Guide to the Human Genome
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Name: LOC100289669 Sequence: fasta or formatted (157aa) NCBI GI: 239741900
Description:

PREDICTED: hypothetical protein XP_002342343

Not currently referenced in the text

Other entries for this name:
alt mRNA {157aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.1         19           2
 C cysteine            1.3          2           1
 D aspartate           1.9          3           1
 E glutamate           3.2          5           2
 F phenylalanine       1.9          3           1
 G glycine            10.2         16           2
 H histidine           6.4         10           3
 I isoleucine          0.6          1           1
 K lysine              5.7          9           2
 L leucine             9.6         15           2
 M methionine          1.3          2           1
 N asparagine          1.9          3           1
 P proline            10.8         17           2
 Q glutamine           7.0         11           1
 R arginine            7.0         11           2
 S serine              7.6         12           1
 T threonine           7.6         12           2
 V valine              1.9          3           1
 W tryptophan          1.9          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342343 
LOC100292691          1.000   PREDICTED: hypothetical protein 
LOC100289669          1.000   PREDICTED: hypothetical protein 
MSH4                  0.042   mutS homolog 4 
EGLN1                 0.026   egl nine homolog 1 
FHDC1                 0.026   FH2 domain containing 1 
MLL4                  0.026   myeloid/lymphoid or mixed-lineage leukemia 4 
GJA3                  0.026   connexin 46 
COL2A1                0.023   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.023   collagen, type II, alpha 1 isoform 2 precursor [Hom...
LOC100292291          0.023   PREDICTED: hypothetical protein 
LOC100290604          0.023   PREDICTED: hypothetical protein XP_002346941 
LOC100287848          0.023   PREDICTED: hypothetical protein XP_002342070 
ZNF358                0.023   zinc finger protein 358 
C6orf150              0.023   hypothetical protein LOC115004 
IGSF9                 0.023   immunoglobulin superfamily, member 9 isoform a [Hom...
IGSF9                 0.023   immunoglobulin superfamily, member 9 isoform b [Hom...
EGR3                  0.023   early growth response 3 
HOXC4                 0.023   homeobox C4 
HOXC4                 0.023   homeobox C4 
ZNF318                0.023   zinc finger protein 318 
KIAA0368              0.023   KIAA0368 protein 
SAPS1                 0.020   SAPS domain family, member 1 
GLI1                  0.020   GLI family zinc finger 1 isoform 2 
GLI1                  0.020   GLI family zinc finger 1 isoform 1 
TNS1                  0.020   tensin 
NPAS1                 0.020   neuronal PAS domain protein 1 
KDM6B                 0.016   lysine (K)-specific demethylase 6B 
EGR2                  0.016   early growth response 2 protein isoform b 
EGR2                  0.016   early growth response 2 protein isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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