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Search of human proteins with 239741359
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741359 PREDICTED: hypothetical protein XP_002342184 [Homo
sapiens]
(168 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239741359 PREDICTED: hypothetical protein XP_002342184 [Homo ... 355 1e-98
gi|239741753 PREDICTED: hypothetical protein [Homo sapiens] 42 2e-04
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 42 3e-04
gi|48762934 alpha 2 type I collagen [Homo sapiens] 41 6e-04
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 41 6e-04
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 40 0.001
gi|239753975 PREDICTED: hypothetical protein [Homo sapiens] 39 0.002
gi|169205117 PREDICTED: hypothetical protein [Homo sapiens] 39 0.002
gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens] 39 0.002
gi|169204928 PREDICTED: hypothetical protein [Homo sapiens] 38 0.005
gi|169213235 PREDICTED: hypothetical protein [Homo sapiens] 38 0.005
gi|113423861 PREDICTED: hypothetical protein [Homo sapiens] 38 0.005
gi|169212744 PREDICTED: hypothetical protein [Homo sapiens] 38 0.005
gi|113423437 PREDICTED: hypothetical protein [Homo sapiens] 38 0.005
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 37 0.006
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 37 0.006
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 37 0.006
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 37 0.006
gi|239750914 PREDICTED: hypothetical protein XP_002347614 [Homo ... 37 0.006
gi|239745312 PREDICTED: hypothetical protein XP_002343435 [Homo ... 37 0.006
gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor ... 37 0.006
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 37 0.008
gi|119395760 diaphanous 1 isoform 2 [Homo sapiens] 37 0.010
gi|119395758 diaphanous 1 isoform 1 [Homo sapiens] 37 0.010
gi|145309324 FH2 domain containing 1 [Homo sapiens] 37 0.010
gi|13994280 C1q and tumor necrosis factor related protein 7 isof... 36 0.014
gi|206597454 C1q and tumor necrosis factor related protein 7 iso... 36 0.014
gi|206597452 C1q and tumor necrosis factor related protein 7 iso... 36 0.014
gi|117938310 sine oculis binding protein homolog [Homo sapiens] 36 0.014
gi|4885407 hyperpolarization activated cyclic nucleotide-gated p... 36 0.018
>gi|239741359 PREDICTED: hypothetical protein XP_002342184 [Homo
sapiens]
Length = 168
Score = 355 bits (910), Expect = 1e-98
Identities = 168/168 (100%), Positives = 168/168 (100%)
Query: 1 MESPGYFIAVLRGQLMPPAASPSPRRWLSPLLGFANGSGSEGHLCISPPEAPPPPLPAAG 60
MESPGYFIAVLRGQLMPPAASPSPRRWLSPLLGFANGSGSEGHLCISPPEAPPPPLPAAG
Sbjct: 1 MESPGYFIAVLRGQLMPPAASPSPRRWLSPLLGFANGSGSEGHLCISPPEAPPPPLPAAG 60
Query: 61 PAGVRGPQPPAGKAGLERPLRVWREGRLSGKGWRETPATTPKLLRARWRGHGGRLILGVA 120
PAGVRGPQPPAGKAGLERPLRVWREGRLSGKGWRETPATTPKLLRARWRGHGGRLILGVA
Sbjct: 61 PAGVRGPQPPAGKAGLERPLRVWREGRLSGKGWRETPATTPKLLRARWRGHGGRLILGVA 120
Query: 121 VGPIGCLLGPGEAETAHSGIREPPAARPRRGDWEAHTAVSQPAAVALV 168
VGPIGCLLGPGEAETAHSGIREPPAARPRRGDWEAHTAVSQPAAVALV
Sbjct: 121 VGPIGCLLGPGEAETAHSGIREPPAARPRRGDWEAHTAVSQPAAVALV 168
>gi|239741753 PREDICTED: hypothetical protein [Homo sapiens]
Length = 274
Score = 42.0 bits (97), Expect = 2e-04
Identities = 41/116 (35%), Positives = 51/116 (43%), Gaps = 16/116 (13%)
Query: 48 PPEAPPPPLP---AAGPAGVRGPQP-------PAGKAGLERPLRVWREGRLSGKGWRETP 97
PP PPP P A GP G+ P PAGKA +R R G +G+ R +P
Sbjct: 116 PPGTPPPRCPRTLAPGPRGLFPAPPPAPARTGPAGKAAADR----GRPGPAAGRRVRRSP 171
Query: 98 ATTPKLLRARWRGHGGRLILGVAVGPIGCL-LGPGEAETAHSGIREPPAARPRRGD 152
+ P LL G G L L + + G + LG G E G R AAR RG+
Sbjct: 172 SFPPFLLAQTRLGRTGPLALCLLLLLHGAMRLGGGSREKLACG-RAGRAARTGRGE 226
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 41.6 bits (96), Expect = 3e-04
Identities = 46/146 (31%), Positives = 55/146 (37%), Gaps = 20/146 (13%)
Query: 15 LMPPAASPSPRRWLSPLLGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKA 74
LMP + P R L G G+G G PP P P P GP G RGP+ P GK
Sbjct: 210 LMPGSVGPVGPRGPQGLQGQQGGAGPTG-----PPGEPGDPGPM-GPIGSRGPEGPPGKP 263
Query: 75 GLE-------RPLRVWREGRLSGKGWRETPATTPKLLRARWRGHGGRLILGVAVGPIGCL 127
G + P V G +G+ P P L +GH G L G +G
Sbjct: 264 GEDGEPGRNGNPGEVGFAGSPGARGFPGAPG-LPGL-----KGHRGHKGLEGPKGEVGAP 317
Query: 128 LGPGEA-ETAHSGIREPPAARPRRGD 152
GEA T G P R G+
Sbjct: 318 GSKGEAGPTGPMGAMGPLGPRGMPGE 343
Score = 30.4 bits (67), Expect = 0.75
Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 11/66 (16%)
Query: 19 AASPSPRRWLSPLLGFANGSGSEGHLCISPPEAPPPPLPAA-----GPAGVRGPQPPAGK 73
A SP P + + G G G++G PP A P A GPAG GP P G+
Sbjct: 881 AGSPGPHG-PNGVPGLKGGRGTQG-----PPGATGFPGSAGRVGPPGPAGAPGPAGPLGE 934
Query: 74 AGLERP 79
G E P
Sbjct: 935 PGKEGP 940
Score = 30.4 bits (67), Expect = 0.75
Identities = 36/133 (27%), Positives = 49/133 (36%), Gaps = 24/133 (18%)
Query: 26 RWLSPLLGFANGSGSEGHLCISPPEAPPPPLP---AAGPAGVRGPQPPAGKAGLERPLRV 82
R + L G A G G + + PP P+ + GP G GP+ PAG G
Sbjct: 1004 RGMPGLPGPAGTPGKVGPTGATGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTP----- 1058
Query: 83 WREGRLSGKGWRETPATTPKLLRARWRGHGGRLILGVAVGPIGCLLGPGEA----ETAHS 138
R+G + +G R P G G GP+G PG+A +
Sbjct: 1059 GRDGAVGERGDRGDPGPA---------GLPGSQGAPGTPGPVG---APGDAGQRGDPGSR 1106
Query: 139 GIREPPAARPRRG 151
G PP +RG
Sbjct: 1107 GPIGPPGRAGKRG 1119
Score = 29.6 bits (65), Expect = 1.3
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 14 QLMPPAASPSPRRWLSPLLGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGK 73
Q +P P+ + + + G G G + S E P PL GP GVRG G+
Sbjct: 1151 QGLPGPPGPNGEQGSAGIPGPFGPRGPPGPVGPSGKEGNPGPLGPIGPPGVRG---SVGE 1207
Query: 74 AGLERP 79
AG E P
Sbjct: 1208 AGPEGP 1213
Score = 28.9 bits (63), Expect = 2.2
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 12 RGQLMPPAASPSPRRWLSPLLGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPA 71
RG+ PP SP L +G G++G SP + PP +AGP G GPQ
Sbjct: 404 RGETGPPGPVGSPG--LPGAIGTDGTPGAKGPTG-SPGTSGPPG--SAGPPGSPGPQGST 458
Query: 72 GKAGL 76
G G+
Sbjct: 459 GPQGI 463
Score = 28.1 bits (61), Expect = 3.7
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 9/48 (18%)
Query: 32 LGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAGLERP 79
LG SG G+ P AGP G RGP+ P G+ G P
Sbjct: 371 LGIPGSSGFPGN---------PGMKGEAGPTGARGPEGPQGQRGETGP 409
Score = 27.7 bits (60), Expect = 4.8
Identities = 23/85 (27%), Positives = 30/85 (35%), Gaps = 5/85 (5%)
Query: 16 MPPAASPSPRRWLSPLLGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAG 75
MP P + GF G +G + P P G G GP P G G
Sbjct: 361 MPGKPGPMGPLGIPGSSGFPGNPGMKGEAGPTGARGPEGP---QGQRGETGPPGPVGSPG 417
Query: 76 LERPLRVWREGRLSGKGWRETPATT 100
L P + +G KG +P T+
Sbjct: 418 L--PGAIGTDGTPGAKGPTGSPGTS 440
Score = 27.7 bits (60), Expect = 4.8
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 33 GFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAGLERP 79
G G +G + S P PP AG G +GP P G GL P
Sbjct: 639 GQRGAPGKDGEVGPSGPVGPP---GLAGERGEQGPPGPTGFQGLPGP 682
Score = 27.3 bits (59), Expect = 6.3
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 8/64 (12%)
Query: 18 PAASPSPRRWLSP--LLGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAG 75
P SP P+ P + G G G + P+ P GP G++GP P G+ G
Sbjct: 448 PPGSPGPQGSTGPQGIRGQPGDPGVPGFKGEAGPKGEP------GPHGIQGPIGPPGEEG 501
Query: 76 LERP 79
P
Sbjct: 502 KRGP 505
Score = 27.3 bits (59), Expect = 6.3
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 33 GFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAG 75
G +G++G + P PP P AGP G +G P G G
Sbjct: 786 GAEGTAGNDGARGLPGPLGPPGP---AGPTGEKGEPGPRGLVG 825
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 40.8 bits (94), Expect = 6e-04
Identities = 42/138 (30%), Positives = 50/138 (36%), Gaps = 9/138 (6%)
