Guide to the Human Genome
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Name: SIGLEC10 Sequence: fasta or formatted (697aa) NCBI GI: 31377639
Description:

sialic acid binding Ig-like lectin 10

Referenced in:

Lectin Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         45           2
 C cysteine            2.3         16           1
 D aspartate           2.9         20           1
 E glutamate           5.5         38           2
 F phenylalanine       3.6         25           2
 G glycine             7.0         49           2
 H histidine           2.3         16           1
 I isoleucine          2.3         16           2
 K lysine              3.3         23           2
 L leucine            10.6         74           3
 M methionine          1.3          9           1
 N asparagine          3.3         23           1
 P proline             9.3         65           3
 Q glutamine           6.3         44           2
 R arginine            6.2         43           2
 S serine             11.0         77           3
 T threonine           5.9         41           2
 V valine              6.3         44           2
 W tryptophan          1.9         13           2
 Y tyrosine            2.3         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sialic acid binding Ig-like lectin 10 
SIGLEC11              0.662   sialic acid binding Ig-like lectin 11 isoform 1 [Ho...
SIGLEC11              0.502   sialic acid binding Ig-like lectin 11 isoform 2 [Ho...
SIGLEC8               0.187   sialic acid binding Ig-like lectin 8 
SIGLEC5               0.182   sialic acid binding Ig-like lectin 5 
SIGLEC14              0.177   sialic acid binding Ig-like lectin 14 
SIGLEC12              0.176   sialic acid binding immunoglobulin-like lectin-like ...
SIGLEC12              0.176   sialic acid binding immunoglobulin-like lectin-like ...
SIGLEC7               0.175   sialic acid binding Ig-like lectin 7 isoform 1 
SIGLEC9               0.169   sialic acid binding Ig-like lectin 9 
SIGLEC6               0.165   sialic acid binding Ig-like lectin 6 isoform 1 prec...
SIGLEC6               0.162   sialic acid binding Ig-like lectin 6 isoform 3 prec...
SIGLEC6               0.150   sialic acid binding Ig-like lectin 6 isoform 2 prec...
CD33                  0.148   CD33 antigen isoform 1 precursor 
MAG                   0.118   myelin associated glycoprotein isoform a precursor [...
MAG                   0.118   myelin associated glycoprotein isoform b precursor [...
SIGLEC7               0.075   sialic acid binding Ig-like lectin 7 isoform 2 [Hom...
SIGLEC1               0.059   sialoadhesin precursor 
CD33                  0.057   CD33 antigen isoform 2 precursor 
FLJ40235              0.050   hypothetical protein LOC284369 
CD22                  0.050   CD22 molecule 
HMCN1                 0.047   hemicentin 1 
HMCN2                 0.046   PREDICTED: hemicentin 2 
HMCN2                 0.046   PREDICTED: hemicentin 2 
HMCN2                 0.046   PREDICTED: hemicentin 2 
NCAM1                 0.041   neural cell adhesion molecule 1 isoform 1 
NCAM1                 0.041   neural cell adhesion molecule 1 isoform 3 
PXDN                  0.041   peroxidasin 
NCAM2                 0.041   neural cell adhesion molecule 2 precursor 
LOC100292387          0.040   PREDICTED: similar to hemicentin 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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