GARGIHAARGR--GVEAAAGAGAQR-- 322
Query: 138 HVGAVQLVPAPRQAAQAADTGPR-HASPGARRPAPGARRSRPRLLRPA-SVWNEGDGSHG 195
AAQA G R H +P RPA GAR + PA G G HG
Sbjct: 323 -------------AAQAVGAGGRSHVAPAGARPARGARAAE----HPAVGGRGHGPGGHG 365
Query: 196 MFLGTPHFRCQWRRHSPRGPRARECMALKAVIAGPQRSQEEKVKHPRGQSG 246
R +WR +P G A E AV G + + PR +SG
Sbjct: 366 CGGWRWPGRRRWRGLAP-GEEANE----GAVGVGGGSAAASLARGPRSESG 411
>gi|76056882 calcium binding protein 1 isoform 3 [Homo sapiens]
Length = 370
Score = 41.6 bits (96), Expect = 7e-04
Identities = 57/192 (29%), Positives = 72/192 (37%), Gaps = 22/192 (11%)
Query: 61 GGFAPAAARPRSAPR-RRILGPGGRGPQAEVPLVLSERHVPAGIPGARGRLAPARGGAAR 119
GG A RP R +R+LG G R R +PAG P R R AP G A
Sbjct: 3 GGDGAAFKRPGDGARLQRVLGLGSRR---------EPRSLPAGGPAPR-RTAPPPPGHAS 52
Query: 120 ARLLAVEVRVAVQSERHRHVGAVQLVPAPRQAAQAADTGPRHASPGARRPAPGARRSRPR 179
A A+ +A + L+ A AA PRH AR P +RR
Sbjct: 53 AGPAAMSSHIAKSESK------TSLLKAAAAAASGGSRAPRHGP--ARDPGLPSRRLPGS 104
Query: 180 LLRPASVWNEGDGSHGMFLGTPHFRCQWRRHSPRGPRARECMALKAVIAGPQR-SQEEKV 238
PA+ + GD S L P R + R S R C +A+ A R S +
Sbjct: 105 C--PATPQSSGDPSSRRPLCRPAPREEGARGSQRVLPQAHCRPREALPAAASRPSPSSPL 162
Query: 239 KHPRGQSGGSCG 250
RG+ G G
Sbjct: 163 PPARGRDGEERG 174
>gi|171184400 ATP-binding cassette, sub-family B, member 10 [Homo
sapiens]
Length = 738
Score = 41.2 bits (95), Expect = 0.001
Identities = 36/99 (36%), Positives = 40/99 (40%), Gaps = 26/99 (26%)
Query: 50 GAGRRWRGGLRGGFAPAAAR---------------PRSAPRRRILGPGG-RGPQAEVPLV 93
GA RRWR G RGG P A+R P S GPG R P+A P
Sbjct: 63 GAARRWRSGCRGG-GPGASRGVLGLARLLGLWARGPGSCRCGAFAGPGAPRLPRARFPGG 121
Query: 94 LSE---------RHVPAGIPGARGRLAPARGGAARARLL 123
+ R PA PG +GRL PA G AR L
Sbjct: 122 PAAAAWAGDEAWRRGPAAPPGDKGRLRPAAAGLPEARKL 160
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 40.0 bits (92), Expect = 0.002
Identities = 59/212 (27%), Positives = 80/212 (37%), Gaps = 29/212 (13%)
Query: 52 GRRWRGGLRGGFAPAAARPR---SAPRRRILGPGGRGPQAEVPLVLSERHVPAGIPGARG 108
G R G GG +A P S+P R+ P E P P ++G
Sbjct: 316 GSGQRSGAHGGRPGSAHSPPDKPSSPSPRVRDKAAAAAPTP-PARGKESPSPRSAPSSQG 374
Query: 109 RLAPARGGAARARLLAVEVRVAVQS-ERHRHVGAVQLVPAP--------RQAAQAADTGP 159
R A GGA R R R + S R G + PAP +A ++D+G
Sbjct: 375 RGGRAAGGAGRRRRRRRRRRRSRSSASAPRRRGRRRPRPAPPRGSSRSLSRARSSSDSGS 434
Query: 160 RHASPGARRPAPGARR----------SRPRLLRPASVWNEGDGSHGMFLGTPHFRCQWRR 209
+PG P PG+ R RP RPAS + G+HG G P + R
Sbjct: 435 GRGAPGP-GPEPGSERGHGGHGKRAKERPPRARPAST-SPSPGAHGR-RGGPEGKSSSR- 490
Query: 210 HSPRGPRARECMALKAVIAGPQRSQEEKVKHP 241
SP GP R + ++ RS E++ P
Sbjct: 491 -SP-GPHPRSWSSSRSPSKSRSRSAEKRPHSP 520
>gi|239741603 PREDICTED: hypothetical protein XP_002342247 [Homo
sapiens]
Length = 351
Score = 39.3 bits (90), Expect = 0.004
Identities = 65/214 (30%), Positives = 83/214 (38%), Gaps = 48/214 (22%)
