Guide to the Human Genome
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Name: ARTN Sequence: fasta or formatted (237aa) NCBI GI: 16950645
Description:

neurotrophic factor artemin isoform 2

Referenced in:

Neurons

Other entries for this name:
alt prot [220aa] neurotrophic factor artemin isoform 1 precursor
alt prot [228aa] neurotrophic factor artemin isoform 3 precursor
alt prot [220aa] neurotrophic factor artemin isoform 1 precursor
alt prot [228aa] neurotrophic factor artemin isoform 3 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.8         35           2
 C cysteine            3.4          8           2
 D aspartate           1.7          4           1
 E glutamate           2.5          6           1
 F phenylalanine       1.7          4           1
 G glycine            10.5         25           2
 H histidine           1.7          4           1
 I isoleucine          0.4          1           1
 K lysine              0.0          0           0
 L leucine            12.7         30           2
 M methionine          0.8          2           1
 N asparagine          0.4          1           1
 P proline            15.6         37           4
 Q glutamine           2.5          6           1
 R arginine           12.7         30           2
 S serine             10.1         24           2
 T threonine           2.5          6           1
 V valine              4.2         10           1
 W tryptophan          1.3          3           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   neurotrophic factor artemin isoform 2 
ARTN                  0.879   neurotrophic factor artemin isoform 3 precursor [Ho...
ARTN                  0.879   neurotrophic factor artemin isoform 3 precursor [Ho...
ARTN                  0.849   neurotrophic factor artemin isoform 1 precursor [Ho...
ARTN                  0.849   neurotrophic factor artemin isoform 1 precursor [Ho...
NRTN                  0.151   neurturin preproprotein 
PSPN                  0.149   persephin precursor 
GDNF                  0.097   glial cell derived neurotrophic factor isoform 3 [Ho...
GDNF                  0.095   glial cell derived neurotrophic factor isoform 2 pre...
GDNF                  0.095   glial cell derived neurotrophic factor isoform 1 prep...
SAMD1                 0.063   sterile alpha motif domain containing 1 
SALL3                 0.058   sal-like 3 
FLJ37078              0.050   hypothetical protein LOC222183 
LMTK3                 0.050   lemur tyrosine kinase 3 
PRB1                  0.050   proline-rich protein BstNI subfamily 1 isoform 1 pre...
RANBP9                0.048   RAN binding protein 9 
BPTF                  0.048   bromodomain PHD finger transcription factor isoform ...
BPTF                  0.048   bromodomain PHD finger transcription factor isoform ...
WIPF2                 0.048   WIRE protein 
ZFPM1                 0.045   zinc finger protein, multitype 1 
LOC283999             0.045   hypothetical protein LOC283999 
WAS                   0.045   Wiskott-Aldrich syndrome protein 
MLL4                  0.045   myeloid/lymphoid or mixed-lineage leukemia 4 
CNOT3                 0.045   CCR4-NOT transcription complex, subunit 3 
SCAF1                 0.043   SR-related CTD-associated factor 1 
FMNL1                 0.043   formin-like 1 
SYNJ1                 0.043   synaptojanin 1 isoform d 
PNRC1                 0.043   proline-rich nuclear receptor coactivator 1 
FLJ22184              0.041   PREDICTED: hypothetical protein FLJ22184 
FMN1                  0.041   formin 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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