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Search of human proteins with 238859597
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|238859597 RNA binding motif protein 34 isoform 1 [Homo
sapiens]
(430 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|238859597 RNA binding motif protein 34 isoform 1 [Homo sapiens] 839 0.0
gi|238859599 RNA binding motif protein 34 isoform 2 [Homo sapiens] 432 e-121
gi|4758876 poly(A) binding protein, nuclear 1 [Homo sapiens] 67 3e-11
gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2, ... 65 1e-10
gi|77695912 TIA-1 related protein isoform 2 [Homo sapiens] 64 2e-10
gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens] 63 5e-10
gi|122937418 similar to poly(A)binding protein nuclear-like 1 [H... 62 1e-09
gi|226497734 RNA binding motif protein 19 [Homo sapiens] 61 2e-09
gi|226497654 RNA binding motif protein 19 [Homo sapiens] 61 2e-09
gi|226497574 RNA binding motif protein 19 [Homo sapiens] 61 2e-09
gi|118600973 RNA binding motif protein, X-linked 2 [Homo sapiens] 61 2e-09
gi|7661952 squamous cell carcinoma antigen recognized by T cells... 60 3e-09
gi|4507499 TIA-1 related protein isoform 1 [Homo sapiens] 60 4e-09
gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens] 59 1e-08
gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens] 59 1e-08
gi|5803137 RNA binding motif protein 3 [Homo sapiens] 59 1e-08
gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isofor... 57 3e-08
gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Ho... 57 3e-08
gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo... 57 3e-08
gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Ho... 57 3e-08
gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo sapi... 56 7e-08
gi|51243065 zinc finger CCHC-type and RNA binding motif 1 [Homo ... 55 1e-07
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens] 55 2e-07
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens] 55 2e-07
gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform ... 55 2e-07
gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform ... 55 2e-07
gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b ... 54 2e-07
gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d ... 54 2e-07
gi|50053795 eukaryotic translation initiation factor 4B [Homo sa... 54 2e-07
gi|116734698 RNA binding motif protein 23 isoform 3 [Homo sapiens] 54 2e-07
>gi|238859597 RNA binding motif protein 34 isoform 1 [Homo sapiens]
Length = 430
Score = 839 bits (2168), Expect = 0.0
Identities = 430/430 (100%), Positives = 430/430 (100%)
Query: 1 MALEGMSKRKRKRSVQEGENPDDGVRGSPPEDYRLGQVASSLFRGEHHSRGGTGRLASLF 60
MALEGMSKRKRKRSVQEGENPDDGVRGSPPEDYRLGQVASSLFRGEHHSRGGTGRLASLF
Sbjct: 1 MALEGMSKRKRKRSVQEGENPDDGVRGSPPEDYRLGQVASSLFRGEHHSRGGTGRLASLF 60
Query: 61 SSLEPQIQPVYVPVPKQTIKKTKRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLA 120
SSLEPQIQPVYVPVPKQTIKKTKRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLA
Sbjct: 61 SSLEPQIQPVYVPVPKQTIKKTKRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLA 120
Query: 121 DRESALASADLEEEIHQKQGQKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQEEER 180
DRESALASADLEEEIHQKQGQKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQEEER
Sbjct: 121 DRESALASADLEEEIHQKQGQKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQEEER 180
Query: 181 LKNERTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPD 240
LKNERTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPD
Sbjct: 181 LKNERTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPD 240
