Guide to the Human Genome
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Name: SIGLEC9 Sequence: fasta or formatted (463aa) NCBI GI: 23943856
Description:

sialic acid binding Ig-like lectin 9

Referenced in:

Lectin Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         32           2
 C cysteine            2.6         12           1
 D aspartate           3.9         18           1
 E glutamate           4.3         20           2
 F phenylalanine       2.6         12           2
 G glycine             8.0         37           2
 H histidine           2.6         12           2
 I isoleucine          2.6         12           1
 K lysine              2.4         11           2
 L leucine             9.5         44           5
 M methionine          1.3          6           1
 N asparagine          3.7         17           2
 P proline             8.2         38           3
 Q glutamine           5.0         23           2
 R arginine            5.6         26           2
 S serine             10.4         48           2
 T threonine           7.8         36           2
 V valine              8.4         39           3
 W tryptophan          2.4         11           1
 Y tyrosine            1.9          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sialic acid binding Ig-like lectin 9 
SIGLEC7               0.702   sialic acid binding Ig-like lectin 7 isoform 1 
SIGLEC8               0.653   sialic acid binding Ig-like lectin 8 
SIGLEC12              0.619   sialic acid binding immunoglobulin-like lectin-like ...
SIGLEC12              0.615   sialic acid binding immunoglobulin-like lectin-like ...
SIGLEC6               0.402   sialic acid binding Ig-like lectin 6 isoform 1 prec...
SIGLEC6               0.372   sialic acid binding Ig-like lectin 6 isoform 2 prec...
SIGLEC6               0.344   sialic acid binding Ig-like lectin 6 isoform 3 prec...
SIGLEC14              0.343   sialic acid binding Ig-like lectin 14 
SIGLEC5               0.315   sialic acid binding Ig-like lectin 5 
CD33                  0.294   CD33 antigen isoform 1 precursor 
SIGLEC7               0.291   sialic acid binding Ig-like lectin 7 isoform 2 [Hom...
SIGLEC10              0.255   sialic acid binding Ig-like lectin 10 
SIGLEC11              0.242   sialic acid binding Ig-like lectin 11 isoform 2 [Ho...
SIGLEC11              0.242   sialic acid binding Ig-like lectin 11 isoform 1 [Ho...
CD33                  0.138   CD33 antigen isoform 2 precursor 
MAG                   0.101   myelin associated glycoprotein isoform a precursor [...
MAG                   0.101   myelin associated glycoprotein isoform b precursor [...
SIGLEC1               0.076   sialoadhesin precursor 
CD22                  0.070   CD22 molecule 
HSPG2                 0.023   heparan sulfate proteoglycan 2 
MDGA1                 0.022   MAM domain containing glycosylphosphatidylinositol a...
PXDN                  0.019   peroxidasin 
VCAM1                 0.018   vascular cell adhesion molecule 1 isoform b precurso...
VCAM1                 0.018   vascular cell adhesion molecule 1 isoform a precursor...
PVRL1                 0.018   poliovirus receptor-related 1 isoform 2 
LOC100292387          0.017   PREDICTED: similar to hemicentin 2 
HMCN2                 0.017   PREDICTED: hemicentin 2 
LOC100289200          0.017   PREDICTED: hypothetical protein XP_002342997 
MDGA2                 0.017   MAM domain containing 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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