Guide to the Human Genome
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Name: SIGLEC5 Sequence: fasta or formatted (551aa) NCBI GI: 4502659
Description:

sialic acid binding Ig-like lectin 5

Referenced in:

Lectin Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         33           2
 C cysteine            2.9         16           1
 D aspartate           3.3         18           2
 E glutamate           6.7         37           2
 F phenylalanine       3.1         17           2
 G glycine             7.6         42           2
 H histidine           1.3          7           1
 I isoleucine          3.4         19           1
 K lysine              4.2         23           2
 L leucine            12.3         68           4
 M methionine          1.3          7           1
 N asparagine          3.4         19           2
 P proline             8.3         46           2
 Q glutamine           4.7         26           2
 R arginine            5.8         32           2
 S serine             10.5         58           3
 T threonine           5.3         29           2
 V valine              4.9         27           2
 W tryptophan          2.0         11           1
 Y tyrosine            2.9         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sialic acid binding Ig-like lectin 5 
SIGLEC14              0.494   sialic acid binding Ig-like lectin 14 
SIGLEC6               0.313   sialic acid binding Ig-like lectin 6 isoform 1 prec...
SIGLEC6               0.312   sialic acid binding Ig-like lectin 6 isoform 3 prec...
SIGLEC6               0.297   sialic acid binding Ig-like lectin 6 isoform 2 prec...
SIGLEC11              0.285   sialic acid binding Ig-like lectin 11 isoform 2 [Ho...
SIGLEC8               0.279   sialic acid binding Ig-like lectin 8 
SIGLEC11              0.274   sialic acid binding Ig-like lectin 11 isoform 1 [Ho...
SIGLEC7               0.270   sialic acid binding Ig-like lectin 7 isoform 1 
SIGLEC9               0.265   sialic acid binding Ig-like lectin 9 
SIGLEC12              0.261   sialic acid binding immunoglobulin-like lectin-like ...
SIGLEC12              0.259   sialic acid binding immunoglobulin-like lectin-like ...
SIGLEC10              0.231   sialic acid binding Ig-like lectin 10 
CD33                  0.213   CD33 antigen isoform 1 precursor 
SIGLEC7               0.115   sialic acid binding Ig-like lectin 7 isoform 2 [Hom...
MAG                   0.087   myelin associated glycoprotein isoform a precursor [...
MAG                   0.087   myelin associated glycoprotein isoform b precursor [...
CD33                  0.075   CD33 antigen isoform 2 precursor 
CD22                  0.067   CD22 molecule 
SIGLEC1               0.054   sialoadhesin precursor 
FLJ40235              0.047   hypothetical protein LOC284369 
KIRREL                0.038   kin of IRRE like 
LOC100292387          0.034   PREDICTED: similar to hemicentin 2 
HMCN2                 0.034   PREDICTED: hemicentin 2 
SIGLEC15              0.033   sialic acid binding Ig-like lectin 15 
CNTN5                 0.033   contactin 5 isoform long 
CNTN5                 0.033   contactin 5 isoform short 
L1CAM                 0.032   L1 cell adhesion molecule isoform 3 precursor [Homo...
L1CAM                 0.032   L1 cell adhesion molecule isoform 2 precursor 
L1CAM                 0.032   L1 cell adhesion molecule isoform 1 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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