Query: 22 PSPRRWLSPLLGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAGLE---- 77
P P + P G +G+ G P P GPAG RGP P GKAG +
Sbjct: 90 PGPMGLMGPR-GPPGAAGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGHPG 148
Query: 78 RPLRVWREGRLSGKGWRETPATTPKLLRARWRGHGGRLILGVAVGPIGCLLGPG----EA 133
+P R G + +G R P T RGH G L G G PG
Sbjct: 149 KPGRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENG 208
Query: 134 ETAHSGIREPPAARPRRG 151
+G R P R R G
Sbjct: 209 TPGQTGARGLPGERGRVG 226
Score = 40.0 bits (92), Expect = 0.001
Identities = 34/117 (29%), Positives = 43/117 (36%), Gaps = 12/117 (10%)
Query: 18 PAASPSPRRWLSP--LLGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAG 75
P +P P+ L +LG G G ++ P PL AGP G RGP G G
Sbjct: 857 PPGTPGPQGLLGAPGILGLPGSRGERGLPGVAGAVGEPGPLGIAGPPGARGPPGAVGSPG 916
Query: 76 LE-RPLRVWREGRLSGKGWRETPATTPKLLRARWRGHGGRLILGVAVGPIGCLLGPG 131
+ P R+G G P R GH G +GP+G PG
Sbjct: 917 VNGAPGEAGRDGNPGNDG---PPG------RDGQPGHKGERGYPGNIGPVGAAGAPG 964
Score = 34.7 bits (78), Expect = 0.040
Identities = 23/64 (35%), Positives = 26/64 (40%), Gaps = 8/64 (12%)
Query: 12 RGQLMPPAASPSPRRWLSPLLGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPA 71
RG PP + P G A +G G IS P PP P G G RG Q P
Sbjct: 777 RGDGGPPGMTGFP--------GAAGRTGPPGPSGISGPPGPPGPAGKEGLRGPRGDQGPV 828
Query: 72 GKAG 75
G+ G
Sbjct: 829 GRTG 832
Score = 33.9 bits (76), Expect = 0.067
Identities = 24/72 (33%), Positives = 29/72 (40%), Gaps = 14/72 (19%)
Query: 18 PAASPSPRRWLSPL--------LGFANGSGSEGHLCISPPEA------PPPPLPAAGPAG 63
P SP R + P G A G++G P+ P P+ AAGPAG
Sbjct: 707 PRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAG 766
Query: 64 VRGPQPPAGKAG 75
GP PAG G
Sbjct: 767 PNGPPGPAGSRG 778
Score = 32.0 bits (71), Expect = 0.26
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 52 PPPPLPAAGPAGVRGPQPPAGKAG 75
PP A+GPAGVRGP AG+ G
Sbjct: 419 PPGSRGASGPAGVRGPNGDAGRPG 442
Score = 31.2 bits (69), Expect = 0.44
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 33 GFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAGLERP 79
G SG++G + P+ PP P +G G RGP AG AG P
Sbjct: 352 GSKGESGNKGEPGSAGPQGPPGP---SGEEGKRGPNGEAGSAGPPGP 395
Score = 30.4 bits (67), Expect = 0.75
Identities = 43/145 (29%), Positives = 52/145 (35%), Gaps = 30/145 (20%)
Query: 11 LRGQLMPPA---ASPSPRRWLSPLLGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGP 67
LRG++ P A +P +P G A +G G + P P P + G G GP
Sbjct: 662 LRGEIGNPGRDGARGAPGAVGAP--GPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGP 719
Query: 68 QPPAGKAGLERPLRVWREGRLSGKGWRETPATTPKLLRARWRGHGGRLILGVAVGPIGCL 127
P G AG G+ KG E A PK G G VGP G +
Sbjct: 720 AGPNGFAG-----PAGAAGQPGAKG--ERGAKGPK-------GENG------VVGPTGPV 759
Query: 128 LGPGEAETAHSGIREPPAARPRRGD 152
G A G PP RGD
Sbjct: 760 GAAGPA-----GPNGPPGPAGSRGD 779
Score = 29.6 bits (65), Expect = 1.3
Identities = 40/143 (27%), Positives = 50/143 (34%), Gaps = 28/143 (19%)
Query: 33 GFANGSGSEGHLCISPPEAP-----PPPLPA-------------AGPAGVRGPQPPAGKA 74
G A GS+G + P P PP P AGPAG GP+ G
Sbjct: 229 GPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGPRGEVGLP 288
Query: 75 GLERPL----RVWREGRLSGKGWRETPATTPKLLRARWRGHGGRLILGVAVGPIGCLLGP 130
GL P+ G KG P RG G + A G G + P
Sbjct: 289 GLSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEP 348
Query: 131 GEA----ETAHSGIREPPAARPR 149
G A E+ + G EP +A P+
Sbjct: 349 GPAGSKGESGNKG--EPGSAGPQ 369
Score = 28.9 bits (63), Expect = 2.2
Identities = 16/47 (34%), Positives = 20/47 (42%)
Query: 33 GFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAGLERP 79
G A G+ G + + PP P G G +GP P G GL P
Sbjct: 514 GLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPPGPPGFQGLPGP 560
Score = 28.9 bits (63), Expect = 2.2
Identities = 38/138 (27%), Positives = 48/138 (34%), Gaps = 3/138 (2%)
Query: 16 MPPAASPSPRRWLSPLLGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAG 75
+P A P R G A +G G S P P G G G P+G +G
Sbjct: 581 LPGPAGPRGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSG 640
Query: 76 LERPLRVWREGRLSGKGWRETPATTPKLLRARWRGHGGRLILGVAVGPIGCLLGPGEAET 135
L P G GKG + P ++ G G A GP G GEA
Sbjct: 641 L--PGERGAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGAPGPAGATGDRGEAGA 698
Query: 136 A-HSGIREPPAARPRRGD 152
A +G P + RG+
Sbjct: 699 AGPAGPAGPRGSPGERGE 716
Score = 28.9 bits (63), Expect = 2.2
Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 7/57 (12%)
Query: 19 AASPSPRRWLSPLLGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAG 75
A +P P + P +G G+ + P P P A GP G GPQ G G
Sbjct: 960 AGAPGPHGPVGP-------AGKHGNRGETGPSGPVGPAGAVGPRGPSGPQGIRGDKG 1009
Score = 28.9 bits (63), Expect = 2.2
Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 12/64 (18%)
Query: 28 LSPLLGFANGSGSEGHLCISPPEAPPPPLPAAG------------PAGVRGPQPPAGKAG 75
L + G G+ G + + P P P AG PAG+RGPQ G AG
Sbjct: 1031 LPGIAGHHGDQGAPGSVGPAGPRGPAGPSGPAGKDGRTGHPGTVGPAGIRGPQGHQGPAG 1090
Query: 76 LERP 79
P
Sbjct: 1091 PPGP 1094
Score = 28.5 bits (62), Expect = 2.8
Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 17/79 (21%)
Query: 55 PLPAAGPAGVRGPQPPAGKAGLERPLRVWREGRLSGKGWRETPATTPKL---LRARWRGH 111
P GP G RGP P G+ G + P +G P P L A++ G
Sbjct: 34 PAGDRGPRGERGPPGPPGRDGEDGP---------TGPPGPPGPPGPPGLGGNFAAQYDGK 84
Query: 112 GGRLILGVAVGPIGCLLGP 130
G +G+ GP+G L+GP
Sbjct: 85 G----VGLGPGPMG-LMGP 98
Score = 28.5 bits (62), Expect = 2.8
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 12/49 (24%)
Query: 31 LLGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAGLERP 79
+ GF +G G PP P +GP G P PAGK GL P
Sbjct: 785 MTGFPGAAGRTG---------PPGPSGISGPPG---PPGPAGKEGLRGP 821
Score = 27.7 bits (60), Expect = 4.8
Identities = 19/60 (31%), Positives = 23/60 (38%)
Query: 17 PPAASPSPRRWLSPLLGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAGL 76
P + P+ R + G A G GH P P GPAG GP P G G+
Sbjct: 1044 PGSVGPAGPRGPAGPSGPAGKDGRTGHPGTVGPAGIRGPQGHQGPAGPPGPPGPPGPPGV 1103
Score = 26.9 bits (58), Expect = 8.3
Identities = 48/157 (30%), Positives = 56/157 (35%), Gaps = 30/157 (19%)
Query: 33 GFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAGLERPLRVWREG-----R 87
G +G G + P PP GPAG RG P G G P R G
Sbjct: 751 GVVGPTGPVGAAGPAGPNGPP------GPAGSRGDGGPPGMTGF--PGAAGRTGPPGPSG 802
Query: 88 LSGKGWRETPATTPKLLRARW-RGHGGRLILGVAVGPIGCL--LGP-GEAETA------- 136
+SG PA L R +G GR AVGP G GP GEA TA
Sbjct: 803 ISGPPGPPGPAGKEGLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGEAGTAGPPGTPG 862
Query: 137 ------HSGIREPPAARPRRGDWEAHTAVSQPAAVAL 167
GI P +R RG AV +P + +
Sbjct: 863 PQGLLGAPGILGLPGSRGERGLPGVAGAVGEPGPLGI 899
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 40.8 bits (94), Expect = 6e-04
Identities = 46/154 (29%), Positives = 58/154 (37%), Gaps = 32/154 (20%)
Query: 12 RGQLMPPAASPSPRRWLSPLLGFAN---GSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQ 68
+G+L PP P + + L GF G G G + + PP P+ A G G RGP
Sbjct: 958 KGELGPPG--PLGKEGPAGLRGFPGPKGGPGDPGPTGLKGDKGPPGPVGANGSPGERGPL 1015
Query: 69 PPAGKAGL------ERPLRVWREGRLSGKGWRETPATTPKLLRARWRGHGGRLILGVAVG 122
PAG GL E P V G+ +G R P T K G
Sbjct: 1016 GPAGGIGLPGQSGSEGP--VGPAGKKGSRGERGPPGPTGK---------------DGIPG 1058
Query: 123 PIGCLLGPGEA----ETAHSGIREPPAARPRRGD 152
P+G L PG A E G P + +GD
Sbjct: 1059 PLGPLGPPGAAGPSGEEGDKGDVGAPGHKGSKGD 1092
Score = 35.8 bits (81), Expect = 0.018
Identities = 38/136 (27%), Positives = 49/136 (36%), Gaps = 8/136 (5%)
Query: 17 PPAASPSPRRWLSPLLGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAGL 76
P A P +R S +G G +G P+ PP GP G RGP G GL
Sbjct: 1303 PGAPGPPGKRGPSGHMGREGREGEKGAKGEPGPDGPPG---RTGPMGARGPPGRVGPEGL 1359
Query: 77 ER-PLRVWREGRLSGKGWRETPATTPKLLRARWRGHGGRLILGVAVGPIGCLLGPGEA-- 133
P V G L G P +G G +G IG + PGEA
Sbjct: 1360 RGIPGPVGEPGLLGAPGQMGPPGPLGPSGLPGLKGDTGPKGEKGHIGLIGLIGPPGEAGE 1419
