Guide to the Human Genome
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Name: EGLN1 Sequence: fasta or formatted (426aa) NCBI GI: 13489073
Description:

egl nine homolog 1

Referenced in:

Oxygen Sensing and Hemoglobin
Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.1         43           4
 C cysteine            3.5         15           2
 D aspartate           6.6         28           2
 E glutamate           5.4         23           2
 F phenylalanine       2.6         11           2
 G glycine            11.0         47           3
 H histidine           2.3         10           1
 I isoleucine          3.3         14           1
 K lysine              7.7         33           2
 L leucine             6.1         26           2
 M methionine          1.4          6           1
 N asparagine          3.5         15           1
 P proline             8.0         34           3
 Q glutamine           3.3         14           2
 R arginine            6.6         28           2
 S serine              6.1         26           2
 T threonine           3.1         13           1
 V valine              5.2         22           2
 W tryptophan          1.2          5           1
 Y tyrosine            3.1         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   egl nine homolog 1 
EGLN2                 0.353   EGL nine (C.elegans) homolog 2 
EGLN2                 0.353   EGL nine (C.elegans) homolog 2 
EGLN3                 0.329   egl nine homolog 3 
SMYD2                 0.026   SET and MYND domain containing 2 
TDRD1                 0.023   tudor domain containing 1 
LOC100290679          0.023   PREDICTED: hypothetical protein XP_002347834 
LOC100288571          0.023   PREDICTED: hypothetical protein XP_002343612 
SPRED3                0.022   sprouty-related, EVH1 domain containing 3 isoform a...
ZMYND10               0.022   zinc finger, MYND domain-containing 10 
LOC100293107          0.022   PREDICTED: hypothetical protein 
RUNX1T1               0.020   acute myelogenous leukemia 1 translocation 1 protein...
RUNX1T1               0.020   acute myelogenous leukemia 1 translocation 1 protein...
RUNX1T1               0.020   acute myelogenous leukemia 1 translocation 1 protein...
RUNX1T1               0.020   acute myelogenous leukemia 1 translocation 1 protein ...
LOC100130128          0.020   PREDICTED: hypothetical protein 
LOC100130128          0.020   PREDICTED: hypothetical protein 
LOC100130128          0.020   PREDICTED: hypothetical protein 
PDCD2                 0.020   programmed cell death 2 isoform 2 
PDCD2                 0.020   programmed cell death 2 isoform 1 
BAT2                  0.020   HLA-B associated transcript-2 
DEAF1                 0.018   deformed epidermal autoregulatory factor 1 
LOC100294411          0.018   PREDICTED: similar to deformed epidermal autoregula...
BSN                   0.018   bassoon protein 
KRTAP4-6              0.018   PREDICTED: keratin associated protein 4.6 
ZMYND17               0.018   zinc finger, MYND domain containing 17 
CBFA2T3               0.017   myeloid translocation gene on chromosome 16 isoform ...
CBFA2T3               0.017   myeloid translocation gene on chromosome 16 isoform ...
ONECUT3               0.017   one cut homeobox 3 
SAMD1                 0.017   sterile alpha motif domain containing 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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