Query: 64 APA-AARPRSAPRRRILGPGGRGPQAEVPLVLSERHVPAGIPGARGRLAP-ARGGAARAR 121
APA AARP P RR P P V VL H P G+P LAP GG A
Sbjct: 166 APAPAARPSPDPGRRP-PPAAPAPVVHVGPVLPLLHDPVGVP-----LAPLGHGGVDWAE 219
Query: 122 LLAVEVRVAVQSERHRHVGAVQLVPAPRQA-AQAADTGPRHASPGARRPAPGARRSRPRL 180
R+ ++S+R R P+P A +Q +T ARRP P R RP L
Sbjct: 220 NKERPRRLRLRSQRFR-------PPSPGAARSQLPET--------ARRPRP---RPRPAL 261
Query: 181 LRPASVWNEGDGSHGMFLGTPHFRC------QWRRHSPRGPRARECM---ALKAVIAGPQ 231
R A G G RC +W R +P R + K + G
Sbjct: 262 PRRAREPQPGSGR----------RCRRDTAVRWPRQAPYSSRGHDLERPGRCKTGLWGHS 311
Query: 232 RSQEEKVK-HPRGQSGGSCGQQGFSGHSQVLASP 264
+++ P+ +S SC FS +Q LA P
Sbjct: 312 AHTSHRLRISPKSESAPSCRAAVFSA-TQSLALP 344
>gi|78042577 MAP7 domain containing 1 [Homo sapiens]
Length = 841
Score = 39.3 bits (90), Expect = 0.004
Identities = 63/263 (23%), Positives = 91/263 (34%), Gaps = 35/263 (13%)
Query: 13 GQGASLQSKPGIPPIPVRRGHCCS---RVRVADGQHVDPAGAG-------RRWRGGLRGG 62
G G +L KP P RG S RVR + P+ AG +R +
Sbjct: 485 GPGHTLPPKPPSP-----RGTTASPKGRVRRKEEAKESPSAAGPEDKSQSKRRASNEKES 539
Query: 63 FAPAAARPRSAPRRRILGPGGRGPQAEVP---LVLSERHVPAGIPGARGRLAPARGGAAR 119
APA+ P AP P P AE P VL+ PA +A
Sbjct: 540 AAPASPAPSPAPSPTPAPPQKEQPPAETPTDAAVLTSPPAPAPPVTPSKPMAGTTDREEA 599
Query: 120 ARLLAVEVRVA------------VQSERHRHVGAVQLVPAPRQAAQAADTGPRHASPGAR 167
RLLA + R A +Q+ER + + QL A+ R AR
Sbjct: 600 TRLLAEKRRQAREQREREEQERRLQAERDKRMREEQLAREAEARAEREAEARRREEQEAR 659
Query: 168 RPAPGARRSRPRLLR---PASVWNEGDGSHGMFLGTPHFRCQWRRHSPRGPRARECM--A 222
A + + RL + A + + HF+ Q + R R E M
Sbjct: 660 EKAQAEQEEQERLQKQKEEAEARSREEAERQRLEREKHFQQQEQERQERRKRLEEIMKRT 719
Query: 223 LKAVIAGPQRSQEEKVKHPRGQS 245
K+ ++ ++ Q+ K + G S
Sbjct: 720 RKSEVSETKQKQDSKEANANGSS 742
>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
Length = 629
Score = 38.9 bits (89), Expect = 0.005
Identities = 72/282 (25%), Positives = 97/282 (34%), Gaps = 34/282 (12%)
Query: 14 QGASLQSKPGIPPIP--VRRGHCCSRVRVADGQHVDPAGAGRRWRGGLRGGFAPAAARPR 71
Q + Q P P P R S RV G PA R W AP A P
Sbjct: 282 QNSVRQRPPDASPSPGSARPAREPSLERVG-GHPTSPAALSRAWASSWESEAAPEPAAPP 340
Query: 72 SAPRRRILGPGGRGPQAEVPLVLSERHVPAGIPGARGRLAP---ARGGAA-------RAR 121
+AP GR +A+ + + G+PG R P RG + R R
Sbjct: 341 AAPSPPDSPAEGRLVKAQ--YIPGAQAATRGLPGRAARRKPPPLTRGRSVEQSPPRERPR 398
Query: 122 LLAVEVRVAVQSERHRHVGAVQLVPAPRQAAQAADTGPRHASPGARRPAPGARRSRPRLL 181
R+A S R G+ + A R ++ + G A P P A R PR
Sbjct: 399 AAGRRGRMAEASGRR---GSPRARKASRSQSETSLLGRASAVPSGPPKYPTAEREEPRPP 455
Query: 182 RP-----ASVWNEGDGSHGMFLGTPHF-RCQWRRHSPRGPRAR-------ECMALKAVIA 228
RP ++ + GS + T RR PR P AR + ++
Sbjct: 456 RPRRGPAPTLAAQAAGSCRRWRSTAEIDAADGRRVRPRAPAARVPGPGPSPSAPQRRLLY 515
Query: 229 GPQRSQEEKVK---HPRGQSGGSCGQQGFSGHSQVLASPGHA 267
G S E P G+ G + G G G S+ AS G +