Query: 134 --ETAHSGIREPPAAR 147
+ G++ PP +
Sbjct: 1420 KGDQGLPGVQGPPGPK 1435
Score = 31.2 bits (69), Expect = 0.44
Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 8/63 (12%)
Query: 13 GQLMPPAASPSPRRWLSPLLGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAG 72
G+ PP P P G G++G L PP PL GPAG+RG P G
Sbjct: 932 GERGPPGPPGPPGEQGLP--GLEGREGAKGEL------GPPGPLGKEGPAGLRGFPGPKG 983
Query: 73 KAG 75
G
Sbjct: 984 GPG 986
Score = 31.2 bits (69), Expect = 0.44
Identities = 35/129 (27%), Positives = 45/129 (34%), Gaps = 8/129 (6%)
Query: 13 GQLMPPAASPSPRRWLSPLLGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAG 72
GQ+ PP P L L G G +GH+ + PP G G+ G Q P G
Sbjct: 1376 GQMGPPG--PLGPSGLPGLKGDTGPKGEKGHIGLIGLIGPPGEAGEKGDQGLPGVQGPPG 1433
Query: 73 KAGLERPLRVWREGRLSGKGWRETPATTPKLLRARWRGHGGRLILGVAVGPIGCLLGPGE 132
G P G + G P L + +G G + GP G PG
Sbjct: 1434 PKGDPGP-----PGPIGSLGHPGPPGVAGPLGQKGSKGSPGSMGPRGDTGPAGPPGPPGA 1488
Query: 133 AETAHSGIR 141
H G+R
Sbjct: 1489 PAELH-GLR 1496
Score = 30.4 bits (67), Expect = 0.75
Identities = 34/114 (29%), Positives = 41/114 (35%), Gaps = 18/114 (15%)
Query: 32 LGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAGLERPLRVWREGRLSGK 91
LGF +G G + P+ + G G GP P G+ GL EGR K
Sbjct: 904 LGFQGQTGPPGPAGVLGPQGKTGEVGPLGERGPPGPPGPPGEQGLP-----GLEGREGAK 958
Query: 92 GWRETPATTPKLLRARWRGHGGRLILGVAVGPIGCLLGPGE-AETAHSGIREPP 144
G P K A RG GP G GPG+ T G + PP
Sbjct: 959 GELGPPGPLGKEGPAGLRGF---------PGPKG---GPGDPGPTGLKGDKGPP 1000
Score = 29.6 bits (65), Expect = 1.3
Identities = 36/121 (29%), Positives = 46/121 (38%), Gaps = 17/121 (14%)
Query: 33 GFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAGLERPL-RVWREGRLSGK 91
GF G +G P AP P G G GP+ AG+AG E P +G+L
Sbjct: 737 GFKGDVGLKGDQ--GKPGAPGP----RGEDGPEGPKGQAGQAGEEGPPGSAGEKGKLGVP 790
Query: 92 GWRETPATTPKLLRARWRGHGGRLILGVAVGPIGCLLGPGE-AETAHSGIREPPAARPRR 150
G P G G + +GPIG G+ + G R PP +R R
Sbjct: 791 GLPGYPGRP---------GPKGSIGFPGPLGPIGEKGKSGKTGQPGLEGERGPPGSRGER 841
Query: 151 G 151
G
Sbjct: 842 G 842
Score = 28.9 bits (63), Expect = 2.2
Identities = 26/86 (30%), Positives = 33/86 (38%), Gaps = 20/86 (23%)
Query: 12 RGQLMPP-----AASPSPRRWLSP-----------LLGFANGSGSEGHLCISPPEAPPPP 55
RG PP A P PR L P + G G++G+ + PP P PP
Sbjct: 583 RGAEGPPGPTGQAGEPGPRGLLGPRGSPGPTGRPGVTGIDGAPGAKGN--VGPPGEPGPP 640
Query: 56 LPAA--GPAGVRGPQPPAGKAGLERP 79
G G+ GPQ G G + P
Sbjct: 641 GQQGNHGSQGLPGPQGLIGTPGEKGP 666
Score = 27.7 bits (60), Expect = 4.8
Identities = 25/69 (36%), Positives = 28/69 (40%), Gaps = 6/69 (8%)
Query: 13 GQLMPP-AASPSPRRWLSPLLGFANGSGSEGHLCISPPEAPPPPLPA-AGPAGVRGPQPP 70
G L PP AA PS +G GS+G +A PP P GPAG GP
Sbjct: 1061 GPLGPPGAAGPSGEEGDKGDVGAPGHKGSKG----DKGDAGPPGQPGIRGPAGHPGPPGA 1116
Query: 71 AGKAGLERP 79
G G P
Sbjct: 1117 DGAQGRRGP 1125
Score = 27.3 bits (59), Expect = 6.3
Identities = 21/70 (30%), Positives = 26/70 (37%), Gaps = 11/70 (15%)
Query: 31 LLGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAGLERPLRVWREGRLSG 90
L G G GH + E P GP G++GP P G+ G + GR
Sbjct: 486 LTGRPGPVGLPGHPGLKGEEGAEGP---QGPRGLQGPHGPPGRVG--------KMGRPGA 534
Query: 91 KGWRETPATT 100
G R P T
Sbjct: 535 DGARGLPGDT 544
Score = 27.3 bits (59), Expect = 6.3
Identities = 31/101 (30%), Positives = 37/101 (36%), Gaps = 24/101 (23%)
Query: 18 PAASPSP--------RRWLSPLLGFANGSGSEGHL-CISPPEA---PPPP--------LP 57
PA P P RR L G G G + I PP P PP +
Sbjct: 1107 PAGHPGPPGADGAQGRRGPPGLFGQKGDDGVRGFVGVIGPPGLQGLPGPPGEKGEVGDVG 1166
Query: 58 AAGPAGVRGPQPPAGKAGLE----RPLRVWREGRLSGKGWR 94
+ GP G GP+ P G G E P V + G + KG R
Sbjct: 1167 SMGPHGAPGPRGPQGPTGSEGTPGLPGGVGQPGAVGEKGER 1207
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 40.0 bits (92), Expect = 0.001
Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 18 PAASPSPRRWLSPLLGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAGLE 77
PA SP R G A +G G P+ PP P G G +GPQ PAG+ GL+
Sbjct: 1085 PAGSPGER-------GPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGLQ 1137
Query: 78 RPL 80
P+
Sbjct: 1138 GPV 1140
Score = 33.1 bits (74), Expect = 0.12
Identities = 35/114 (30%), Positives = 43/114 (37%), Gaps = 7/114 (6%)
Query: 39 GSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAGLERPLRVWREGRLSGKGWRETPA 98
G G L + E PP P AG G RGP AG G+ P R +G G + P
Sbjct: 1066 GPVGALGLKGNEGPPGPPGPAGSPGERGPAGAAGPIGI--PGRPGPQGPPGPAGEKGAPG 1123
Query: 99 TTPKLLRARWRGHGGRLILGVAVGPIGCLLGPGEAETAHSGIREPPAARPRRGD 152
A G G + L GP+G PG E G P + +GD
Sbjct: 1124 EKGPQGPAGRDGLQGPVGLPGPAGPVG---PPG--EDGDKGEIGEPGQKGSKGD 1172
Score = 32.7 bits (73), Expect = 0.15
Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 13/60 (21%)
Query: 46 ISPP-----EAPPPPLPAAGPAGVRGPQPPAGKAGLERPLRVWREGRLSGKGWRETPATT 100
+ PP + P + GP GV+GP PAGK G R GR G R P T
Sbjct: 573 VGPPGSGGLKGEPGDVGPQGPRGVQGPPGPAGKPG--------RRGRAGSDGARGMPGQT 624
Score = 31.6 bits (70), Expect = 0.33
Identities = 31/105 (29%), Positives = 36/105 (34%), Gaps = 2/105 (1%)
Query: 28 LSPLLGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAGLERPLRVWREGR 87
L L G G G + P PP P +G G GPQ P G G+ P V +G
Sbjct: 1229 LQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGAPGADGPQGPPG--GIGNPGAVGEKGE 1286
Query: 88 LSGKGWRETPATTPKLLRARWRGHGGRLILGVAVGPIGCLLGPGE 132
G P RG G A GP G PG+
Sbjct: 1287 PGEAGEPGLPGEGGPPGPKGERGEKGESGPSGAAGPPGPKGPPGD 1331
Score = 31.2 bits (69), Expect = 0.44
Identities = 40/152 (26%), Positives = 47/152 (30%), Gaps = 10/152 (6%)
Query: 18 PAASPSPRRWLSPLLGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAGLE 77
P P P P G G G P P P +GP G RGP PAG G
Sbjct: 1349 PPGEPGPAGQDGPP-GDKGDDGEPGQTGSPGPTGEPGP---SGPPGKRGPPGPAGPEG-- 1402
Query: 78 RPLRVWREGRLSGKGWRETPATTPKLLRARWRGHGGRLILGVAVGPIGCLLGPGE-AETA 136
R +G G P T + G G L GP+G PG
Sbjct: 1403 ---RQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIPGPVGEQGLPGSPGPDG 1459
Query: 137 HSGIREPPAARPRRGDWEAHTAVSQPAAVALV 168
G PP +GD P + L+
Sbjct: 1460 PPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLI 1491
Score = 28.1 bits (61), Expect = 3.7
Identities = 14/44 (31%), Positives = 18/44 (40%)
Query: 33 GFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAGL 76
G G +G P P P+ GP+G G P G+ GL
Sbjct: 1165 GQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGADGEPGPRGQQGL 1208
Score = 27.7 bits (60), Expect = 4.8
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 6/53 (11%)
Query: 33 GFANGSGSEGHLCISPPEAPPPPLPAAGPAGVR------GPQPPAGKAGLERP 79
G + G +G S P PP P GP G + GP P G+AG P
Sbjct: 1510 GSSGPKGEQGITGPSGPIGPPGPPGLPGPPGPKGAKGSSGPTGPKGEAGHPGP 1562
Score = 26.9 bits (58), Expect = 8.3
Identities = 23/78 (29%), Positives = 26/78 (33%), Gaps = 21/78 (26%)
Query: 16 MPPAASPSPRRWLSPLLGFANGSGSEGHLCISPPEAPPPP-----------------LPA 58
MP P R L G G +GH P PP P LP
Sbjct: 620 MPGQTGPKGDRGFDGLAGL---PGEKGHRGDPGPSGPPGPPGDDGERGDDGEVGPRGLPG 676
Query: 59 -AGPAGVRGPQPPAGKAG 75
GP G+ GP+ P G G
Sbjct: 677 EPGPRGLLGPKGPPGPPG 694
Score = 26.9 bits (58), Expect = 8.3
Identities = 15/43 (34%), Positives = 16/43 (37%), Gaps = 6/43 (13%)
Query: 33 GFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAG 75
G G G PP GP GV GPQ P G+ G
Sbjct: 973 GLPGHPGQRGETGFQGKTGPP------GPPGVVGPQGPTGETG 1009
Score = 26.9 bits (58), Expect = 8.3
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 48 PPEAPPPPLP--AAGPAGVRGPQPPAGKAGLERP 79
PP P PP P A G +G GP+ AG G P
Sbjct: 1532 PPGLPGPPGPKGAKGSSGPTGPKGEAGHPGPPGP 1565
>gi|239753975 PREDICTED: hypothetical protein [Homo sapiens]
Length = 389
Score = 39.3 bits (90), Expect = 0.002
Identities = 45/158 (28%), Positives = 58/158 (36%), Gaps = 40/158 (25%)
Query: 12 RGQLMPPAASPSPR--RWLSPLLGFANGSGSEGHLCISPPEAPPPPLPAA---------G 60
R +PP SP+PR RW P +PP PP PAA