Query: 241 QKNINAYVVFKEESAATQALKRNGAQIADGFRIRVDLASETSSRDKRSVFVGNLPYKVEE 300
QKNINAYVVFKEESAATQALKRNGAQIADGFRIRVDLASETSSRDKRSVFVGNLPYKVEE
Sbjct: 241 QKNINAYVVFKEESAATQALKRNGAQIADGFRIRVDLASETSSRDKRSVFVGNLPYKVEE 300
Query: 301 SAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLNNSELMGRKLRVM 360
SAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLNNSELMGRKLRVM
Sbjct: 301 SAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLNNSELMGRKLRVM 360
Query: 361 RSVNKEKFKQQNSNPRLKNVSKPKQGLNFTSKTAEGHPKSLFIGEKAVLLKTKKKGQKKS 420
RSVNKEKFKQQNSNPRLKNVSKPKQGLNFTSKTAEGHPKSLFIGEKAVLLKTKKKGQKKS
Sbjct: 361 RSVNKEKFKQQNSNPRLKNVSKPKQGLNFTSKTAEGHPKSLFIGEKAVLLKTKKKGQKKS 420
Query: 421 GRPKKQRKQK 430
GRPKKQRKQK
Sbjct: 421 GRPKKQRKQK 430
>gi|238859599 RNA binding motif protein 34 isoform 2 [Homo sapiens]
Length = 225
Score = 432 bits (1110), Expect = e-121
Identities = 219/220 (99%), Positives = 220/220 (100%)
Query: 1 MALEGMSKRKRKRSVQEGENPDDGVRGSPPEDYRLGQVASSLFRGEHHSRGGTGRLASLF 60
MALEGMSKRKRKRSVQEGENPDDGVRGSPPEDYRLGQVASSLFRGEHHSRGGTGRLASLF
Sbjct: 1 MALEGMSKRKRKRSVQEGENPDDGVRGSPPEDYRLGQVASSLFRGEHHSRGGTGRLASLF 60
Query: 61 SSLEPQIQPVYVPVPKQTIKKTKRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLA 120
SSLEPQIQPVYVPVPKQTIKKTKRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLA
Sbjct: 61 SSLEPQIQPVYVPVPKQTIKKTKRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLA 120
Query: 121 DRESALASADLEEEIHQKQGQKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQEEER 180
DRESALASADLEEEIHQKQGQKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQEEER
Sbjct: 121 DRESALASADLEEEIHQKQGQKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQEEER 180
Query: 181 LKNERTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLI 220
LKNERTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSL+
Sbjct: 181 LKNERTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLV 220
Score = 35.4 bits (80), Expect = 0.10
Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 17/136 (12%)
Query: 199 KKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNINAYVVFKEESAATQ 258
KK K +E + R S PA+ +KK K D+++ A +EE Q
Sbjct: 80 KKTKRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLADRESALASADLEEEIHQKQ 139
Query: 259 ALKRN----GAQIAD------------GFRIRVDLASETSS-RDKRSVFVGNLPYKVEES 301
KR G ++AD R ++ + E +++R+VFVGNLP +
Sbjct: 140 GQKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQEEERLKNERTVFVGNLPVTCNKK 199
Query: 302 AIEKHFLDCGSIMAVR 317
++ F + G I +VR
Sbjct: 200 KLKSFFKEYGQIESVR 215
>gi|4758876 poly(A) binding protein, nuclear 1 [Homo sapiens]
Length = 306
Score = 67.0 bits (162), Expect = 3e-11
Identities = 32/81 (39%), Positives = 48/81 (59%)
Query: 280 ETSSRDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTD 339
E D RS++VGN+ Y +E HF CGS+ V I+ DK +G KGF Y+ F + +
Sbjct: 165 EKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE 224
Query: 340 SVHLALKLNNSELMGRKLRVM 360
SV +L L+ S GR+++V+
Sbjct: 225 SVRTSLALDESLFRGRQIKVI 245
>gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2,
64kDa, tau variant [Homo sapiens]
Length = 616
Score = 65.1 bits (157), Expect = 1e-10
Identities = 35/90 (38%), Positives = 56/90 (62%), Gaps = 4/90 (4%)
Query: 284 RDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHL 343
R RSVFVGN+PY+ E ++ F + GS+++ R+V D+ TG KG+G+ +++ ++
Sbjct: 13 RSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALS 72
Query: 344 ALK-LNNSELMGRKLRVMRSV---NKEKFK 369
A++ LN E GR LRV + NKE+ K
Sbjct: 73 AMRNLNGREFSGRALRVDNAASEKNKEELK 102
Score = 35.0 bits (79), Expect = 0.13
Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 17/102 (16%)
