Guide to the Human Genome
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Name: ARTN Sequence: fasta or formatted (228aa) NCBI GI: 209977029
Description:

neurotrophic factor artemin isoform 3 precursor

Referenced in:

Neurons

Other entries for this name:
alt prot [237aa] neurotrophic factor artemin isoform 2
alt prot [220aa] neurotrophic factor artemin isoform 1 precursor
alt mRNA [228aa] neurotrophic factor artemin isoform 3 precursor
alt prot [220aa] neurotrophic factor artemin isoform 1 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.0         32           2
 C cysteine            3.9          9           2
 D aspartate           1.8          4           1
 E glutamate           2.2          5           1
 F phenylalanine       1.3          3           1
 G glycine            11.0         25           2
 H histidine           1.8          4           1
 I isoleucine          0.0          0           0
 K lysine              0.0          0           0
 L leucine            11.8         27           2
 M methionine          0.9          2           1
 N asparagine          0.4          1           1
 P proline            14.9         34           4
 Q glutamine           2.6          6           2
 R arginine           13.2         30           2
 S serine             11.0         25           2
 T threonine           3.1          7           1
 V valine              3.9          9           1
 W tryptophan          1.8          4           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   neurotrophic factor artemin isoform 3 precursor [Ho... 
ARTN                  1.000   neurotrophic factor artemin isoform 3 precursor [Ho...
ARTN                  0.951   neurotrophic factor artemin isoform 1 precursor [Ho...
ARTN                  0.951   neurotrophic factor artemin isoform 1 precursor [Ho...
ARTN                  0.904   neurotrophic factor artemin isoform 2 
NRTN                  0.156   neurturin preproprotein 
PSPN                  0.153   persephin precursor 
GDNF                  0.100   glial cell derived neurotrophic factor isoform 3 [Ho...
GDNF                  0.098   glial cell derived neurotrophic factor isoform 2 pre...
GDNF                  0.098   glial cell derived neurotrophic factor isoform 1 prep...
SAMD1                 0.060   sterile alpha motif domain containing 1 
FLJ37078              0.051   hypothetical protein LOC222183 
LMTK3                 0.051   lemur tyrosine kinase 3 
PRB1                  0.051   proline-rich protein BstNI subfamily 1 isoform 1 pre...
RANBP9                0.049   RAN binding protein 9 
SALL3                 0.049   sal-like 3 
BPTF                  0.049   bromodomain PHD finger transcription factor isoform ...
BPTF                  0.049   bromodomain PHD finger transcription factor isoform ...
LOC283999             0.047   hypothetical protein LOC283999 
WAS                   0.047   Wiskott-Aldrich syndrome protein 
SCAF1                 0.044   SR-related CTD-associated factor 1 
ZFPM1                 0.044   zinc finger protein, multitype 1 
CNOT3                 0.044   CCR4-NOT transcription complex, subunit 3 
FMNL1                 0.044   formin-like 1 
KIFC2                 0.044   kinesin family member C2 
MLL4                  0.042   myeloid/lymphoid or mixed-lineage leukemia 4 
FMN1                  0.042   formin 1 
WASF1                 0.042   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.042   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.042   Wiskott-Aldrich syndrome protein family member 1 [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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