Sbjct: 151 RPYALPPRESPAPRPFRWGDPFSP-------------APPRPQPPSRPAAQPPSRPAFRS 197
Query: 61 PAGVRGPQP-----PAGKAGLERPLRVWREGRLSGKGWRETPATTPKLLRARWRGHGGRL 115
P VRGP P A G++ P R EG L G R P P+ RG GG L
Sbjct: 198 PRPVRGPHPRRAVVVAVLFGVQAPRRDVAEGGLRRDGRR--PGLAPQ------RGRGGLL 249
Query: 116 ILGVAVGPI---GCLLGPGEAETAHSGIREPPAARPRR 150
++ + + GP G+ P A+ +R
Sbjct: 250 LVVLHAATVQRPRLGRGPSRPPRGPVGVCRPQVAQRQR 287
>gi|169205117 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 38.9 bits (89), Expect = 0.002
Identities = 44/150 (29%), Positives = 57/150 (38%), Gaps = 20/150 (13%)
Query: 14 QLMPPAA-SPSPRRWLSPLLGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAG 72
QL+P AA P+ R L G +S A P P+P A P R P P G
Sbjct: 79 QLLPRAACGPAAGRELGVARAGRGIPSQVGRDGVSRTTAGPTPIPRA-PRPWRPPPPSPG 137
Query: 73 KAG------------LERPLRVWREG---RLSGKGWRETPATTP---KLLRARWRGHGGR 114
+ G + R L + R+ R+ G+ + TP ++L R RG G
Sbjct: 138 RVGVLLEVLPRSLLQIRRALALGRQRGSYRICANGFYKQSRKTPVCCRVLLVRARGKPGC 197
Query: 115 LILGVAVGPIGCLLGPGEAETAHSGIREPP 144
G A GP C LG G G PP
Sbjct: 198 SPRGGAAGPGACELGEGRRLPRAPGPSPPP 227
Score = 27.3 bits (59), Expect = 6.3
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 33 GFANGSGS----EGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGK 73
G A G G+ EG P PPPLPA+ A G PP G+
Sbjct: 201 GGAAGPGACELGEGRRLPRAPGPSPPPLPASADAA--GRLPPGGR 243
>gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens]
Length = 1712
Score = 38.9 bits (89), Expect = 0.002
Identities = 39/119 (32%), Positives = 41/119 (34%), Gaps = 13/119 (10%)
Query: 33 GFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAGLERPLRVWREGRLSGKG 92
GF G GH P P G G GPQ P G G P G KG
Sbjct: 112 GFPGADGIPGHPGQGGPRGRPGYDGCNGTQGDSGPQGPPGSEGFTGP-----PGPQGPKG 166
Query: 93 WRETPATTPKLLRARWRGHGGRLILGVAVGPIGCLLGPGEAETAHSGIREPPAARPRRG 151
+ P PK R R+RG G L GP G PG H G P A R G
Sbjct: 167 QKGEPYALPKEERDRYRGEPGEPGLVGFQGPPG---RPG-----HVGQMGPVGAPGRPG 217
Score = 28.9 bits (63), Expect = 2.2
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 11/55 (20%)
Query: 33 GFANGSGSEGHLCISPPEAPPPPLPAAGPAG----------VRGPQP-PAGKAGL 76
GF GS+G + + P+ P P+ GP G V G QP P G AG+
Sbjct: 735 GFIGPRGSKGAVGLPGPDGSPGPIGLPGPDGPPGERGLPGEVLGAQPGPRGDAGV 789
Score = 28.5 bits (62), Expect = 2.8
Identities = 39/137 (28%), Positives = 50/137 (36%), Gaps = 16/137 (11%)
Query: 16 MPPAASPSPRRWLSPLLGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAG 75
+P P+ + L + GFA G G + P +A P GP G GP+ G G
Sbjct: 691 LPGPPGPTGAKGLRGIPGFAGADGGPGPRGL-PGDAGREGFP--GPPGFIGPRGSKGAVG 747
Query: 76 LERPLRVWREGRLSGKGWRETPATTPKLLRARWRGHGGRLILGVAVGPIGCLLGPGE-AE 134
L P G + G P RG G +LG GP G PG+
Sbjct: 748 LPGP--DGSPGPIGLPGPDGPPGE---------RGLPGE-VLGAQPGPRGDAGVPGQPGL 795
Query: 135 TAHSGIREPPAARPRRG 151
G R PP R +G
Sbjct: 796 KGLPGDRGPPGFRGSQG 812
Score = 27.3 bits (59), Expect = 6.3
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 31 LLGFANGSGSEGHL-CISPPEAPPPPLPAAGPAGVRGPQPPAGKAGL 76
L+GF G GH+ + P AP P GP G GP+ G GL
Sbjct: 191 LVGFQGPPGRPGHVGQMGPVGAPGRP----GPPGPPGPKGQQGNRGL 233
>gi|169204928 PREDICTED: hypothetical protein [Homo sapiens]
Length = 215
Score = 37.7 bits (86), Expect = 0.005
Identities = 27/70 (38%), Positives = 28/70 (40%), Gaps = 16/70 (22%)
Query: 49 PEAPPPPLPAA----GPAGVRGPQPPAGKAGLERPLRVWREGRLSGKGWRETPATTPKLL 104
P PPPPLP A G VR QP AG GR G WR K L
Sbjct: 137 PPPPPPPLPPAPTRHGNTDVRASQPIAGC------------GRREGARWRGRGQRQAKAL 184
Query: 105 RARWRGHGGR 114
R R +G G R
Sbjct: 185 RGRKKGRGVR 194
>gi|169213235 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 37.7 bits (86), Expect = 0.005
Identities = 38/135 (28%), Positives = 50/135 (37%), Gaps = 4/135 (2%)
Query: 19 AASPSPRRWLSPLLGFANGS-GSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAGLE 77
AA + W P + G+ GS + +PP APPPP P GP+ P+
Sbjct: 37 AAGAGSKLWRRPRGAVSAGAPGSPLYRVSAPPPAPPPPPPPGGPSRSERPRAGLRPGAFV 96
Query: 78 RPLRVWREGRLSGK-GWRETPATTPKLLRARWRGHGGRLILGVAVGPIGCLLGPGEAETA 136
P + R SG+ G + L A RG R + A+ GP A
Sbjct: 97 SPGPLGRRASCSGRAGSAGRLRCSAAALSAAQRGGPARAQVPPALRTFS--PGPASPPRA 154
Query: 137 HSGIREPPAARPRRG 151
G R AR R G
Sbjct: 155 SPGGRPGSEARGRSG 169
>gi|113423861 PREDICTED: hypothetical protein [Homo sapiens]
Length = 215
Score = 37.7 bits (86), Expect = 0.005
Identities = 27/70 (38%), Positives = 28/70 (40%), Gaps = 16/70 (22%)
Query: 49 PEAPPPPLPAA----GPAGVRGPQPPAGKAGLERPLRVWREGRLSGKGWRETPATTPKLL 104
P PPPPLP A G VR QP AG GR G WR K L
Sbjct: 137 PPPPPPPLPPAPTRHGNTDVRASQPIAGC------------GRREGARWRGRGQRQAKAL 184
Query: 105 RARWRGHGGR 114
R R +G G R
Sbjct: 185 RGRKKGRGVR 194
>gi|169212744 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 37.7 bits (86), Expect = 0.005
Identities = 38/135 (28%), Positives = 50/135 (37%), Gaps = 4/135 (2%)
Query: 19 AASPSPRRWLSPLLGFANGS-GSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAGLE 77
AA + W P + G+ GS + +PP APPPP P GP+ P+
Sbjct: 37 AAGAGSKLWRRPRGAVSAGAPGSPLYRVSAPPPAPPPPPPPGGPSRSERPRAGLRPGAFV 96
Query: 78 RPLRVWREGRLSGK-GWRETPATTPKLLRARWRGHGGRLILGVAVGPIGCLLGPGEAETA 136
P + R SG+ G + L A RG R + A+ GP A
Sbjct: 97 SPGPLGRRASCSGRAGSAGRLRCSAAALSAAQRGGPARAQVPPALRTFS--PGPASPPRA 154
Query: 137 HSGIREPPAARPRRG 151
G R AR R G
Sbjct: 155 SPGGRPGSEARGRSG 169
>gi|113423437 PREDICTED: hypothetical protein [Homo sapiens]
Length = 215
Score = 37.7 bits (86), Expect = 0.005
Identities = 27/70 (38%), Positives = 28/70 (40%), Gaps = 16/70 (22%)
Query: 49 PEAPPPPLPAA----GPAGVRGPQPPAGKAGLERPLRVWREGRLSGKGWRETPATTPKLL 104
P PPPPLP A G VR QP AG GR G WR K L
Sbjct: 137 PPPPPPPLPPAPTRHGNTDVRASQPIAGC------------GRREGARWRGRGQRQAKAL 184
Query: 105 RARWRGHGGR 114
R R +G G R
Sbjct: 185 RGRKKGRGVR 194
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 37.4 bits (85), Expect = 0.006
Identities = 51/160 (31%), Positives = 58/160 (36%), Gaps = 20/160 (12%)
Query: 3 SPGYFIAVLRGQLMPPAASPSPRRWLSPLLGFANGSGSEGHLCISPPEAPPPPLPAAGPA 62
S GY G +P PS R L G G +G PP P P A+GP
Sbjct: 164 SYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAPGPQGFQG-----PPGEPGEP-GASGPM 217
Query: 63 GVRGPQPPAGKAGLE----RPLRVWREGRLSGKGWRETPATTPKLLRARWRGHGGRLILG 118
G RGP P GK G + +P R G +G R P T +GH G L
Sbjct: 218 GPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAG---LPGMKGHRGFSGLD 274
Query: 119 VA------VGPIGCLLGPGE-AETAHSGIREPPAARPRRG 151
A GP G PGE G R P R R G
Sbjct: 275 GAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPG 314
Score = 37.0 bits (84), Expect = 0.008
Identities = 40/141 (28%), Positives = 52/141 (36%), Gaps = 8/141 (5%)
Query: 13 GQLMPPAASPSPRRWLSPLLGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAG 72
G PP A +P +G A SG G + P P P+ A GPAG +GP+ G
Sbjct: 1040 GPAGPPGAPGAPGA--PGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKG 1097
Query: 73 KAGLERPLRVWREGRLSGKGWRETPATTPKLLRARWRGHGGRLILGVAVGPIGCLLGPG- 131
+ G + + SG P +P +G G GP G PG
Sbjct: 1098 ETGEQGDRGIKGHRGFSGLQGPPGPPGSP-----GEQGPSGASGPAGPRGPPGSAGAPGK 1152
Query: 132 EAETAHSGIREPPAARPRRGD 152
+ G PP R R GD
Sbjct: 1153 DGLNGLPGPIGPPGPRGRTGD 1173
Score = 32.7 bits (73), Expect = 0.15
Identities = 39/144 (27%), Positives = 47/144 (32%), Gaps = 18/144 (12%)
Query: 19 AASPSPRRWLSPLLGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAGLER 78
A P P P GF G++G P P + GP GVRG P G AG
Sbjct: 331 AGPPGPTGPAGPP-GFPGAVGAKGEA------GPQGPRGSEGPQGVRGEPGPPGPAGAAG 383
Query: 79 PL-RVWREGRLSGKGWRETPATTPKLLRARWRGHGGRLILGVAVGPIGCLLGPG------ 131
P +G+ KG P RG G G GP G PG
Sbjct: 384 PAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKG 443
Query: 132 ----EAETAHSGIREPPAARPRRG 151
+ E G++ PP G
Sbjct: 444 DTGAKGEPGPVGVQGPPGPAGEEG 467
Score = 32.7 bits (73), Expect = 0.15
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 35 ANGS-GSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAG 75
