Guide to the Human Genome
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Name: SIGLEC6 Sequence: fasta or formatted (453aa) NCBI GI: 193794821
Description:

sialic acid binding Ig-like lectin 6 isoform 1 precursor

Referenced in:

Lectin Families

Other entries for this name:
alt prot [353aa] sialic acid binding Ig-like lectin 6 isoform 3 precursor
alt prot [437aa] sialic acid binding Ig-like lectin 6 isoform 2 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         35           2
 C cysteine            2.2         10           1
 D aspartate           3.3         15           2
 E glutamate           5.7         26           2
 F phenylalanine       4.0         18           2
 G glycine             7.1         32           2
 H histidine           3.1         14           1
 I isoleucine          3.8         17           1
 K lysine              3.3         15           2
 L leucine             9.9         45           3
 M methionine          1.5          7           1
 N asparagine          3.1         14           1
 P proline             7.7         35           2
 Q glutamine           6.0         27           1
 R arginine            5.3         24           3
 S serine              8.2         37           2
 T threonine           6.8         31           2
 V valine              7.1         32           1
 W tryptophan          2.0          9           1
 Y tyrosine            2.2         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sialic acid binding Ig-like lectin 6 isoform 1 prec... 
SIGLEC6               0.954   sialic acid binding Ig-like lectin 6 isoform 2 prec...
SIGLEC6               0.740   sialic acid binding Ig-like lectin 6 isoform 3 prec...
SIGLEC12              0.440   sialic acid binding immunoglobulin-like lectin-like ...
SIGLEC12              0.434   sialic acid binding immunoglobulin-like lectin-like ...
SIGLEC8               0.423   sialic acid binding Ig-like lectin 8 
SIGLEC7               0.422   sialic acid binding Ig-like lectin 7 isoform 1 
SIGLEC9               0.413   sialic acid binding Ig-like lectin 9 
SIGLEC5               0.382   sialic acid binding Ig-like lectin 5 
SIGLEC14              0.340   sialic acid binding Ig-like lectin 14 
CD33                  0.330   CD33 antigen isoform 1 precursor 
SIGLEC10              0.256   sialic acid binding Ig-like lectin 10 
SIGLEC11              0.246   sialic acid binding Ig-like lectin 11 isoform 2 [Ho...
SIGLEC11              0.246   sialic acid binding Ig-like lectin 11 isoform 1 [Ho...
CD33                  0.167   CD33 antigen isoform 2 precursor 
SIGLEC7               0.148   sialic acid binding Ig-like lectin 7 isoform 2 [Hom...
MAG                   0.099   myelin associated glycoprotein isoform a precursor [...
MAG                   0.099   myelin associated glycoprotein isoform b precursor [...
SIGLEC1               0.083   sialoadhesin precursor 
CD22                  0.060   CD22 molecule 
LRIG1                 0.035   leucine-rich repeats and immunoglobulin-like domains...
CADM4                 0.034   cell adhesion molecule 4 
PXDN                  0.033   peroxidasin 
CEACAM6               0.031   carcinoembryonic antigen-related cell adhesion molec...
NFASC                 0.030   neurofascin isoform 6 precursor 
NFASC                 0.030   neurofascin isoform 5 precursor 
NFASC                 0.030   neurofascin isoform 1 precursor 
BOC                   0.029   brother of CDO 
CEACAM5               0.028   carcinoembryonic antigen-related cell adhesion molec...
CADM1                 0.028   immunoglobulin superfamily, member 4D isoform 2 [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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