Query: 185 RTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNI 244
R+VFVGN+P +++LK F E G + V FR + E K
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSV--VSFRLVYDRETGKPKGY-------------- 59
Query: 245 NAYVVFKEESAATQALKRNGAQIADGFRIRVDLASETSSRDK 286
+ ++++ A A++ + G +RVD A+ ++++
Sbjct: 60 -GFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEE 100
>gi|77695912 TIA-1 related protein isoform 2 [Homo sapiens]
Length = 392
Score = 64.3 bits (155), Expect = 2e-10
Identities = 58/226 (25%), Positives = 99/226 (43%), Gaps = 16/226 (7%)
Query: 185 RTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNI 244
RT++VGNL + + F + G +S + + P ++ + + +
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGF--SVLQHTSNDP 66
Query: 245 NAYVVFKEESAATQALKRNGAQIADGFRIRVDLASETSSRDKRS-----VFVGNLPYKVE 299
+V F E A AL + G ++V+ A+ SS+ K + VFVG+L ++
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 126
Query: 300 ESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFEN-TDSVHLALKLNNSELMGRKLR 358
I+ F G I R+V+D TG KG+G+V F N D+ + + + L GR++R
Sbjct: 127 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 186
Query: 359 VMRSVNK---EKFKQQNSNPRLK-----NVSKPKQGLNFTSKTAEG 396
+ K K Q+N+ +L+ N S PK + A G
Sbjct: 187 TNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASG 232
Score = 37.7 bits (86), Expect = 0.020
Identities = 45/219 (20%), Positives = 85/219 (38%), Gaps = 53/219 (24%)
Query: 170 KKIQIN------QEEERLKNERTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAE 223
K++++N +++ N VFVG+L + +KS F +G+I R
Sbjct: 93 KEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDAR-------- 144
Query: 224 GTLSKKLAAIKRKIHPDQKNINAYVVFKEESAATQALKRNGAQIADGFRIRVDLAS---- 279
+ K +A K K + +V F + A A+ G Q G +IR + A+
Sbjct: 145 --VVKDMATGKSKGY-------GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPP 195
Query: 280 -------------------ETSSRDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVR 320
SS +V+ G + + + + + F G IM +R+
Sbjct: 196 APKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP 255
Query: 321 DKMTGIGKGFGYVLFENTDS-VHLALKLNNSELMGRKLR 358
+ KG+ +V F +S H + +N + + G ++
Sbjct: 256 E------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 288
>gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens]
Length = 577
Score = 63.2 bits (152), Expect = 5e-10
Identities = 34/90 (37%), Positives = 55/90 (61%), Gaps = 4/90 (4%)
Query: 284 RDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHL 343
R RSVFVGN+PY+ E ++ F + G +++ R+V D+ TG KG+G+ +++ ++
Sbjct: 13 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALS 72
Query: 344 ALK-LNNSELMGRKLRVMRSV---NKEKFK 369
A++ LN E GR LRV + NKE+ K
Sbjct: 73 AMRNLNGREFSGRALRVDNAASEKNKEELK 102
Score = 35.8 bits (81), Expect = 0.077
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 18/109 (16%)
Query: 185 RTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNI 244
R+VFVGN+P +++LK F E G + V FR + E K
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPV--VSFRLVYDRETGKPKGY-------------- 59
Query: 245 NAYVVFKEESAATQALKRNGAQIADGFRIRVD-LASETSSRDKRSVFVG 292
+ ++++ A A++ + G +RVD ASE + + +S+ G
Sbjct: 60 -GFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTG 107
>gi|122937418 similar to poly(A)binding protein nuclear-like 1 [Homo
sapiens]
Length = 289
Score = 61.6 bits (148), Expect = 1e-09
Identities = 31/81 (38%), Positives = 45/81 (55%)
Query: 280 ETSSRDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTD 339
E D RSV+VGN+ Y +E HF CG + V I+ DK +G KG+ Y+ F
Sbjct: 140 EKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKG 199
Query: 340 SVHLALKLNNSELMGRKLRVM 360
SV A++L+ S GR ++V+
