Guide to the Human Genome
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Name: SIGLEC11 Sequence: fasta or formatted (698aa) NCBI GI: 205830470
Description:

sialic acid binding Ig-like lectin 11 isoform 1

Referenced in:

Lectin Families

Other entries for this name:
alt prot [602aa] sialic acid binding Ig-like lectin 11 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         50           3
 C cysteine            2.6         18           1
 D aspartate           3.2         22           1
 E glutamate           5.7         40           2
 F phenylalanine       3.0         21           2
 G glycine             8.9         62           3
 H histidine           3.0         21           1
 I isoleucine          1.9         13           2
 K lysine              2.9         20           2
 L leucine            11.3         79           3
 M methionine          1.0          7           1
 N asparagine          2.3         16           2
 P proline             8.2         57           3
 Q glutamine           6.0         42           3
 R arginine            6.0         42           2
 S serine             11.2         78           3
 T threonine           4.9         34           2
 V valine              6.7         47           2
 W tryptophan          2.1         15           2
 Y tyrosine            2.0         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sialic acid binding Ig-like lectin 11 isoform 1 [Ho... 
SIGLEC10              0.659   sialic acid binding Ig-like lectin 10 
SIGLEC11              0.642   sialic acid binding Ig-like lectin 11 isoform 2 [Ho...
SIGLEC5               0.214   sialic acid binding Ig-like lectin 5 
SIGLEC14              0.176   sialic acid binding Ig-like lectin 14 
SIGLEC8               0.175   sialic acid binding Ig-like lectin 8 
SIGLEC7               0.170   sialic acid binding Ig-like lectin 7 isoform 1 
SIGLEC9               0.160   sialic acid binding Ig-like lectin 9 
SIGLEC6               0.158   sialic acid binding Ig-like lectin 6 isoform 1 prec...
SIGLEC6               0.155   sialic acid binding Ig-like lectin 6 isoform 3 prec...
SIGLEC12              0.152   sialic acid binding immunoglobulin-like lectin-like ...
SIGLEC12              0.152   sialic acid binding immunoglobulin-like lectin-like ...
SIGLEC6               0.142   sialic acid binding Ig-like lectin 6 isoform 2 prec...
CD33                  0.134   CD33 antigen isoform 1 precursor 
MAG                   0.104   myelin associated glycoprotein isoform a precursor [...
MAG                   0.104   myelin associated glycoprotein isoform b precursor [...
SIGLEC7               0.076   sialic acid binding Ig-like lectin 7 isoform 2 [Hom...
SIGLEC1               0.059   sialoadhesin precursor 
CD33                  0.050   CD33 antigen isoform 2 precursor 
CD22                  0.050   CD22 molecule 
HMCN2                 0.048   PREDICTED: hemicentin 2 
HMCN2                 0.048   PREDICTED: hemicentin 2 
HMCN2                 0.048   PREDICTED: hemicentin 2 
HMCN1                 0.044   hemicentin 1 
FLJ40235              0.042   hypothetical protein LOC284369 
LOC100292387          0.041   PREDICTED: similar to hemicentin 2 
NCAM1                 0.041   neural cell adhesion molecule 1 isoform 1 
NCAM1                 0.041   neural cell adhesion molecule 1 isoform 3 
PXDN                  0.041   peroxidasin 
HSPG2                 0.039   heparan sulfate proteoglycan 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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