Sbjct: 516 GCAGSDSECSAGRLGPLGRRGPAGGVGGGYGESESSASEGES 557
Score = 28.5 bits (62), Expect = 6.5
Identities = 37/113 (32%), Positives = 46/113 (40%), Gaps = 15/113 (13%)
Query: 72 SAPRRRILGPGGRGPQAEVPLVLSERHVPAGIPGARGRLAPARGGAARARLLAVEVRVAV 131
SA RR GP + S R P G P +P GGA R ++ ++
Sbjct: 205 SAERRARAGPFLTPSPLHAVAMRSPR--PCGRPPTD---SPDAGGAGRP----LDGYISA 255
Query: 132 QSERHRHVGAVQLVPAPRQAAQAADTGPRHASPGARRPAPGARRSRPRLLRPA 184
R R GA Q PR + AD GPR + +RP P A S P RPA
Sbjct: 256 LLRRRRRRGAGQ----PRTSPGGADGGPRRQNSVRQRP-PDASPS-PGSARPA 302
>gi|239756937 PREDICTED: hypothetical protein [Homo sapiens]
Length = 294
Score = 38.5 bits (88), Expect = 0.006
Identities = 59/197 (29%), Positives = 71/197 (36%), Gaps = 29/197 (14%)
Query: 6 GQSLAFSGQGASLQSKPGIPPIPVRRGHCCSRVRVADGQHVDPAGAGRRWRGGLR----G 61
G LA G +P PP P R R R G H P GR R G R G
Sbjct: 48 GSPLAVGGAFRVSSPRP-FPPRPERPSR---RHRAGCGAH-GPGSRGRERRRGSRDPPAG 102
Query: 62 GFAPAAARPRSAPRRRILGPGGRGPQAEVPLVLSERHVPAGIPGARGR-------LAPAR 114
A A AR RSAP G GP A P PA +P +R R L P R
Sbjct: 103 PVARARARGRSAPGSAQPASGAAGP-AAAPEAAPPAWDPATLPPSRKRNSLGSSPLHPVR 161
Query: 115 GGAARAR-------LLAVEVRVAVQSERHRHVGAVQLVPAPRQAAQAADTGP----RHAS 163
G RA +L V A+ + G + ++ Q+A GP S
Sbjct: 162 LGRVRAHAGPAGPSILRVAPHPALPGAQVHWAGRHRWAARRGKSLQSAWWGPGGRRNSIS 221
Query: 164 PGARR-PAPGARRSRPR 179
PG PAP + + R
Sbjct: 222 PGRTTFPAPPTQEAASR 238
>gi|239751449 PREDICTED: hypothetical protein XP_002347867 [Homo
sapiens]
Length = 315
Score = 38.5 bits (88), Expect = 0.006
Identities = 59/197 (29%), Positives = 71/197 (36%), Gaps = 29/197 (14%)
Query: 6 GQSLAFSGQGASLQSKPGIPPIPVRRGHCCSRVRVADGQHVDPAGAGRRWRGGLR----G 61
G LA G +P PP P R R R G H P GR R G R G
Sbjct: 48 GSPLAVGGAFRVSSPRP-FPPRPERPSR---RHRAGCGAH-GPGSRGRERRRGSRDPPAG 102
Query: 62 GFAPAAARPRSAPRRRILGPGGRGPQAEVPLVLSERHVPAGIPGARGR-------LAPAR 114
A A AR RSAP G GP A P PA +P +R R L P R
Sbjct: 103 PVARARARGRSAPGSAQPASGAAGP-AAAPEAAPPAWDPATLPPSRKRNSLGSSPLHPVR 161
Query: 115 GGAARAR-------LLAVEVRVAVQSERHRHVGAVQLVPAPRQAAQAADTGP----RHAS 163
G RA +L V A+ + G + ++ Q+A GP S
Sbjct: 162 LGRVRAHAGPAGTSILRVAPHPALPGAQVHWAGRHRWAARRGKSLQSAWWGPGGRRNSIS 221
Query: 164 PGARR-PAPGARRSRPR 179
PG PAP + + R
Sbjct: 222 PGRTTFPAPPTQEAASR 238
>gi|239745954 PREDICTED: hypothetical protein XP_002343623 [Homo
sapiens]
Length = 315
Score = 38.5 bits (88), Expect = 0.006
Identities = 59/197 (29%), Positives = 71/197 (36%), Gaps = 29/197 (14%)
Query: 6 GQSLAFSGQGASLQSKPGIPPIPVRRGHCCSRVRVADGQHVDPAGAGRRWRGGLR----G 61
G LA G +P PP P R R R G H P GR R G R G
Sbjct: 48 GSPLAVGGAFRVSSPRP-FPPRPERPSR---RHRAGCGAH-GPGSRGRERRRGSRDPPAG 102
Query: 62 GFAPAAARPRSAPRRRILGPGGRGPQAEVPLVLSERHVPAGIPGARGR-------LAPAR 114
A A AR RSAP G GP A P PA +P +R R L P R