A+GS G +G ++ P PP P A G G GP PAG G
Sbjct: 753 ADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTG 794
Score = 32.0 bits (71), Expect = 0.26
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Query: 17 PPAASPSPRRWLSPLLGFANGSGSEGHLCISPPEAPPPPLPAAGPAG------VRGPQPP 70
P P R + ++GF G+ G + P P A GPAG +GP P
Sbjct: 565 PGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGP 624
Query: 71 AGKAG 75
AG AG
Sbjct: 625 AGPAG 629
Score = 31.6 bits (70), Expect = 0.33
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 33 GFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAGLE 77
G +G +G + + PP P AGPAG RG Q PAG G +
Sbjct: 605 GAVGPAGKDGE---AGAQGPPGP---AGPAGERGEQGPAGSPGFQ 643
Score = 31.2 bits (69), Expect = 0.44
Identities = 26/71 (36%), Positives = 30/71 (42%), Gaps = 7/71 (9%)
Query: 12 RGQLMPPAASPSPR----RWLSPLLGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRG- 66
RG P A SP R L+ +G +G+ G S P P P A G G RG
Sbjct: 745 RGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGE 804
Query: 67 --PQPPAGKAG 75
P PAG AG
Sbjct: 805 PGPPGPAGFAG 815
Score = 30.8 bits (68), Expect = 0.57
Identities = 27/86 (31%), Positives = 33/86 (38%), Gaps = 13/86 (15%)
Query: 12 RGQLMPPAASPSPRRWLSPLLGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPA 71
RG PP A+ GF +G G S PP P AG G +GP+
Sbjct: 865 RGSAGPPGAT-----------GFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGET 913
Query: 72 GKAGLERPLRVWREGRLSGKGWRETP 97
G AG RP V G G + +P
Sbjct: 914 GPAG--RPGEVGPPGPPGPAGEKGSP 937
Score = 30.4 bits (67), Expect = 0.75
Identities = 41/136 (30%), Positives = 44/136 (32%), Gaps = 9/136 (6%)
Query: 17 PPAASPSPRRWLSPLLGFANGSGSEGHLCISPPEAPPPPLP---AAGPAGVRGPQPPAGK 73
PP A P P G A G G + P PP P+ A G G RG P G
Sbjct: 816 PPGADGQPGAKGEP--GDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGA 873
Query: 74 AGLERPL-RVWREGRLSGKGWRETPATTPKLLRARWRGHGGRLILGVAVGPIGCLLGPGE 132
G RV G G P K RG G VGP G PG
Sbjct: 874 TGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPG---PPGP 930
Query: 133 AETAHSGIREPPAARP 148
A S + PA P
Sbjct: 931 AGEKGSPGADGPAGAP 946
Score = 30.0 bits (66), Expect = 0.97
Identities = 17/47 (36%), Positives = 19/47 (40%)
Query: 33 GFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAGLERP 79
G A G +G + P PP P G AG GP P G G P
Sbjct: 1145 GSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGP 1191
Score = 29.6 bits (65), Expect = 1.3
Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 6/69 (8%)
Query: 18 PAASPSPRRWLSPLLGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQ----PPA-- 71
P P +P L + S G + + P P P GP G GPQ PP
Sbjct: 149 PPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEP 208
Query: 72 GKAGLERPL 80
G+ G P+
Sbjct: 209 GEPGASGPM 217
Score = 29.3 bits (64), Expect = 1.7
Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 11/58 (18%)
Query: 18 PAASPSPRRWLSPLLGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAG 75
P A SP R SP G++G + P PP A G G GP PAGK+G
Sbjct: 1018 PGAEGSPGRDGSP--------GAKGDRGETGPAGPPG---APGAPGAPGPVGPAGKSG 1064
Score = 28.9 bits (63), Expect = 2.2
Identities = 15/49 (30%), Positives = 20/49 (40%)
Query: 31 LLGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAGLERP 79
++G G G + P P +G +G RGP P G GL P
Sbjct: 960 VVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGP 1008
Score = 28.5 bits (62), Expect = 2.8
Identities = 32/113 (28%), Positives = 40/113 (35%), Gaps = 20/113 (17%)
Query: 48 PPEAPPPPLPAAGPA--------GVRGPQPPAGKAGLERPLRVWREGRLSGKGWRETPAT 99
P P PP GP GV GP+ PAG+ G P G + +P
Sbjct: 477 PTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGP-----------AGPKGSPGE 525
Query: 100 TPKLLRARWRGHGGRLILGVAVGPIGCLLGPGEA-ETAHSGIREPPAARPRRG 151
+ A G G + GP G PG A + G PP AR + G
Sbjct: 526 AGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAG 578
Score = 28.1 bits (61), Expect = 3.7
Identities = 22/75 (29%), Positives = 27/75 (36%), Gaps = 6/75 (8%)
Query: 33 GFANGSGSEGHLCISPPEAPPPPLPAAGP------AGVRGPQPPAGKAGLERPLRVWREG 86
G +G+ G+ + PP P AGP G +G P G G E P V E
Sbjct: 314 GAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEP 373
Query: 87 RLSGKGWRETPATTP 101
G PA P
Sbjct: 374 GPPGPAGAAGPAGNP 388
Score = 28.1 bits (61), Expect = 3.7
Identities = 24/69 (34%), Positives = 28/69 (40%), Gaps = 7/69 (10%)
Query: 33 GFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAGLERPL-RVWREGRLSGK 91
GFA G++G P A P AG G GP PAG AG P+ V G +
Sbjct: 812 GFAGPPGADGQ-----PGAKGEP-GDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGAR 865
Query: 92 GWRETPATT 100
G P T
Sbjct: 866 GSAGPPGAT 874
Score = 26.9 bits (58), Expect = 8.3
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 7/62 (11%)
Query: 18 PAASPSPRRWLSPLLGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAGLE 77
PA SP G +G G + P L A GP+G RG + G+ G++
Sbjct: 636 PAGSPG-------FQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQ 688
Query: 78 RP 79
P
Sbjct: 689 GP 690
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 37.4 bits (85), Expect = 0.006
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 18 PAASPSPRRWLSPLLGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAGLE 77
P SP R G A +G G P+ PP P G G +GPQ PAG+ G++
Sbjct: 1067 PVGSPGER-------GSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQ 1119
Query: 78 RPL 80
P+
Sbjct: 1120 GPV 1122
Score = 33.5 bits (75), Expect = 0.088
Identities = 34/118 (28%), Positives = 43/118 (36%), Gaps = 3/118 (2%)
Query: 52 PPPPLPAAGPAGVRGPQPPAGKAGLERPLRVWREGRLSGKGWRETPATTPKLLRARWRGH 111
PP P AGP G G + P G AG E R +G G P T + G
Sbjct: 1358 PPGPSGEAGPPGPPGKRGPPGAAGAEG--RQGEKGAKGEAGAEGPPGKTGPVGPQGPAGK 1415
Query: 112 GGRLILGVAVGPIGCLLGPGEA-ETAHSGIREPPAARPRRGDWEAHTAVSQPAAVALV 168
G L GP+G PG A + G PP +GD + P + L+
Sbjct: 1416 PGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLI 1473
Score = 32.7 bits (73), Expect = 0.15
Identities = 18/48 (37%), Positives = 19/48 (39%)
Query: 28 LSPLLGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAG 75
L L G G G + P PP P GP G GPQ P G G
Sbjct: 1211 LQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVG 1258
Score = 32.0 bits (71), Expect = 0.26
Identities = 38/132 (28%), Positives = 44/132 (33%), Gaps = 17/132 (12%)
Query: 19 AASPSPRRWLSPL-----LGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGK 73
A P PR P G +G G S + PP GP G RGPQ P G
Sbjct: 885 AGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPP------GPPGERGPQGPQGP 938
Query: 74 AGLERPLRVWREGRLSGKGWRETPATTPKLLRARWRGHGGRLILGVAVGPIGCLLGPGE- 132
G P +G G P + ++G G G VGP G G
Sbjct: 939 VGFPGP-----KGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPI 993
Query: 133 AETAHSGIREPP 144
E H G PP
Sbjct: 994 GERGHPGPPGPP 1005
Score = 30.8 bits (68), Expect = 0.57
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 41 EGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAGLERPLRVWREGRLSGKGWRETPATT 100
E + + P P P GP G++GP P G G P R G L G P T
Sbjct: 447 EPGMLVEGPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGP--PGRPG-LPGADGLPGPPGT 503
Query: 101 PKLLRARWRGHGGR 114
+L R+ G G +
Sbjct: 504 MLMLPFRYGGDGSK 517
Score = 30.8 bits (68), Expect = 0.57
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 13 GQLMPPAASPSPRRWLSPLLGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAG 72
G+ PP A+ + R G +G+EG + P P P GP G+RG P G
Sbjct: 1372 GKRGPPGAAGAEGRQGEK--GAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVG 1429
Query: 73 KAGL 76
+ GL
Sbjct: 1430 EQGL 1433
Score = 30.0 bits (66), Expect = 0.97
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Query: 22 PSPRRWLSPLLGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAGLE---- 77
P P+ + P G G +G+ P+ P P GP G +GPQ G AGL