Sbjct: 200 SVQAAVELDQSLFRGRVIKVL 220
>gi|226497734 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 61.2 bits (147), Expect = 2e-09
Identities = 76/360 (21%), Positives = 142/360 (39%), Gaps = 47/360 (13%)
Query: 83 KRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLADRESALASADLEEE----IHQK 138
+ +EEE + +E S EP V+ + + K + + +S++ EE +H
Sbjct: 178 QESEEEGAGEDLEEEASLEPKAAVQKELSDMDYLKSKMVKAGSSSSSEEEESEDEAVHCD 237
Query: 139 QGQKRK----NSQPGVKVADRKILDDTEDTVVSQRKKIQINQEEERLKNERTVFVGNLPV 194
+G + + ++ P ++ D K + +++ + E E+ N++ P
Sbjct: 238 EGSEAEEEDSSATPVLQERDSKGAGQEQGMPAGKKRPPEARAETEKPANQKE------PT 291
Query: 195 TCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNINAYVVFKEES 254
TC+ KL+ G +V ++++ L I R H ++ +V F E
Sbjct: 292 TCHTVKLR------GAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGY-IFVDFSNEE 344
Query: 255 AATQALKRN----GAQIADGFR---------------------IRVDLASETSSRDKRSV 289
QALK N G + + FR I + E + +
Sbjct: 345 EVKQALKCNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRL 404
Query: 290 FVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTD-SVHLALKLN 348
FV NLPY E +EK F G + + D +T KGF ++ F + +V +++
Sbjct: 405 FVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEVD 464
Query: 349 NSELMGRKLRVMRSVNKEKFKQQNSNPRLKNVSKPKQGLNFTSKTAEGHPKSLFIGEKAV 408
GR L V+ S K++ + S + K K+ + + + + +LF+G AV
Sbjct: 465 GQVFQGRMLHVLPSTIKKEASEDASALGSSSYKKKKEAQDKANSASSHNWNTLFMGPNAV 524
Score = 60.1 bits (144), Expect = 4e-09
Identities = 65/264 (24%), Positives = 111/264 (42%), Gaps = 49/264 (18%)
Query: 116 EKKLADRESALASADLEEEIHQKQGQKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQIN 175
+KKL D S D E G+ ++ P TE+ + K++
Sbjct: 669 KKKLQDTPSEPMEKDPAEPETVPDGETPEDENP------------TEEGADNSSAKMEEE 716
Query: 176 QEEERLKNER----TVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLA 231
+EEE + E T+F+ NL ++KLK F + G ++S ++SKK
Sbjct: 717 EEEEEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSC----------SISKK-- 764
Query: 232 AIKRKIHPDQKNINAYVVFKEESAATQALKRNGAQIADGFRIRVDLASE------TSSRD 285
K K +V +++ A +ALK+ + DG ++ V ++ T +R
Sbjct: 765 --KNKAGVLLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAVTLARK 822
Query: 286 KR--------SVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIG--KGFGYVLF 335
K+ + V N+P++ I + F G + VR+ + KMTG G +GFG+V F
Sbjct: 823 KQVPRKQTTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPK-KMTGTGTHRGFGFVDF 881
Query: 336 ENTDSVHLALK--LNNSELMGRKL 357
A +++ L GR+L
Sbjct: 882 LTKQDAKRAFNALCHSTHLYGRRL 905
>gi|226497654 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 61.2 bits (147), Expect = 2e-09
Identities = 76/360 (21%), Positives = 142/360 (39%), Gaps = 47/360 (13%)
Query: 83 KRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLADRESALASADLEEE----IHQK 138
+ +EEE + +E S EP V+ + + K + + +S++ EE +H
Sbjct: 178 QESEEEGAGEDLEEEASLEPKAAVQKELSDMDYLKSKMVKAGSSSSSEEEESEDEAVHCD 237
Query: 139 QGQKRK----NSQPGVKVADRKILDDTEDTVVSQRKKIQINQEEERLKNERTVFVGNLPV 194
+G + + ++ P ++ D K + +++ + E E+ N++ P
Sbjct: 238 EGSEAEEEDSSATPVLQERDSKGAGQEQGMPAGKKRPPEARAETEKPANQKE------PT 291
Query: 195 TCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNINAYVVFKEES 254
TC+ KL+ G +V ++++ L I R H ++ +V F E
Sbjct: 292 TCHTVKLR------GAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGY-IFVDFSNEE 344
Query: 255 AATQALKRN----GAQIADGFR---------------------IRVDLASETSSRDKRSV 289
QALK N G + + FR I + E + +
Sbjct: 345 EVKQALKCNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRL 404
Query: 290 FVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTD-SVHLALKLN 348
FV NLPY E +EK F G + + D +T KGF ++ F + +V +++