Sbjct: 103 PVARARARGRSAPGSAQPASGAAGP-AAAPEAAPPAWDPATLPPSRKRNSLGSSPLHPVR 161
Query: 115 GGAARAR-------LLAVEVRVAVQSERHRHVGAVQLVPAPRQAAQAADTGP----RHAS 163
G RA +L V A+ + G + ++ Q+A GP S
Sbjct: 162 LGRVRAHAGPAGTSILRVAPHPALPGAQVHWAGRHRWAARRGKSLQSAWWGPGGRRNSIS 221
Query: 164 PGARR-PAPGARRSRPR 179
PG PAP + + R
Sbjct: 222 PGRTTFPAPPTQEAASR 238
>gi|239753883 PREDICTED: hypothetical protein [Homo sapiens]
Length = 296
Score = 38.1 bits (87), Expect = 0.008
Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 103 IPGAR-----GRLAPARGGAARARLLAVEVRVAVQSERHRHV--GAVQLVPAPRQAAQAA 155
+PG R G L+P R G+AR +L+A A + R + V G ++ A+
Sbjct: 67 VPGVRRGRQAGDLSPPRPGSARTQLVATSAAQAAAAGRAQRVRRGLLRWRTTALGPARPR 126
Query: 156 DTGPRHASPGARR--PAPGARRSRP 178
PRH PG R PAPG R P
Sbjct: 127 LRRPRHRLPGGSRRLPAPGPRAPAP 151
>gi|239748442 PREDICTED: hypothetical protein XP_002346660 [Homo
sapiens]
Length = 296
Score = 38.1 bits (87), Expect = 0.008
Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 103 IPGAR-----GRLAPARGGAARARLLAVEVRVAVQSERHRHV--GAVQLVPAPRQAAQAA 155
+PG R G L+P R G+AR +L+A A + R + V G ++ A+
Sbjct: 67 VPGVRRGRQAGDLSPPRPGSARTQLVATSAAQAAAAGRAQRVRRGLLRWRTTALGPARPR 126
Query: 156 DTGPRHASPGARR--PAPGARRSRP 178
PRH PG R PAPG R P
Sbjct: 127 LRRPRHRLPGGSRRLPAPGPRAPAP 151
>gi|239742378 PREDICTED: hypothetical protein XP_002342507 [Homo
sapiens]
Length = 296
Score = 38.1 bits (87), Expect = 0.008
Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 103 IPGAR-----GRLAPARGGAARARLLAVEVRVAVQSERHRHV--GAVQLVPAPRQAAQAA 155
+PG R G L+P R G+AR +L+A A + R + V G ++ A+
Sbjct: 67 VPGVRRGRQAGDLSPPRPGSARTQLVATSAAQAAAAGRAQRVRRGLLRWRTTALGPARPR 126
Query: 156 DTGPRHASPGARR--PAPGARRSRP 178
PRH PG R PAPG R P
Sbjct: 127 LRRPRHRLPGGSRRLPAPGPRAPAP 151
>gi|61097912 nucleolar protein with MIF4G domain 1 [Homo sapiens]
Length = 860
Score = 38.1 bits (87), Expect = 0.008
Identities = 43/147 (29%), Positives = 56/147 (38%), Gaps = 15/147 (10%)
Query: 51 AGRRWRGGLRGGFAPAAARPRSAPRRRILGPGGRGPQAEVPLVL---------SERHVPA 101
AG GG +G R PRR GP G G +A L L SE P
Sbjct: 7 AGEAGPGGSQGRVVRMKRRGGRGPRR---GPAGGGEKALKRLKLAVEEFVHATSEGEAPG 63
Query: 102 GIPGARGRLAPARGGAARARLLAVEVRVAVQSERHRHVGAVQLVPA--PRQAAQAADTGP 159
G G ++ GG + L E R ++ R + + P R A+ A +G
Sbjct: 64 GCEGRGAPVSFRPGGRKSRKELRKEKRHLRKARRLQRTAGPEQGPGLGGRSGAEEA-SGH 122
Query: 160 RHASPGARRPAPGARRSRPRLLRPASV 186
R + RPAP S PR RP+ V
Sbjct: 123 RQDTEERARPAPSRDPSPPRKPRPSRV 149
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 37.7 bits (86), Expect = 0.011
Identities = 46/142 (32%), Positives = 50/142 (35%), Gaps = 11/142 (7%)
Query: 43 GQHV---DPAGAGRRWRGGLRGGFAPAAARPRSAPRRRILGPGGRGPQAEVPLVLSERHV 99
G HV PAGA G AA P A R R PGG GPQ P V
Sbjct: 59 GNHVVSGSPAGAAGAGPAAPAEGAPGAAPEPPPAGRAR---PGGGGPQRPGPPSPRRPLV 115