Sbjct: 687 PGPKGNMGPQ-GEPGPPGQQGN---PGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADG 742
Query: 78 RPLRVWREGRLSGKG 92
P +EG+ KG
Sbjct: 743 PPGHPGKEGQSGEKG 757
Score = 29.6 bits (65), Expect = 1.3
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 12 RGQLMPPAASPSPRRWLSPLLGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPA 71
RG L P +P + + G G +G++ PP GP G+ GPQ P
Sbjct: 663 RGLLGPRGTPGAPGQ--PGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPI 720
Query: 72 GKAGLERP 79
G G + P
Sbjct: 721 GPPGEKGP 728
Score = 29.6 bits (65), Expect = 1.3
Identities = 38/122 (31%), Positives = 44/122 (36%), Gaps = 19/122 (15%)
Query: 31 LLGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAGLERPLRVWREGRLSG 90
L G G +G P PP GP G RGPQ P G G + P G + G
Sbjct: 1211 LQGLPGPPGEKGENGDVGPMGPP------GPPGPRGPQGPNGADGPQGP--PGSVGSVGG 1262
Query: 91 KGWRETPATTPKLLRARWRGHGGRLILGVAVGPIGCLLGPGEAETAHSGIREPPAARPRR 150
G + P A G G +G GP G GEA G PP A+
Sbjct: 1263 VGEKGEPG------EAGNPGPPGEAGVG---GPKGERGEKGEA--GPPGAAGPPGAKGPP 1311
Query: 151 GD 152
GD
Sbjct: 1312 GD 1313
Score = 29.6 bits (65), Expect = 1.3
Identities = 17/47 (36%), Positives = 18/47 (38%)
Query: 33 GFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAGLERP 79
G GS G P PL GP G+ GPQ P G G P
Sbjct: 1486 GLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGP 1532
Score = 28.9 bits (63), Expect = 2.2
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 33 GFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAG 75
GF +G +G ++ P GP G RG + P GK G
Sbjct: 871 GFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPG 913
Score = 28.1 bits (61), Expect = 3.7
Identities = 22/65 (33%), Positives = 24/65 (36%), Gaps = 14/65 (21%)
Query: 33 GFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAGLERPLRVWREGRLSGKG 92
G G GS G S P GP GV+GP P GK G + GR G
Sbjct: 553 GPVGGPGSSGAKGESGDPGPQ------GPRGVQGPPGPTGKPG--------KRGRPGADG 598
Query: 93 WRETP 97
R P
Sbjct: 599 GRGMP 603
Score = 27.3 bits (59), Expect = 6.3
Identities = 14/44 (31%), Positives = 18/44 (40%)
Query: 32 LGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAG 75
+G G G + + P P AGP G GP AG+ G
Sbjct: 804 MGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKG 847
Score = 27.3 bits (59), Expect = 6.3
Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Query: 13 GQLMPPAASPSPRRWLSPLLGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAG 72
G+ PP P +R G G +G + E PP GP G G P G
Sbjct: 1363 GEAGPPG--PPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEG 1420
Query: 73 KAGLERPL 80
G+ P+
Sbjct: 1421 LRGIPGPV 1428
Score = 27.3 bits (59), Expect = 6.3
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 31 LLGFANGSGSEGHLCISPPEAP-----PPPLPAA-GPAGVRGPQPPAGKAG 75
L G G++G I P P PP LP GP G +G PAG+ G
Sbjct: 1487 LPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKG 1537
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 37.4 bits (85), Expect = 0.006
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 18 PAASPSPRRWLSPLLGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAGLE 77
P SP R G A +G G P+ PP P G G +GPQ PAG+ G++
Sbjct: 1016 PVGSPGER-------GSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQ 1068
Query: 78 RPL 80
P+
Sbjct: 1069 GPV 1071
Score = 33.5 bits (75), Expect = 0.088
Identities = 34/118 (28%), Positives = 43/118 (36%), Gaps = 3/118 (2%)
Query: 52 PPPPLPAAGPAGVRGPQPPAGKAGLERPLRVWREGRLSGKGWRETPATTPKLLRARWRGH 111
PP P AGP G G + P G AG E R +G G P T + G
Sbjct: 1307 PPGPSGEAGPPGPPGKRGPPGAAGAEG--RQGEKGAKGEAGAEGPPGKTGPVGPQGPAGK 1364
Query: 112 GGRLILGVAVGPIGCLLGPGEA-ETAHSGIREPPAARPRRGDWEAHTAVSQPAAVALV 168
G L GP+G PG A + G PP +GD + P + L+
Sbjct: 1365 PGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLI 1422
Score = 32.7 bits (73), Expect = 0.15
Identities = 18/48 (37%), Positives = 19/48 (39%)
Query: 28 LSPLLGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAG 75
L L G G G + P PP P GP G GPQ P G G
Sbjct: 1160 LQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVG 1207
Score = 32.0 bits (71), Expect = 0.26
Identities = 38/132 (28%), Positives = 44/132 (33%), Gaps = 17/132 (12%)
Query: 19 AASPSPRRWLSPL-----LGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGK 73
A P PR P G +G G S + PP GP G RGPQ P G
Sbjct: 834 AGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPP------GPPGERGPQGPQGP 887
Query: 74 AGLERPLRVWREGRLSGKGWRETPATTPKLLRARWRGHGGRLILGVAVGPIGCLLGPGE- 132
G P +G G P + ++G G G VGP G G
Sbjct: 888 VGFPGP-----KGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPI 942
Query: 133 AETAHSGIREPP 144
E H G PP
Sbjct: 943 GERGHPGPPGPP 954
Score = 30.8 bits (68), Expect = 0.57
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 41 EGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAGLERPLRVWREGRLSGKGWRETPATT 100
E + + P P P GP G++GP P G G P R G L G P T
Sbjct: 396 EPGMLVEGPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGP--PGRPG-LPGADGLPGPPGT 452
Query: 101 PKLLRARWRGHGGR 114
+L R+ G G +
Sbjct: 453 MLMLPFRYGGDGSK 466
Score = 30.8 bits (68), Expect = 0.57
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 13 GQLMPPAASPSPRRWLSPLLGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAG 72
G+ PP A+ + R G +G+EG + P P P GP G+RG P G
Sbjct: 1321 GKRGPPGAAGAEGRQGEK--GAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVG 1378
Query: 73 KAGL 76
+ GL
Sbjct: 1379 EQGL 1382
Score = 30.0 bits (66), Expect = 0.97
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Query: 22 PSPRRWLSPLLGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAGLE---- 77
P P+ + P G G +G+ P+ P P GP G +GPQ G AGL
Sbjct: 636 PGPKGNMGPQ-GEPGPPGQQGN---PGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADG 691
Query: 78 RPLRVWREGRLSGKG 92
P +EG+ KG
Sbjct: 692 PPGHPGKEGQSGEKG 706
Score = 29.6 bits (65), Expect = 1.3
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 12 RGQLMPPAASPSPRRWLSPLLGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPA 71
RG L P +P + + G G +G++ PP GP G+ GPQ P
Sbjct: 612 RGLLGPRGTPGAPGQ--PGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPI 669
Query: 72 GKAGLERP 79
G G + P
Sbjct: 670 GPPGEKGP 677
Score = 29.6 bits (65), Expect = 1.3
Identities = 38/122 (31%), Positives = 44/122 (36%), Gaps = 19/122 (15%)
Query: 31 LLGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAGLERPLRVWREGRLSG 90
L G G +G P PP GP G RGPQ P G G + P G + G
Sbjct: 1160 LQGLPGPPGEKGENGDVGPMGPP------GPPGPRGPQGPNGADGPQGP--PGSVGSVGG 1211
Query: 91 KGWRETPATTPKLLRARWRGHGGRLILGVAVGPIGCLLGPGEAETAHSGIREPPAARPRR 150
G + P A G G +G GP G GEA G PP A+
Sbjct: 1212 VGEKGEPG------EAGNPGPPGEAGVG---GPKGERGEKGEA--GPPGAAGPPGAKGPP 1260
Query: 151 GD 152
GD
Sbjct: 1261 GD 1262
Score = 29.6 bits (65), Expect = 1.3
Identities = 17/47 (36%), Positives = 18/47 (38%)
Query: 33 GFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAGLERP 79
G GS G P PL GP G+ GPQ P G G P
Sbjct: 1435 GLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGP 1481
Score = 28.9 bits (63), Expect = 2.2
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 33 GFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAG 75
GF +G +G ++ P GP G RG + P GK G
Sbjct: 820 GFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPG 862
Score = 28.1 bits (61), Expect = 3.7
Identities = 22/65 (33%), Positives = 24/65 (36%), Gaps = 14/65 (21%)
Query: 33 GFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAGLERPLRVWREGRLSGKG 92
G G GS G S P GP GV+GP P GK G + GR G
Sbjct: 502 GPVGGPGSSGAKGESGDPGPQ------GPRGVQGPPGPTGKPG--------KRGRPGADG 547
Query: 93 WRETP 97
R P
Sbjct: 548 GRGMP 552
Score = 27.3 bits (59), Expect = 6.3
Identities = 14/44 (31%), Positives = 18/44 (40%)
Query: 32 LGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAG 75