Sbjct: 405 FVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEVD 464
Query: 349 NSELMGRKLRVMRSVNKEKFKQQNSNPRLKNVSKPKQGLNFTSKTAEGHPKSLFIGEKAV 408
GR L V+ S K++ + S + K K+ + + + + +LF+G AV
Sbjct: 465 GQVFQGRMLHVLPSTIKKEASEDASALGSSSYKKKKEAQDKANSASSHNWNTLFMGPNAV 524
Score = 60.1 bits (144), Expect = 4e-09
Identities = 65/264 (24%), Positives = 111/264 (42%), Gaps = 49/264 (18%)
Query: 116 EKKLADRESALASADLEEEIHQKQGQKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQIN 175
+KKL D S D E G+ ++ P TE+ + K++
Sbjct: 669 KKKLQDTPSEPMEKDPAEPETVPDGETPEDENP------------TEEGADNSSAKMEEE 716
Query: 176 QEEERLKNER----TVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLA 231
+EEE + E T+F+ NL ++KLK F + G ++S ++SKK
Sbjct: 717 EEEEEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSC----------SISKK-- 764
Query: 232 AIKRKIHPDQKNINAYVVFKEESAATQALKRNGAQIADGFRIRVDLASE------TSSRD 285
K K +V +++ A +ALK+ + DG ++ V ++ T +R
Sbjct: 765 --KNKAGVLLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAVTLARK 822
Query: 286 KR--------SVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIG--KGFGYVLF 335
K+ + V N+P++ I + F G + VR+ + KMTG G +GFG+V F
Sbjct: 823 KQVPRKQTTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPK-KMTGTGTHRGFGFVDF 881
Query: 336 ENTDSVHLALK--LNNSELMGRKL 357
A +++ L GR+L
Sbjct: 882 LTKQDAKRAFNALCHSTHLYGRRL 905
>gi|226497574 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 61.2 bits (147), Expect = 2e-09
Identities = 76/360 (21%), Positives = 142/360 (39%), Gaps = 47/360 (13%)
Query: 83 KRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLADRESALASADLEEE----IHQK 138
+ +EEE + +E S EP V+ + + K + + +S++ EE +H
Sbjct: 178 QESEEEGAGEDLEEEASLEPKAAVQKELSDMDYLKSKMVKAGSSSSSEEEESEDEAVHCD 237
Query: 139 QGQKRK----NSQPGVKVADRKILDDTEDTVVSQRKKIQINQEEERLKNERTVFVGNLPV 194
+G + + ++ P ++ D K + +++ + E E+ N++ P
Sbjct: 238 EGSEAEEEDSSATPVLQERDSKGAGQEQGMPAGKKRPPEARAETEKPANQKE------PT 291
Query: 195 TCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNINAYVVFKEES 254
TC+ KL+ G +V ++++ L I R H ++ +V F E
Sbjct: 292 TCHTVKLR------GAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGY-IFVDFSNEE 344
Query: 255 AATQALKRN----GAQIADGFR---------------------IRVDLASETSSRDKRSV 289
QALK N G + + FR I + E + +
Sbjct: 345 EVKQALKCNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRL 404
Query: 290 FVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTD-SVHLALKLN 348
FV NLPY E +EK F G + + D +T KGF ++ F + +V +++
Sbjct: 405 FVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEVD 464
Query: 349 NSELMGRKLRVMRSVNKEKFKQQNSNPRLKNVSKPKQGLNFTSKTAEGHPKSLFIGEKAV 408
GR L V+ S K++ + S + K K+ + + + + +LF+G AV
Sbjct: 465 GQVFQGRMLHVLPSTIKKEASEDASALGSSSYKKKKEAQDKANSASSHNWNTLFMGPNAV 524
Score = 60.1 bits (144), Expect = 4e-09
Identities = 65/264 (24%), Positives = 111/264 (42%), Gaps = 49/264 (18%)
Query: 116 EKKLADRESALASADLEEEIHQKQGQKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQIN 175
+KKL D S D E G+ ++ P TE+ + K++
Sbjct: 669 KKKLQDTPSEPMEKDPAEPETVPDGETPEDENP------------TEEGADNSSAKMEEE 716
Query: 176 QEEERLKNER----TVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLA 231
+EEE + E T+F+ NL ++KLK F + G ++S ++SKK
Sbjct: 717 EEEEEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSC----------SISKK-- 764
Query: 232 AIKRKIHPDQKNINAYVVFKEESAATQALKRNGAQIADGFRIRVDLASE------TSSRD 285
K K +V +++ A +ALK+ + DG ++ V ++ T +R
Sbjct: 765 --KNKAGVLLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAVTLARK 822
Query: 286 KR--------SVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIG--KGFGYVLF 335