Query: 100 PAG-IPGARGRLAPARGGAARARLLAVEVRVAVQSERHRHVGAVQLVPAPRQAAQAADTG 158
PAG P A P G A + VA E A PA A G
Sbjct: 116 PAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPG 175
Query: 159 PRHA---SPGARRPA-PGARRS 176
P PG +PA PGA ++
Sbjct: 176 PGPGPGPGPGPGKPAGPGAAQT 197
Score = 29.3 bits (64), Expect = 3.8
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 126 EVRVAVQSERHRHVGAVQLVPAPRQAAQAADTGPRHASPGARRPAPGARRSRP 178
EVR A HV + +P AA A P +PGA P A R+RP
Sbjct: 49 EVRAAAAGALGNHV----VSGSPAGAAGAGPAAPAEGAPGAAPEPPPAGRARP 97
Score = 28.1 bits (61), Expect = 8.5
Identities = 31/117 (26%), Positives = 36/117 (30%), Gaps = 11/117 (9%)
Query: 63 FAPAAARPRSAPRRRILGPGGRGPQAEVPLVLSERHVPAGIPGARGRLAPARGGAARARL 122
F AAA P A P P A P P A LA G A
Sbjct: 243 FVGAAAPPAPAAPSPPAAPAPAAPAA----------APPPPPPAPATLARPPGHPAGPPT 292
Query: 123 LAVEVRVAVQSERHRHVGAVQLVPAPRQAAQAADTGPRHASPGARRPAPGARRSRPR 179
A V ++ GA PAP A +G A PAPG + P+
Sbjct: 293 AAPAVPPPAAAQNGGSAGAAP-APAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPK 348
>gi|239742514 PREDICTED: similar to Putative POM121-like protein
1-like [Homo sapiens]
Length = 896
Score = 37.4 bits (85), Expect = 0.014
Identities = 34/129 (26%), Positives = 48/129 (37%), Gaps = 10/129 (7%)
Query: 130 AVQSERHRHVGAVQLVPAPRQAAQAADTGPRHASPGARRPAPGARRSRPRLLRP--ASVW 187
A S ++PAP AA + D G R PG PA A P L P S+
Sbjct: 563 ATSSHSRDSAQVTSMIPAPFTAA-SRDAGMRRTRPGTSAPAAAAAAPPPSTLNPTSGSLL 621
Query: 188 NEGDGSHGMFLGTPHFRCQWRRHSPR------GPRARECMALKAVIAGPQRSQE-EKVKH 240
N D FL + + RR R R R C+ A + ++ +++K
Sbjct: 622 NAVDEGPSHFLASATAAARARRSQVRYNQRSQTSRTRSCLKRNASSSSHSSTEGLQELKR 681
Query: 241 PRGQSGGSC 249
RG + C
Sbjct: 682 RRGPASSHC 690
>gi|239741968 PREDICTED: hypothetical protein [Homo sapiens]
Length = 263
Score = 37.4 bits (85), Expect = 0.014
Identities = 49/168 (29%), Positives = 61/168 (36%), Gaps = 23/168 (13%)
Query: 25 PP--IPVRRG--HCCSRVRVADGQHVDPAG-----AGRRWRGGLRGGFAPAAARP----- 70
PP + VR+G +R +G P G R WR G +PA AR
Sbjct: 76 PPRSVCVRKGARKTVEALRPREGSPAAPIGDEEWVLRRIWRRTGAAGASPAGARSHPGRA 135
Query: 71 --RSAPRRRILGPGGRGPQAEVPLVLSERHVPAGIPGARGRLAPARGGAARARLLAVEVR 128
R A R G GP+ L R + +G AR PA AR LAV
Sbjct: 136 SRRGASDRARCARGLGGPRVAAASELVRRGLASGAARAR----PASPAPARLLPLAVGAS 191
Query: 129 VAVQSERHRHVGAVQLVPAPRQAAQAADTGPRHASPGARRPAPGARRS 176
A R A P+P + + P S ARRP G RR+
Sbjct: 192 AAAGDTRRTEARAE---PSPSRRRRRRCCAPLPGSLPARRPGCGGRRA 236
>gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens]
Length = 237
Score = 37.4 bits (85), Expect = 0.014
Identities = 43/143 (30%), Positives = 53/143 (37%), Gaps = 25/143 (17%)
Query: 48 PAGAGRRWRGGLRGGFAPAAARPRSAPRRRILGPGGRGPQAEVPLVLSERHVPAGIPGAR 107
P G RW G A RP P R P P L R AG PG+R
Sbjct: 83 PGGRTARWCSG-------RARRPPPQPSR----PAPPPPAPPSALPRGGRAARAGGPGSR 131