+G G G + + P P AGP G GP AG+ G
Sbjct: 753 MGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKG 796
Score = 27.3 bits (59), Expect = 6.3
Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Query: 13 GQLMPPAASPSPRRWLSPLLGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAG 72
G+ PP P +R G G +G + E PP GP G G P G
Sbjct: 1312 GEAGPPG--PPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEG 1369
Query: 73 KAGLERPL 80
G+ P+
Sbjct: 1370 LRGIPGPV 1377
Score = 27.3 bits (59), Expect = 6.3
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 31 LLGFANGSGSEGHLCISPPEAP-----PPPLPAA-GPAGVRGPQPPAGKAG 75
L G G++G I P P PP LP GP G +G PAG+ G
Sbjct: 1436 LPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKG 1486
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 37.4 bits (85), Expect = 0.006
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 18 PAASPSPRRWLSPLLGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAGLE 77
P SP R G A +G G P+ PP P G G +GPQ PAG+ G++
Sbjct: 1055 PVGSPGER-------GSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQ 1107
Query: 78 RPL 80
P+
Sbjct: 1108 GPV 1110
Score = 33.5 bits (75), Expect = 0.088
Identities = 34/118 (28%), Positives = 43/118 (36%), Gaps = 3/118 (2%)
Query: 52 PPPPLPAAGPAGVRGPQPPAGKAGLERPLRVWREGRLSGKGWRETPATTPKLLRARWRGH 111
PP P AGP G G + P G AG E R +G G P T + G
Sbjct: 1346 PPGPSGEAGPPGPPGKRGPPGAAGAEG--RQGEKGAKGEAGAEGPPGKTGPVGPQGPAGK 1403
Query: 112 GGRLILGVAVGPIGCLLGPGEA-ETAHSGIREPPAARPRRGDWEAHTAVSQPAAVALV 168
G L GP+G PG A + G PP +GD + P + L+
Sbjct: 1404 PGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLI 1461
Score = 32.7 bits (73), Expect = 0.15
Identities = 18/48 (37%), Positives = 19/48 (39%)
Query: 28 LSPLLGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAG 75
L L G G G + P PP P GP G GPQ P G G
Sbjct: 1199 LQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVG 1246
Score = 32.0 bits (71), Expect = 0.26
Identities = 38/132 (28%), Positives = 44/132 (33%), Gaps = 17/132 (12%)
Query: 19 AASPSPRRWLSPL-----LGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGK 73
A P PR P G +G G S + PP GP G RGPQ P G
Sbjct: 873 AGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPP------GPPGERGPQGPQGP 926
Query: 74 AGLERPLRVWREGRLSGKGWRETPATTPKLLRARWRGHGGRLILGVAVGPIGCLLGPGE- 132
G P +G G P + ++G G G VGP G G
Sbjct: 927 VGFPGP-----KGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPI 981
Query: 133 AETAHSGIREPP 144
E H G PP
Sbjct: 982 GERGHPGPPGPP 993
Score = 30.8 bits (68), Expect = 0.57
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 41 EGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAGLERPLRVWREGRLSGKGWRETPATT 100
E + + P P P GP G++GP P G G P R G L G P T
Sbjct: 435 EPGMLVEGPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGP--PGRPG-LPGADGLPGPPGT 491
Query: 101 PKLLRARWRGHGGR 114
+L R+ G G +
Sbjct: 492 MLMLPFRYGGDGSK 505
Score = 30.8 bits (68), Expect = 0.57
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 13 GQLMPPAASPSPRRWLSPLLGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAG 72
G+ PP A+ + R G +G+EG + P P P GP G+RG P G
Sbjct: 1360 GKRGPPGAAGAEGRQGEK--GAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVG 1417
Query: 73 KAGL 76
+ GL
Sbjct: 1418 EQGL 1421
Score = 30.0 bits (66), Expect = 0.97
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Query: 22 PSPRRWLSPLLGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAGLE---- 77
P P+ + P G G +G+ P+ P P GP G +GPQ G AGL
Sbjct: 675 PGPKGNMGPQ-GEPGPPGQQGN---PGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADG 730
Query: 78 RPLRVWREGRLSGKG 92
P +EG+ KG
Sbjct: 731 PPGHPGKEGQSGEKG 745
Score = 29.6 bits (65), Expect = 1.3
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 12 RGQLMPPAASPSPRRWLSPLLGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPA 71
RG L P +P + + G G +G++ PP GP G+ GPQ P
Sbjct: 651 RGLLGPRGTPGAPGQ--PGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPI 708
Query: 72 GKAGLERP 79
G G + P
Sbjct: 709 GPPGEKGP 716
Score = 29.6 bits (65), Expect = 1.3
Identities = 38/122 (31%), Positives = 44/122 (36%), Gaps = 19/122 (15%)
Query: 31 LLGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAGLERPLRVWREGRLSG 90
L G G +G P PP GP G RGPQ P G G + P G + G
Sbjct: 1199 LQGLPGPPGEKGENGDVGPMGPP------GPPGPRGPQGPNGADGPQGP--PGSVGSVGG 1250
Query: 91 KGWRETPATTPKLLRARWRGHGGRLILGVAVGPIGCLLGPGEAETAHSGIREPPAARPRR 150
G + P A G G +G GP G GEA G PP A+
Sbjct: 1251 VGEKGEPG------EAGNPGPPGEAGVG---GPKGERGEKGEA--GPPGAAGPPGAKGPP 1299
Query: 151 GD 152
GD
Sbjct: 1300 GD 1301
Score = 29.6 bits (65), Expect = 1.3
Identities = 17/47 (36%), Positives = 18/47 (38%)
Query: 33 GFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAGLERP 79
G GS G P PL GP G+ GPQ P G G P
Sbjct: 1474 GLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGP 1520
Score = 28.9 bits (63), Expect = 2.2
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 33 GFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAG 75
GF +G +G ++ P GP G RG + P GK G
Sbjct: 859 GFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPG 901
Score = 28.1 bits (61), Expect = 3.7
Identities = 22/65 (33%), Positives = 24/65 (36%), Gaps = 14/65 (21%)
Query: 33 GFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAGLERPLRVWREGRLSGKG 92
G G GS G S P GP GV+GP P GK G + GR G
Sbjct: 541 GPVGGPGSSGAKGESGDPGPQ------GPRGVQGPPGPTGKPG--------KRGRPGADG 586
Query: 93 WRETP 97
R P
Sbjct: 587 GRGMP 591
Score = 27.3 bits (59), Expect = 6.3
Identities = 14/44 (31%), Positives = 18/44 (40%)
Query: 32 LGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAG 75
+G G G + + P P AGP G GP AG+ G
Sbjct: 792 MGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKG 835
Score = 27.3 bits (59), Expect = 6.3
Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Query: 13 GQLMPPAASPSPRRWLSPLLGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAG 72
G+ PP P +R G G +G + E PP GP G G P G
Sbjct: 1351 GEAGPPG--PPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEG 1408
Query: 73 KAGLERPL 80
G+ P+
Sbjct: 1409 LRGIPGPV 1416
Score = 27.3 bits (59), Expect = 6.3
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 31 LLGFANGSGSEGHLCISPPEAP-----PPPLPAA-GPAGVRGPQPPAGKAG 75
L G G++G I P P PP LP GP G +G PAG+ G
Sbjct: 1475 LPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKG 1525
>gi|239750914 PREDICTED: hypothetical protein XP_002347614 [Homo
sapiens]
Length = 492
Score = 37.4 bits (85), Expect = 0.006
Identities = 39/128 (30%), Positives = 43/128 (33%), Gaps = 15/128 (11%)
Query: 12 RGQLMPPAASPSPRRWLSPLLGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPA 71
R + A P RRW PL +G+ P AP PPLP PA V A
Sbjct: 367 RADVTAGRARPRRRRW-EPLRAQRSGAR---------PGAPAPPLPCLPPAAVCHALAGA 416
Query: 72 GKAGLERPLRVWREGRLSGKGWRETPATTPKLLRARW-----RGHGGRLILGVAVGPIGC 126
G G L + RL G P P RW G G L V V
Sbjct: 417 GAPGGRLELGLSPGTRLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTGLFDLSVGVSAASS 476
Query: 127 LLGPGEAE 134
LG E E
Sbjct: 477 SLGSTELE 484
>gi|239745312 PREDICTED: hypothetical protein XP_002343435 [Homo
sapiens]
Length = 492
Score = 37.4 bits (85), Expect = 0.006
Identities = 39/128 (30%), Positives = 43/128 (33%), Gaps = 15/128 (11%)
Query: 12 RGQLMPPAASPSPRRWLSPLLGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPA 71
R + A P RRW PL +G+ P AP PPLP PA V A
Sbjct: 367 RADVTAGRARPRRRRW-EPLRAQRSGAR---------PGAPAPPLPCLPPAAVCHALAGA 416
Query: 72 GKAGLERPLRVWREGRLSGKGWRETPATTPKLLRARW-----RGHGGRLILGVAVGPIGC 126
G G L + RL G P P RW G G L V V
Sbjct: 417 GAPGGRLELGLSPGTRLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTGLFDLSVGVSAASS 476
Query: 127 LLGPGEAE 134
LG E E
Sbjct: 477 SLGSTELE 484
>gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor
[Homo sapiens]
Length = 1336
Score = 37.4 bits (85), Expect = 0.006
Identities = 44/134 (32%), Positives = 52/134 (38%), Gaps = 22/134 (16%)
Query: 24 PRRWLSPLLGFANGSGSEGHLCISPPEAPPPPLPAAGPA-GVRGPQPPAGKAGLERPLRV 82
P + LL F+ G S +PP A PPP P P+ P+P G A V
Sbjct: 879 PTHRMDFLLAFSRGMYSCCSAEAAPPPAKPPPPPQPLPSPAYPAPRPAPGPAPF-----V 933
Query: 83 WREGRLSGKGWRETPATTPK----LLRARWRGHGGRLILGVAVGPIGCLLGPGEAETAHS 138
RE R S WR T P L R +G + P G LG GEA A
Sbjct: 934 PRE-RASVDRWRRTKGAGPPGGAGLADGFHRYYG-------PIEPQGLGLGLGEARAAPR 985
Query: 139 GIR----EPPAARP 148
G PPAA+P
Sbjct: 986 GAAGRPLSPPAAQP 999
Score = 28.1 bits (61), Expect = 3.7
Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 7/47 (14%)
Query: 22 PSPRRW------LSPLLG-FANGSGSEGHLCISPPEAPPPPLPAAGP 61
P+P RW PLLG A G+G G P APPP A P
Sbjct: 1056 PAPARWPRSDPESQPLLGPGAGGAGGTGGAGGGAPAAPPPCRAAPPP 1102
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 37.0 bits (84), Expect = 0.008
Identities = 29/95 (30%), Positives = 37/95 (38%), Gaps = 16/95 (16%)
Query: 15 LMPPAASPSPRRWLSPLLGFANGSGSEGHLCISPPEAPPPPLPAAGPA------------ 62
+ PPA++P +L PL+G A +PP PPPP A PA
Sbjct: 751 MAPPASAPP--EFLDPLMGAAAPQYPGRGPPPAPPPPPPPPRAPADPAASPDPPSAVASP 808
Query: 63 --GVRGPQPPAGKAGLERPLRVWREGRLSGKGWRE 95
G+ P P G +G E EG G G E
Sbjct: 809 GSGLSSPGPKPGDSGYETETPFSPEGAFPGGGAAE 843
>gi|119395760 diaphanous 1 isoform 2 [Homo sapiens]
Length = 1263
Score = 36.6 bits (83), Expect = 0.010
Identities = 26/77 (33%), Positives = 31/77 (40%), Gaps = 13/77 (16%)
Query: 11 LRGQLMPPAASPSPRRWLSPLLGFANGSGSEGHLCISPP-------EAPPPPLPAAGPAG 63
L G P P P +G + S G I PP PPPP P G AG
Sbjct: 636 LSGDATIPPPPPLPEG-----VGIPSPSSLPGGTAIPPPPPLPGSARIPPPPPPLPGSAG 690
Query: 64 VRGPQPP-AGKAGLERP 79
+ P PP G+AG+ P
Sbjct: 691 IPPPPPPLPGEAGMPPP 707
Score = 29.3 bits (64), Expect = 1.7
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 52 PPPPLPAAGPAGVRGPQPP-AGKAGLERP 79
PPPP P G AG+ P PP G G+ P
Sbjct: 692 PPPPPPLPGEAGMPPPPPPLPGGPGIPPP 720
Score = 28.9 bits (63), Expect = 2.2
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 48 PPEAPPPPLPAAGPAGVRGPQPPAGKAG 75
PP PPPP P P GV PP+ G
Sbjct: 600 PPPPPPPPPPPPLPGGVCISSPPSLPGG 627
Score = 28.5 bits (62), Expect = 2.8
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 48 PPEA--PPPPLPAAGPAGVRGPQPPAGKAGLERP 79
P EA PPPP P G G+ P P G G+ P
Sbjct: 699 PGEAGMPPPPPPLPGGPGIPPPPPFPGGPGIPPP 732
>gi|119395758 diaphanous 1 isoform 1 [Homo sapiens]
Length = 1272
Score = 36.6 bits (83), Expect = 0.010
Identities = 26/77 (33%), Positives = 31/77 (40%), Gaps = 13/77 (16%)
Query: 11 LRGQLMPPAASPSPRRWLSPLLGFANGSGSEGHLCISPP-------EAPPPPLPAAGPAG 63
L G P P P +G + S G I PP PPPP P G AG
Sbjct: 645 LSGDATIPPPPPLPEG-----VGIPSPSSLPGGTAIPPPPPLPGSARIPPPPPPLPGSAG 699
Query: 64 VRGPQPP-AGKAGLERP 79
+ P PP G+AG+ P
Sbjct: 700 IPPPPPPLPGEAGMPPP 716
Score = 29.3 bits (64), Expect = 1.7
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 52 PPPPLPAAGPAGVRGPQPP-AGKAGLERP 79
PPPP P G AG+ P PP G G+ P
Sbjct: 701 PPPPPPLPGEAGMPPPPPPLPGGPGIPPP 729
Score = 28.9 bits (63), Expect = 2.2
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 48 PPEAPPPPLPAAGPAGVRGPQPPAGKAG 75
PP PPPP P P GV PP+ G
Sbjct: 609 PPPPPPPPPPPPLPGGVCISSPPSLPGG 636
Score = 28.5 bits (62), Expect = 2.8
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 48 PPEA--PPPPLPAAGPAGVRGPQPPAGKAGLERP 79
P EA PPPP P G G+ P P G G+ P
Sbjct: 708 PGEAGMPPPPPPLPGGPGIPPPPPFPGGPGIPPP 741
>gi|145309324 FH2 domain containing 1 [Homo sapiens]
Length = 1143
Score = 36.6 bits (83), Expect = 0.010
Identities = 27/70 (38%), Positives = 29/70 (41%), Gaps = 12/70 (17%)
Query: 3 SPGYFIAVLRGQLMPPAASPSPRRWLSPLLGFANGSGSEGHLCISPPEAPPPPLPAAGPA 62
+PG+ I GQ PPA P P P S S SPP PPPPLP P
Sbjct: 21 APGFMI----GQTPPPAPPPPP----PPPPPSPPCSCSREECPSSPPPPPPPPLPGEPPI 72
Query: 63 GVRGPQPPAG 72
P PP G
Sbjct: 73 ----PPPPPG 78
>gi|13994280 C1q and tumor necrosis factor related protein 7 isoform
b [Homo sapiens]
Length = 289
Score = 36.2 bits (82), Expect = 0.014
Identities = 37/113 (32%), Positives = 44/113 (38%), Gaps = 12/113 (10%)
Query: 40 SEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAGLERPLRVWREGRLSGKGWRETPAT 99
S ++C S P P PP GP G G P G+ GL P R R+GR KG + T
Sbjct: 29 SPRYIC-SIPGLPGPP----GPPGANGSPGPHGRIGL--PGRDGRDGRKGEKGEKGTAGL 81
Query: 100 TPKLLRARWRGHGGRLILGVAVGPIGCLLGPGEAETAHSGIREPPAARPRRGD 152
K G G GPIG E E G PP + RG+
Sbjct: 82 RGKTGPLGLAGEKGDQGETGKKGPIG-----PEGEKGEVGPIGPPGPKGDRGE 129
>gi|206597454 C1q and tumor necrosis factor related protein 7
isoform b [Homo sapiens]
Length = 289
Score = 36.2 bits (82), Expect = 0.014
Identities = 37/113 (32%), Positives = 44/113 (38%), Gaps = 12/113 (10%)
Query: 40 SEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAGLERPLRVWREGRLSGKGWRETPAT 99
S ++C S P P PP GP G G P G+ GL P R R+GR KG + T
Sbjct: 29 SPRYIC-SIPGLPGPP----GPPGANGSPGPHGRIGL--PGRDGRDGRKGEKGEKGTAGL 81
Query: 100 TPKLLRARWRGHGGRLILGVAVGPIGCLLGPGEAETAHSGIREPPAARPRRGD 152
K G G GPIG E E G PP + RG+
Sbjct: 82 RGKTGPLGLAGEKGDQGETGKKGPIG-----PEGEKGEVGPIGPPGPKGDRGE 129
>gi|206597452 C1q and tumor necrosis factor related protein 7
isoform a [Homo sapiens]
Length = 296
Score = 36.2 bits (82), Expect = 0.014
Identities = 37/113 (32%), Positives = 44/113 (38%), Gaps = 12/113 (10%)
Query: 40 SEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAGKAGLERPLRVWREGRLSGKGWRETPAT 99
S ++C S P P PP GP G G P G+ GL P R R+GR KG + T
Sbjct: 36 SPRYIC-SIPGLPGPP----GPPGANGSPGPHGRIGL--PGRDGRDGRKGEKGEKGTAGL 88
Query: 100 TPKLLRARWRGHGGRLILGVAVGPIGCLLGPGEAETAHSGIREPPAARPRRGD 152
K G G GPIG E E G PP + RG+
Sbjct: 89 RGKTGPLGLAGEKGDQGETGKKGPIG-----PEGEKGEVGPIGPPGPKGDRGE 136
>gi|117938310 sine oculis binding protein homolog [Homo sapiens]
Length = 873
Score = 36.2 bits (82), Expect = 0.014
Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 10/69 (14%)
Query: 13 GQLMPPAAS-PSPRRWLSP--------LLGFANGSGSEGHLCISPP-EAPPPPLPAAGPA 62
G PPAA P P P ++ G+ +EG PP E PPPP P A P
Sbjct: 696 GHCSPPAAGDPGPGAPAGPEAAAACNVIVNGTRGAAAEGAKSAEPPPEQPPPPPPPAPPK 755
Query: 63 GVRGPQPPA 71
+ P+ PA
Sbjct: 756 KLLSPEEPA 764
>gi|4885407 hyperpolarization activated cyclic nucleotide-gated
potassium channel 4 [Homo sapiens]
Length = 1203
Score = 35.8 bits (81), Expect = 0.018
Identities = 20/44 (45%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 12 RGQLMPPAASPSPRRWLSPLLGFANGSGSEGHLCISPPEAPPPP 55
RG L PP SP P R A SGS G L + P +PPPP
Sbjct: 1022 RGGLSPPGHSPGPPRTFPSAPPRA--SGSHGSLLLPPASSPPPP 1063
Score = 28.9 bits (63), Expect = 2.2
Identities = 36/117 (30%), Positives = 42/117 (35%), Gaps = 23/117 (19%)
Query: 15 LMPPAASPSPRRWLSPL--------LGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRG 66
L PP +S SP L LG A G S +PP P PP AG +G
Sbjct: 959 LPPPPSSRSPSSSPGQLGQPPGELSLGLATGPLSTPE---TPPRQPEPPSLVAGASGGAS 1015
Query: 67 PQPPAGKAGLERPLRVWREGRLSGKGWRETPATTPKLLRARWRGHGGRLILGVAVGP 123
P + GL P G G R P+ P R G G L+L A P
Sbjct: 1016 PVGFTPRGGLSPP------GHSPGPP-RTFPSAPP-----RASGSHGSLLLPPASSP 1060
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.139 0.457
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,476,929
Number of Sequences: 37866
Number of extensions: 723008
Number of successful extensions: 12522
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 591
Number of HSP's that attempted gapping in prelim test: 6514
Number of HSP's gapped (non-prelim): 4874
length of query: 168
length of database: 18,247,518
effective HSP length: 95
effective length of query: 73
effective length of database: 14,650,248
effective search space: 1069468104
effective search space used: 1069468104
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.