Guide to the Human Genome
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Name: SIGLEC1 Sequence: fasta or formatted (1709aa) NCBI GI: 13489095
Description:

sialoadhesin precursor

Referenced in:

Lectin Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.4        177           3
 C cysteine            2.5         43           1
 D aspartate           3.8         65           2
 E glutamate           4.9         83           3
 F phenylalanine       2.3         40           2
 G glycine             8.0        137           3
 H histidine           3.2         55           1
 I isoleucine          2.2         38           1
 K lysine              1.4         24           1
 L leucine            12.8        218           6
 M methionine          1.0         17           2
 N asparagine          2.9         50           1
 P proline             7.0        120           2
 Q glutamine           4.7         80           2
 R arginine            5.9        100           4
 S serine              9.0        154           2
 T threonine           6.6        113           2
 V valine              7.8        133           3
 W tryptophan          1.3         22           1
 Y tyrosine            2.3         40           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sialoadhesin precursor 
HMCN2                 0.053   PREDICTED: hemicentin 2 
HMCN2                 0.053   PREDICTED: hemicentin 2 
HMCN2                 0.053   PREDICTED: hemicentin 2 
TTN                   0.052   titin isoform N2-A 
HSPG2                 0.047   heparan sulfate proteoglycan 2 
CD22                  0.045   CD22 molecule 
HMCN1                 0.043   hemicentin 1 
MAG                   0.035   myelin associated glycoprotein isoform a precursor [...
MAG                   0.035   myelin associated glycoprotein isoform b precursor [...
LOC100292387          0.032   PREDICTED: similar to hemicentin 2 
OBSCN                 0.028   obscurin, cytoskeletal calmodulin and titin-interact...
OBSCN                 0.028   obscurin, cytoskeletal calmodulin and titin-interac...
CEACAM5               0.025   carcinoembryonic antigen-related cell adhesion molec...
SIGLEC11              0.024   sialic acid binding Ig-like lectin 11 isoform 1 [Ho...
SIGLEC10              0.024   sialic acid binding Ig-like lectin 10 
OBSL1                 0.024   obscurin-like 1 
SIGLEC6               0.022   sialic acid binding Ig-like lectin 6 isoform 1 prec...
SIGLEC11              0.022   sialic acid binding Ig-like lectin 11 isoform 2 [Ho...
SIGLEC6               0.022   sialic acid binding Ig-like lectin 6 isoform 3 prec...
SIGLEC6               0.021   sialic acid binding Ig-like lectin 6 isoform 2 prec...
SIGLEC9               0.021   sialic acid binding Ig-like lectin 9 
SIGLEC8               0.021   sialic acid binding Ig-like lectin 8 
SIGLEC12              0.021   sialic acid binding immunoglobulin-like lectin-like ...
SIGLEC12              0.021   sialic acid binding immunoglobulin-like lectin-like ...
FCRL5                 0.020   Fc receptor-like 5 
BOC                   0.020   brother of CDO 
DSCAML1               0.020   Down syndrome cell adhesion molecule like 1 
SIGLEC7               0.019   sialic acid binding Ig-like lectin 7 isoform 1 
KIRREL2               0.019   kin of IRRE-like 2 isoform c 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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