Query: 108 GRLAPARGGAARARLLAVEVRVAVQSERHRHV-------GAVQLVPAPRQAAQAADTGPR 160
R A ARG R++L V VR R + G+ + +P + A+ G
Sbjct: 132 ARAAGARGCRLRSQL--VPVRALGLGHRSDELVRFRFCSGSCRRARSPHDLSLASLLG-- 187
Query: 161 HASPGARRPAPGARRSRPRLLRP 183
GA RP PG+R RP
Sbjct: 188 ---AGALRPPPGSRPVSQPCCRP 207
>gi|209954781 neurotrophic factor artemin isoform 1 precursor [Homo
sapiens]
Length = 220
Score = 37.4 bits (85), Expect = 0.014
Identities = 43/143 (30%), Positives = 53/143 (37%), Gaps = 25/143 (17%)
Query: 48 PAGAGRRWRGGLRGGFAPAAARPRSAPRRRILGPGGRGPQAEVPLVLSERHVPAGIPGAR 107
P G RW G A RP P R P P L R AG PG+R
Sbjct: 66 PGGRTARWCSG-------RARRPPPQPSR----PAPPPPAPPSALPRGGRAARAGGPGSR 114
Query: 108 GRLAPARGGAARARLLAVEVRVAVQSERHRHV-------GAVQLVPAPRQAAQAADTGPR 160
R A ARG R++L V VR R + G+ + +P + A+ G
Sbjct: 115 ARAAGARGCRLRSQL--VPVRALGLGHRSDELVRFRFCSGSCRRARSPHDLSLASLLG-- 170
Query: 161 HASPGARRPAPGARRSRPRLLRP 183
GA RP PG+R RP
Sbjct: 171 ---AGALRPPPGSRPVSQPCCRP 190
>gi|209954778 neurotrophic factor artemin isoform 3 precursor [Homo
sapiens]
Length = 228
Score = 37.4 bits (85), Expect = 0.014
Identities = 43/143 (30%), Positives = 53/143 (37%), Gaps = 25/143 (17%)
Query: 48 PAGAGRRWRGGLRGGFAPAAARPRSAPRRRILGPGGRGPQAEVPLVLSERHVPAGIPGAR 107
P G RW G A RP P R P P L R AG PG+R
Sbjct: 74 PGGRTARWCSG-------RARRPPPQPSR----PAPPPPAPPSALPRGGRAARAGGPGSR 122
Query: 108 GRLAPARGGAARARLLAVEVRVAVQSERHRHV-------GAVQLVPAPRQAAQAADTGPR 160
R A ARG R++L V VR R + G+ + +P + A+ G
Sbjct: 123 ARAAGARGCRLRSQL--VPVRALGLGHRSDELVRFRFCSGSCRRARSPHDLSLASLLG-- 178
Query: 161 HASPGARRPAPGARRSRPRLLRP 183
GA RP PG+R RP
Sbjct: 179 ---AGALRPPPGSRPVSQPCCRP 198
>gi|209954776 neurotrophic factor artemin isoform 1 precursor [Homo
sapiens]
Length = 220
Score = 37.4 bits (85), Expect = 0.014
Identities = 43/143 (30%), Positives = 53/143 (37%), Gaps = 25/143 (17%)
Query: 48 PAGAGRRWRGGLRGGFAPAAARPRSAPRRRILGPGGRGPQAEVPLVLSERHVPAGIPGAR 107
P G RW G A RP P R P P L R AG PG+R
Sbjct: 66 PGGRTARWCSG-------RARRPPPQPSR----PAPPPPAPPSALPRGGRAARAGGPGSR 114
Query: 108 GRLAPARGGAARARLLAVEVRVAVQSERHRHV-------GAVQLVPAPRQAAQAADTGPR 160
R A ARG R++L V VR R + G+ + +P + A+ G
Sbjct: 115 ARAAGARGCRLRSQL--VPVRALGLGHRSDELVRFRFCSGSCRRARSPHDLSLASLLG-- 170
Query: 161 HASPGARRPAPGARRSRPRLLRP 183
GA RP PG+R RP
Sbjct: 171 ---AGALRPPPGSRPVSQPCCRP 190
>gi|209977029 neurotrophic factor artemin isoform 3 precursor [Homo
sapiens]
Length = 228
Score = 37.4 bits (85), Expect = 0.014
Identities = 43/143 (30%), Positives = 53/143 (37%), Gaps = 25/143 (17%)
Query: 48 PAGAGRRWRGGLRGGFAPAAARPRSAPRRRILGPGGRGPQAEVPLVLSERHVPAGIPGAR 107
P G RW G A RP P R P P L R AG PG+R
Sbjct: 74 PGGRTARWCSG-------RARRPPPQPSR----PAPPPPAPPSALPRGGRAARAGGPGSR 122