K+ + V N+P++ I + F G + VR+ + KMTG G +GFG+V F
Sbjct: 823 KQVPRKQTTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPK-KMTGTGTHRGFGFVDF 881
Query: 336 ENTDSVHLALK--LNNSELMGRKL 357
A +++ L GR+L
Sbjct: 882 LTKQDAKRAFNALCHSTHLYGRRL 905
>gi|118600973 RNA binding motif protein, X-linked 2 [Homo sapiens]
Length = 322
Score = 60.8 bits (146), Expect = 2e-09
Identities = 43/148 (29%), Positives = 72/148 (48%), Gaps = 9/148 (6%)
Query: 284 RDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHL 343
+D +F+G LPY++ E I F G I+ + +VRDK TG KGF ++ +E+ S L
Sbjct: 33 KDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTIL 92
Query: 344 AL-KLNNSELMGRKLRVMRSVNKEKFKQQNSNPRLKNVSKPKQGLNFTSKTAEGHPKSLF 402
A+ N ++ GR +RV N ++ + + +V++ Q K S
Sbjct: 93 AVDNFNGIKIKGRTIRVDHVSN---YRAPKDSEEIDDVTRQLQ-----EKGCGARTPSPS 144
Query: 403 IGEKAVLLKTKKKGQKKSGRPKKQRKQK 430
+ E + K KK +K KK++K+K
Sbjct: 145 LSESSEDEKPTKKHKKDKKEKKKKKKEK 172
Score = 30.0 bits (66), Expect = 4.2
Identities = 38/144 (26%), Positives = 60/144 (41%), Gaps = 25/144 (17%)
Query: 91 TSQIERPLSQEPAKKVKAKKKHTNAEKKLADRESALASADLEEEIHQKQGQKRKNSQPGV 150
+S+ E+P + KK K +KK EK+ ADRE Q ++ +S P
Sbjct: 148 SSEDEKPTKKH--KKDKKEKKKKKKEKEKADRE--------------VQAEQPSSSSPRR 191
Query: 151 KVADRKILDDT----EDTVVSQRKKIQINQEEERLKNERTVFVG---NLPVTCNKKKLKS 203
K K DDT + S+R + +E ++L RT + G +L K+K K
Sbjct: 192 KTVKEK--DDTGPKKHSSKNSERAQKSEPREGQKLPKSRTAYSGGAEDLERELKKEKPKH 249
Query: 204 FFKEYGQIESVRFRSLIPAEGTLS 227
K + E+ ++ I G S
Sbjct: 250 EHKSSSRREAREEKTRIRDRGRSS 273
>gi|7661952 squamous cell carcinoma antigen recognized by T cells 3
[Homo sapiens]
Length = 963
Score = 60.5 bits (145), Expect = 3e-09
Identities = 69/288 (23%), Positives = 120/288 (41%), Gaps = 50/288 (17%)
Query: 86 EEEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLADRESALASADLEEEIHQKQGQ---- 141
+EEE Q +R +++ K +K KKK EK+ AD + D EEE K+ +
Sbjct: 593 QEEEKAEQRKRARAEK--KALKKKKKIRGPEKRGADEDDEKEWGDDEEEQPSKRRRVENS 650
Query: 142 -----KRKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQEEERL-----KNERTVFVGN 191
+ +N + A + D E + K + ++ ++ K+ TVFV N
Sbjct: 651 IPAAGETQNVEVAAGPAGKCAAVDVEPPSKQKEKAASLKRDMPKVLHDSSKDSITVFVSN 710
Query: 192 LPVTCNK--KKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNINAYVV 249
LP + + KL+ F+ G++ V+ R + G YV
Sbjct: 711 LPYSMQEPDTKLRPLFEACGEV--VQIRPIFSNRGDFRG----------------YCYVE 752
Query: 250 FKEESAATQALKRNGAQIADGFRIRVDLASETS------------SRDKRSVFVGNLPYK 297
FKEE +A QAL+ + + +G + V + S S +K +F+ LP+
Sbjct: 753 FKEEKSALQALEMDRKSV-EGRPMFVSPCVDKSKNPDFKVFRYSTSLEKHKLFISGLPFS 811
Query: 298 VEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLAL 345
+ +E+ G++ +R+V ++ G KG YV +EN A+
Sbjct: 812 CTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAV 858
Score = 48.1 bits (113), Expect = 1e-05
Identities = 59/267 (22%), Positives = 113/267 (42%), Gaps = 51/267 (19%)
Query: 104 KKVKAKKKHTNAEK-KLADRESALASADLEEEIHQKQGQKRKNSQPGVKVADRKILDDTE 162
+K + + N ++ K A++E+AL + E+ +K+ + K + + +K + E
Sbjct: 567 QKTETRLARVNEQRMKAAEKEAALVQQEEEKAEQRKRARAEKKA-----LKKKKKIRGPE 621
Query: 163 DTVVSQRKKIQINQEEERLKNERTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPA 222
+ + + +EE ++R ++P G+ ++V A
Sbjct: 622 KRGADEDDEKEWGDDEEEQPSKRRRVENSIPAA-------------GETQNVEV-----A 663
Query: 223 EGTLSKKLAAIKRKIHPDQKNINAYVVFKEESAATQALKRNGAQIADGFRIRVDLASETS 282
G K A + P K KE++A+ LKR+ ++ S
Sbjct: 664 AGPAGKCAAV---DVEPPSKQ-------KEKAAS---LKRDMPKVL-----------HDS 699
Query: 283 SRDKRSVFVGNLPYKVEE--SAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDS 340
S+D +VFV NLPY ++E + + F CG ++ +R + G +G+ YV F+ S
