Guide to the Human Genome
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Name: SIGLEC6 Sequence: fasta or formatted (437aa) NCBI GI: 193794819
Description:

sialic acid binding Ig-like lectin 6 isoform 2 precursor

Referenced in:

Lectin Families

Other entries for this name:
alt prot [353aa] sialic acid binding Ig-like lectin 6 isoform 3 precursor
alt prot [453aa] sialic acid binding Ig-like lectin 6 isoform 1 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         31           2
 C cysteine            2.3         10           1
 D aspartate           3.4         15           2
 E glutamate           5.9         26           2
 F phenylalanine       3.9         17           2
 G glycine             7.1         31           2
 H histidine           3.2         14           1
 I isoleucine          3.4         15           1
 K lysine              3.2         14           2
 L leucine            10.3         45           3
 M methionine          1.6          7           1
 N asparagine          3.0         13           1
 P proline             7.8         34           2
 Q glutamine           5.7         25           1
 R arginine            5.5         24           3
 S serine              8.2         36           2
 T threonine           7.1         31           2
 V valine              7.1         31           1
 W tryptophan          2.1          9           1
 Y tyrosine            2.1          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sialic acid binding Ig-like lectin 6 isoform 2 prec... 
SIGLEC6               0.986   sialic acid binding Ig-like lectin 6 isoform 1 prec...
SIGLEC6               0.718   sialic acid binding Ig-like lectin 6 isoform 3 prec...
SIGLEC12              0.423   sialic acid binding immunoglobulin-like lectin-like ...
SIGLEC12              0.417   sialic acid binding immunoglobulin-like lectin-like ...
SIGLEC8               0.409   sialic acid binding Ig-like lectin 8 
SIGLEC7               0.405   sialic acid binding Ig-like lectin 7 isoform 1 
SIGLEC9               0.395   sialic acid binding Ig-like lectin 9 
SIGLEC5               0.375   sialic acid binding Ig-like lectin 5 
CD33                  0.327   CD33 antigen isoform 1 precursor 
SIGLEC14              0.320   sialic acid binding Ig-like lectin 14 
SIGLEC10              0.240   sialic acid binding Ig-like lectin 10 
SIGLEC11              0.229   sialic acid binding Ig-like lectin 11 isoform 2 [Ho...
SIGLEC11              0.229   sialic acid binding Ig-like lectin 11 isoform 1 [Ho...
SIGLEC7               0.224   sialic acid binding Ig-like lectin 7 isoform 2 [Hom...
CD33                  0.159   CD33 antigen isoform 2 precursor 
MAG                   0.102   myelin associated glycoprotein isoform a precursor [...
MAG                   0.102   myelin associated glycoprotein isoform b precursor [...
SIGLEC1               0.082   sialoadhesin precursor 
CD22                  0.062   CD22 molecule 
BOC                   0.035   brother of CDO 
CADM4                 0.034   cell adhesion molecule 4 
LRIG1                 0.034   leucine-rich repeats and immunoglobulin-like domains...
IGDCC3                0.032   putative neuronal cell adhesion molecule 
HSPG2                 0.031   heparan sulfate proteoglycan 2 
PXDN                  0.031   peroxidasin 
NFASC                 0.030   neurofascin isoform 6 precursor 
NFASC                 0.030   neurofascin isoform 5 precursor 
NFASC                 0.030   neurofascin isoform 1 precursor 
LOC100289200          0.029   PREDICTED: hypothetical protein XP_002342997 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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