Query: 108 GRLAPARGGAARARLLAVEVRVAVQSERHRHV-------GAVQLVPAPRQAAQAADTGPR 160
R A ARG R++L V VR R + G+ + +P + A+ G
Sbjct: 123 ARAAGARGCRLRSQL--VPVRALGLGHRSDELVRFRFCSGSCRRARSPHDLSLASLLG-- 178
Query: 161 HASPGARRPAPGARRSRPRLLRP 183
GA RP PG+R RP
Sbjct: 179 ---AGALRPPPGSRPVSQPCCRP 198
>gi|7662234 rab11-family interacting protein 3 isoform 1 [Homo
sapiens]
Length = 756
Score = 37.0 bits (84), Expect = 0.018
Identities = 50/164 (30%), Positives = 63/164 (38%), Gaps = 29/164 (17%)
Query: 49 AGAGRRWRGG----LRGGF---APAAARPRSAPRRRILGPG--GRGPQAEVPLVLSERHV 99
A G RW G L GG P+A PRS PR ++ P G GP++E PL
Sbjct: 64 ADGGARWSAGPAPGLEGGPRDPGPSAPPPRSGPRGQLASPDAPGPGPRSEAPL------- 116
Query: 100 PAGIPGARGRLAPARGGAARARLLAVEVRVAVQSERHRHVGAVQL---VPAPRQAAQAAD 156
P P P G A A R+ S HR G V + PAP A +
Sbjct: 117 PELDPLFSWTEEPEECGPASCPESA-PFRLQGSSSSHRARGEVDVFSPFPAPTAGELALE 175
Query: 157 TG----PRHASPGARRPAP----GARRSRPRLLRPASVWNEGDG 192
G P+ + P P G++ PR LR +GDG
Sbjct: 176 QGPGSPPQPSDLSQTHPLPSEPVGSQEDGPR-LRAVFDALDGDG 218
Score = 32.0 bits (71), Expect = 0.59
Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 140 GAVQLVPAPRQAAQAADTG-PRHASPGARRPAPGA 173
GA QL P P + A G P SPG PAPGA
Sbjct: 28 GAAQLAPGPAELRLGAPVGGPDPQSPGLDEPAPGA 62
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 37.0 bits (84), Expect = 0.018
Identities = 71/247 (28%), Positives = 83/247 (33%), Gaps = 45/247 (18%)
Query: 42 DGQHVDPAGAGRRWRGGLRG--GFAPAAARPRSAPRRRILGPGGRGPQAEVPLVLSERHV 99
DG+ P AG R G +G GF P R G G +A P V E
Sbjct: 254 DGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGS 313
Query: 100 PA-----------GIPGARGRLAPARGGAARARLLAVEVRVAVQSERHRHVGAVQLVPAP 148
P G+PG RGR PA GAA AR + A G AP
Sbjct: 314 PGENGSPGPMGPRGLPGERGRTGPA--GAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAP 371
Query: 149 RQAAQAADTGPRHASPGARRP--APGARRSRPRLLRPASVWNEG----DGSHGM--FLGT 200
+A TG R GA+ P PG S + +G GS G G
Sbjct: 372 GAKGEAGPTGAR-GPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGA 430
Query: 201 PHFRCQWRRHSPRGPRARECMALKAVIAGPQRSQEEKVKHPRGQSGGSCGQQGFSGHSQV 260
P F PRGP GPQ + P+GQ+ G G GF G
Sbjct: 431 PGF------PGPRGP------------PGPQGATGP--LGPKGQT-GEPGIAGFKGEQGP 469
Query: 261 LASPGHA 267
PG A
Sbjct: 470 KGEPGPA 476
Score = 28.5 bits (62), Expect = 6.5
Identities = 34/108 (31%), Positives = 40/108 (37%), Gaps = 17/108 (15%)
Query: 23 GIPPI--PVRRGHCCSRVRVADGQHVDPAGA-GRRWRGGLRG-----GFAPAAARPRSAP 74
G+ PI P RG +R P GA G R GL G G P
Sbjct: 499 GVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPG 558
Query: 75 RRRILG-PGGRGPQAEVPLVLSERHVPAGIPGARGRLAPARGGAARAR 121
R + G PG GPQ +V P+G PG GR P AR +
Sbjct: 559 ARGLTGRPGDAGPQGKVG--------PSGAPGEDGRPGPPGPQGARGQ 598
Score = 28.1 bits (61), Expect = 8.5
Identities = 26/78 (33%), Positives = 31/78 (39%), Gaps = 17/78 (21%)
