Guide to the Human Genome
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Name: SIGLEC6 Sequence: fasta or formatted (353aa) NCBI GI: 193794817
Description:

sialic acid binding Ig-like lectin 6 isoform 3 precursor

Referenced in:

Lectin Families

Other entries for this name:
alt prot [437aa] sialic acid binding Ig-like lectin 6 isoform 2 precursor
alt prot [453aa] sialic acid binding Ig-like lectin 6 isoform 1 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         28           2
 C cysteine            2.5          9           1
 D aspartate           3.1         11           1
 E glutamate           5.1         18           2
 F phenylalanine       4.0         14           2
 G glycine             6.5         23           1
 H histidine           2.3          8           1
 I isoleucine          3.1         11           1
 K lysine              2.0          7           1
 L leucine            11.3         40           3
 M methionine          1.7          6           1
 N asparagine          3.4         12           1
 P proline             9.1         32           2
 Q glutamine           5.4         19           1
 R arginine            5.9         21           3
 S serine              9.6         34           2
 T threonine           6.8         24           2
 V valine              5.7         20           1
 W tryptophan          2.3          8           1
 Y tyrosine            2.3          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sialic acid binding Ig-like lectin 6 isoform 3 prec... 
SIGLEC6               0.953   sialic acid binding Ig-like lectin 6 isoform 1 prec...
SIGLEC6               0.893   sialic acid binding Ig-like lectin 6 isoform 2 prec...
SIGLEC5               0.489   sialic acid binding Ig-like lectin 5 
SIGLEC12              0.489   sialic acid binding immunoglobulin-like lectin-like ...
SIGLEC12              0.482   sialic acid binding immunoglobulin-like lectin-like ...
SIGLEC7               0.455   sialic acid binding Ig-like lectin 7 isoform 1 
SIGLEC9               0.455   sialic acid binding Ig-like lectin 9 
SIGLEC8               0.448   sialic acid binding Ig-like lectin 8 
SIGLEC14              0.441   sialic acid binding Ig-like lectin 14 
CD33                  0.425   CD33 antigen isoform 1 precursor 
SIGLEC10              0.324   sialic acid binding Ig-like lectin 10 
SIGLEC11              0.312   sialic acid binding Ig-like lectin 11 isoform 2 [Ho...
SIGLEC11              0.312   sialic acid binding Ig-like lectin 11 isoform 1 [Ho...
CD33                  0.215   CD33 antigen isoform 2 precursor 
SIGLEC7               0.128   sialic acid binding Ig-like lectin 7 isoform 2 [Hom...
MAG                   0.119   myelin associated glycoprotein isoform a precursor [...
MAG                   0.119   myelin associated glycoprotein isoform b precursor [...
SIGLEC1               0.105   sialoadhesin precursor 
CD22                  0.077   CD22 molecule 
PXDN                  0.044   peroxidasin 
CEACAM6               0.043   carcinoembryonic antigen-related cell adhesion molec...
NFASC                 0.038   neurofascin isoform 6 precursor 
NFASC                 0.038   neurofascin isoform 5 precursor 
NFASC                 0.038   neurofascin isoform 1 precursor 
BOC                   0.037   brother of CDO 
L1CAM                 0.036   L1 cell adhesion molecule isoform 3 precursor [Homo...
L1CAM                 0.036   L1 cell adhesion molecule isoform 2 precursor 
L1CAM                 0.036   L1 cell adhesion molecule isoform 1 precursor 
CEACAM5               0.036   carcinoembryonic antigen-related cell adhesion molec...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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