Guide to the Human Genome
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Name: SIGLEC11 Sequence: fasta or formatted (602aa) NCBI GI: 205830473
Description:

sialic acid binding Ig-like lectin 11 isoform 2

Referenced in:

Lectin Families

Other entries for this name:
alt prot [698aa] sialic acid binding Ig-like lectin 11 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         43           3
 C cysteine            2.3         14           1
 D aspartate           3.7         22           1
 E glutamate           5.6         34           2
 F phenylalanine       3.2         19           2
 G glycine             8.3         50           3
 H histidine           3.0         18           1
 I isoleucine          2.2         13           2
 K lysine              3.2         19           2
 L leucine            10.8         65           3
 M methionine          1.2          7           1
 N asparagine          2.2         13           2
 P proline             8.1         49           3
 Q glutamine           6.1         37           3
 R arginine            6.5         39           2
 S serine              9.8         59           3
 T threonine           5.5         33           2
 V valine              7.3         44           2
 W tryptophan          1.8         11           1
 Y tyrosine            2.2         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sialic acid binding Ig-like lectin 11 isoform 2 [Ho... 
SIGLEC11              0.749   sialic acid binding Ig-like lectin 11 isoform 1 [Ho...
SIGLEC10              0.584   sialic acid binding Ig-like lectin 10 
SIGLEC5               0.261   sialic acid binding Ig-like lectin 5 
SIGLEC12              0.218   sialic acid binding immunoglobulin-like lectin-like ...
SIGLEC14              0.205   sialic acid binding Ig-like lectin 14 
SIGLEC8               0.204   sialic acid binding Ig-like lectin 8 
SIGLEC7               0.198   sialic acid binding Ig-like lectin 7 isoform 1 
SIGLEC9               0.186   sialic acid binding Ig-like lectin 9 
SIGLEC6               0.185   sialic acid binding Ig-like lectin 6 isoform 1 prec...
SIGLEC6               0.181   sialic acid binding Ig-like lectin 6 isoform 3 prec...
SIGLEC12              0.177   sialic acid binding immunoglobulin-like lectin-like ...
SIGLEC6               0.166   sialic acid binding Ig-like lectin 6 isoform 2 prec...
CD33                  0.156   CD33 antigen isoform 1 precursor 
SIGLEC7               0.129   sialic acid binding Ig-like lectin 7 isoform 2 [Hom...
MAG                   0.094   myelin associated glycoprotein isoform a precursor [...
MAG                   0.094   myelin associated glycoprotein isoform b precursor [...
SIGLEC1               0.061   sialoadhesin precursor 
CD33                  0.059   CD33 antigen isoform 2 precursor 
CD22                  0.053   CD22 molecule 
HMCN2                 0.043   PREDICTED: hemicentin 2 
HMCN2                 0.043   PREDICTED: hemicentin 2 
HMCN2                 0.043   PREDICTED: hemicentin 2 
NCAM1                 0.041   neural cell adhesion molecule 1 isoform 1 
NCAM1                 0.041   neural cell adhesion molecule 1 isoform 3 
HSPG2                 0.041   heparan sulfate proteoglycan 2 
HMCN1                 0.041   hemicentin 1 
LOC100289200          0.041   PREDICTED: hypothetical protein XP_002342997 
LOC100292387          0.041   PREDICTED: similar to hemicentin 2 
PXDN                  0.041   peroxidasin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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