Query: 41 ADGQHVDPAGAGRRWRGGLRGGF-APAAARPRSAPRRR----ILGP-GGRGPQAEVPLVL 94
ADGQ P G + G +G AP P AP + + GP G RG Q
Sbjct: 841 ADGQ---PGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGAT- 896
Query: 95 SERHVPAGIPGARGRLAP 112
G PGA GR+ P
Sbjct: 897 -------GFPGAAGRVGP 907
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 37.0 bits (84), Expect = 0.018
Identities = 71/247 (28%), Positives = 83/247 (33%), Gaps = 45/247 (18%)
Query: 42 DGQHVDPAGAGRRWRGGLRG--GFAPAAARPRSAPRRRILGPGGRGPQAEVPLVLSERHV 99
DG+ P AG R G +G GF P R G G +A P V E
Sbjct: 185 DGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGS 244
Query: 100 PA-----------GIPGARGRLAPARGGAARARLLAVEVRVAVQSERHRHVGAVQLVPAP 148
P G+PG RGR PA GAA AR + A G AP
Sbjct: 245 PGENGSPGPMGPRGLPGERGRTGPA--GAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAP 302
Query: 149 RQAAQAADTGPRHASPGARRP--APGARRSRPRLLRPASVWNEG----DGSHGM--FLGT 200
+A TG R GA+ P PG S + +G GS G G
Sbjct: 303 GAKGEAGPTGAR-GPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGA 361
Query: 201 PHFRCQWRRHSPRGPRARECMALKAVIAGPQRSQEEKVKHPRGQSGGSCGQQGFSGHSQV 260
P F PRGP GPQ + P+GQ+ G G GF G
Sbjct: 362 PGF------PGPRGP------------PGPQGATGP--LGPKGQT-GEPGIAGFKGEQGP 400
Query: 261 LASPGHA 267
PG A
Sbjct: 401 KGEPGPA 407
Score = 28.5 bits (62), Expect = 6.5
Identities = 34/108 (31%), Positives = 40/108 (37%), Gaps = 17/108 (15%)
Query: 23 GIPPI--PVRRGHCCSRVRVADGQHVDPAGA-GRRWRGGLRG-----GFAPAAARPRSAP 74
G+ PI P RG +R P GA G R GL G G P
Sbjct: 430 GVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPG 489
Query: 75 RRRILG-PGGRGPQAEVPLVLSERHVPAGIPGARGRLAPARGGAARAR 121
R + G PG GPQ +V P+G PG GR P AR +
Sbjct: 490 ARGLTGRPGDAGPQGKVG--------PSGAPGEDGRPGPPGPQGARGQ 529
Score = 28.1 bits (61), Expect = 8.5
Identities = 26/78 (33%), Positives = 31/78 (39%), Gaps = 17/78 (21%)
Query: 41 ADGQHVDPAGAGRRWRGGLRGGF-APAAARPRSAPRRR----ILGP-GGRGPQAEVPLVL 94
ADGQ P G + G +G AP P AP + + GP G RG Q
Sbjct: 772 ADGQ---PGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGAT- 827
Query: 95 SERHVPAGIPGARGRLAP 112
G PGA GR+ P
Sbjct: 828 -------GFPGAAGRVGP 838
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.136 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,709,748
Number of Sequences: 37866
Number of extensions: 814400
Number of successful extensions: 4638
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 352
Number of HSP's that attempted gapping in prelim test: 4256
Number of HSP's gapped (non-prelim): 706
length of query: 272
length of database: 18,247,518
effective HSP length: 101
effective length of query: 171
effective length of database: 14,423,052
effective search space: 2466341892
effective search space used: 2466341892
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.