Sbjct: 700 SKDSITVFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSN-RGDFRGYCYVEFKEEKS 758
Query: 341 VHLALKLNNSELMGRKLRVMRSVNKEK 367
AL+++ + GR + V V+K K
Sbjct: 759 ALQALEMDRKSVEGRPMFVSPCVDKSK 785
Score = 31.6 bits (70), Expect = 1.5
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 19/84 (22%)
Query: 187 VFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNINA 246
+F+ LP +C K++L+ K +G ++ +R L+ K L A
Sbjct: 803 LFISGLPFSCTKEELEEICKAHGTVKDLR---LVTNRAGKPKGL---------------A 844
Query: 247 YVVFKEESAATQA-LKRNGAQIAD 269
YV ++ ES A+QA +K +G I +
Sbjct: 845 YVEYENESQASQAVMKMDGMTIKE 868
>gi|4507499 TIA-1 related protein isoform 1 [Homo sapiens]
Length = 375
Score = 60.1 bits (144), Expect = 4e-09
Identities = 60/226 (26%), Positives = 98/226 (43%), Gaps = 33/226 (14%)
Query: 185 RTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNI 244
RT++VGNL + + F + G +S + + E T + ++ H D
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMIT----EHTSNDPYCFVEFYEHRD---- 60
Query: 245 NAYVVFKEESAATQALKRNGAQIADGFRIRVDLASETSSRDKRS-----VFVGNLPYKVE 299
AA NG +I G ++V+ A+ SS+ K + VFVG+L ++
Sbjct: 61 ----------AAAALAAMNGRKIL-GKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 109
Query: 300 ESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFEN-TDSVHLALKLNNSELMGRKLR 358
I+ F G I R+V+D TG KG+G+V F N D+ + + + L GR++R
Sbjct: 110 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 169
Query: 359 VMRSVNK---EKFKQQNSNPRLK-----NVSKPKQGLNFTSKTAEG 396
+ K K Q+N+ +L+ N S PK + A G
Sbjct: 170 TNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASG 215
Score = 37.7 bits (86), Expect = 0.020
Identities = 45/219 (20%), Positives = 85/219 (38%), Gaps = 53/219 (24%)
Query: 170 KKIQIN------QEEERLKNERTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAE 223
K++++N +++ N VFVG+L + +KS F +G+I R
Sbjct: 76 KEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDAR-------- 127
Query: 224 GTLSKKLAAIKRKIHPDQKNINAYVVFKEESAATQALKRNGAQIADGFRIRVDLAS---- 279
+ K +A K K + +V F + A A+ G Q G +IR + A+
Sbjct: 128 --VVKDMATGKSKGY-------GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPP 178
Query: 280 -------------------ETSSRDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVR 320
SS +V+ G + + + + + F G IM +R+
Sbjct: 179 APKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP 238
Query: 321 DKMTGIGKGFGYVLFENTDS-VHLALKLNNSELMGRKLR 358
+ KG+ +V F +S H + +N + + G ++
Sbjct: 239 E------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 271
>gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens]
Length = 524
Score = 58.5 bits (140), Expect = 1e-08
Identities = 66/304 (21%), Positives = 126/304 (41%), Gaps = 37/304 (12%)
Query: 80 KKTKRNEEEESTSQIERPLSQEPAK-KVKAKKKHTNAEKKLADRESALASADLEEEIHQK 138
KK K+++ + + +R S+E + + + +KK + E+K + + S + +
Sbjct: 33 KKRKKSKSRSRSHERKRSKSKERKRSRDRERKKSKSRERKRSRSKERRRSRSRSRDRRFR 92
Query: 139 QGQKRKNSQPGVKVADRKILDDTEDTVVSQRK----------KIQINQEEERLKNE---- 184
+ S P A R + +S+R+ K + + + L E
Sbjct: 93 GRYRSPYSGPKFNSAIRGKIGLPHSIKLSRRRSRSKSPFRKDKSPVREPIDNLTPEERDA 152
Query: 185 RTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNI 244
RTVF L + L+ FF G++ VR S SK +A ++ D ++
Sbjct: 153 RTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMIS--DRNSRRSKGIAYVE---FVDVSSV 207
Query: 245 NAYVVFKEESA--------ATQALKRNGAQIADGFRIRVDLASETSSRDKRSVFVGNLPY 296
+ + A+QA K A +A+ + S ++VG+L +
Sbjct: 208 PLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNL--------QKGSAGPMRLYVGSLHF 259
Query: 297 KVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLAL-KLNNSELMGR 355
+ E + F G I +++++ D TG KG+G++ F +++ AL +LN EL GR
