Guide to the Human Genome
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Name: LOC100292292 Sequence: fasta or formatted (297aa) NCBI GI: 239755255
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.8         47           3
 C cysteine            1.7          5           1
 D aspartate           2.0          6           1
 E glutamate           4.4         13           2
 F phenylalanine       0.3          1           1
 G glycine            18.2         54           3
 H histidine           4.7         14           1
 I isoleucine          1.7          5           1
 K lysine              0.7          2           1
 L leucine             8.4         25           3
 M methionine          0.7          2           1
 N asparagine          1.0          3           1
 P proline            10.4         31           2
 Q glutamine           5.1         15           2
 R arginine            9.8         29           3
 S serine              4.7         14           1
 T threonine           1.3          4           1
 V valine              7.1         21           2
 W tryptophan          2.0          6           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100291384          0.865   PREDICTED: hypothetical protein XP_002347156 
LOC100287578          0.865   PREDICTED: hypothetical protein XP_002343004 
LOC100291560          0.064   PREDICTED: hypothetical protein XP_002345645 
LOC100289976          0.064   PREDICTED: hypothetical protein XP_002346488 
LOC100288941          0.064   PREDICTED: hypothetical protein XP_002342332 
EVX2                  0.045   even-skipped homeobox 2 
LOC651986             0.042   PREDICTED: similar to forkhead box L2 
LOC100292370          0.040   PREDICTED: hypothetical protein 
LOC100288524          0.039   PREDICTED: hypothetical protein XP_002342748 
LTK                   0.035   leukocyte receptor tyrosine kinase isoform 1 precurs...
LOC728767             0.034   PREDICTED: hypothetical protein 
LOC728767             0.034   PREDICTED: hypothetical protein 
LOC100291129          0.034   PREDICTED: hypothetical protein XP_002347815 
LOC100294343          0.034   PREDICTED: hypothetical protein XP_002344111 
KRT1                  0.034   keratin 1 
COL1A1                0.034   alpha 1 type I collagen preproprotein 
XYLT1                 0.034   xylosyltransferase I 
LOC100129463          0.034   PREDICTED: hypothetical protein 
LOC100129463          0.034   PREDICTED: hypothetical protein 
LOC100129463          0.034   PREDICTED: hypothetical protein 
LOC100129463          0.032   PREDICTED: hypothetical protein 
LOC100290946          0.032   PREDICTED: hypothetical protein XP_002347121 
LOC100288840          0.032   PREDICTED: hypothetical protein XP_002344246 
FGF2                  0.032   fibroblast growth factor 2 
FAM181B               0.029   hypothetical protein LOC220382 
ARID1B                0.029   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.029   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.029   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
LOC100290009          0.029   PREDICTED: hypothetical protein XP_002346608 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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