Sbjct: 260 NITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGR 319
Query: 356 KLRV 359
++V
Sbjct: 320 PMKV 323
Score = 45.4 bits (106), Expect = 1e-04
Identities = 25/79 (31%), Positives = 40/79 (50%)
Query: 284 RDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHL 343
RD R+VF L ++ +E+ F G + VR++ D+ + KG YV F + SV L
Sbjct: 150 RDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPL 209
Query: 344 ALKLNNSELMGRKLRVMRS 362
A+ L ++G + V S
Sbjct: 210 AIGLTGQRVLGVPIIVQAS 228
>gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens]
Length = 530
Score = 58.5 bits (140), Expect = 1e-08
Identities = 66/304 (21%), Positives = 126/304 (41%), Gaps = 37/304 (12%)
Query: 80 KKTKRNEEEESTSQIERPLSQEPAK-KVKAKKKHTNAEKKLADRESALASADLEEEIHQK 138
KK K+++ + + +R S+E + + + +KK + E+K + + S + +
Sbjct: 33 KKRKKSKSRSRSHERKRSKSKERKRSRDRERKKSKSRERKRSRSKERRRSRSRSRDRRFR 92
Query: 139 QGQKRKNSQPGVKVADRKILDDTEDTVVSQRK----------KIQINQEEERLKNE---- 184
+ S P A R + +S+R+ K + + + L E
Sbjct: 93 GRYRSPYSGPKFNSAIRGKIGLPHSIKLSRRRSRSKSPFRKDKSPVREPIDNLTPEERDA 152
Query: 185 RTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNI 244
RTVF L + L+ FF G++ VR S SK +A ++ D ++
Sbjct: 153 RTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMIS--DRNSRRSKGIAYVE---FVDVSSV 207
Query: 245 NAYVVFKEESA--------ATQALKRNGAQIADGFRIRVDLASETSSRDKRSVFVGNLPY 296
+ + A+QA K A +A+ + S ++VG+L +
Sbjct: 208 PLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNL--------QKGSAGPMRLYVGSLHF 259
Query: 297 KVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLAL-KLNNSELMGR 355
+ E + F G I +++++ D TG KG+G++ F +++ AL +LN EL GR
Sbjct: 260 NITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGR 319
Query: 356 KLRV 359
++V
Sbjct: 320 PMKV 323
Score = 45.4 bits (106), Expect = 1e-04
Identities = 25/79 (31%), Positives = 40/79 (50%)
Query: 284 RDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHL 343
RD R+VF L ++ +E+ F G + VR++ D+ + KG YV F + SV L
Sbjct: 150 RDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPL 209
Query: 344 ALKLNNSELMGRKLRVMRS 362
A+ L ++G + V S
Sbjct: 210 AIGLTGQRVLGVPIIVQAS 228
>gi|5803137 RNA binding motif protein 3 [Homo sapiens]
Length = 157
Score = 58.5 bits (140), Expect = 1e-08
Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 283 SRDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVH 342
S ++ +FVG L + +E A+E HF G I V +V+D+ T +GFG++ F N +
Sbjct: 2 SSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHAS 61
Query: 343 LALK-LNNSELMGRKLRV 359
+A++ +N L GR++RV
Sbjct: 62 VAMRAMNGESLDGRQIRV 79
>gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isoform
B1 [Homo sapiens]
Length = 353
Score = 57.0 bits (136), Expect = 3e-08
Identities = 47/227 (20%), Positives = 106/227 (46%), Gaps = 38/227 (16%)
Query: 158 LDDTEDTVVSQRKKIQINQEEERLKNERTVFVGNLPVTCNKKKLKSFFKEYGQIE----- 212
++ T +TV +RKK +E+E+ R +F+G L ++ L+++++++G++
Sbjct: 1 MEKTLETVPLERKK----REKEQF---RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVM 53
Query: 213 ----SVRFRSL-IPAEGTLSKKLAAIKRKIHPDQKNINAYVVFKEESAATQALKRNGAQI 267
S R R ++++ AA+ + H +I+ VV + + A + + GA +
Sbjct: 54 RDPASKRSRGFGFVTFSSMAEVDAAMAARPH----SIDGRVVEPKRAVAREESGKPGAHV 109
Query: 268 ADGFRIRVDLASETSSRDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIG 327
+ +FVG + EE + +F + G I + I+ D+ +G
Sbjct: 110 T-----------------VKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKK 152
Query: 328 KGFGYVLFENTDSVHLALKLNNSELMGRKLRVMRSVNKEKFKQQNSN 374
+GFG+V F++ D V + + G V +++++++ ++ S+
Sbjct: 153 RGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSS 199
Score = 44.7 bits (104), Expect = 2e-04
Identities = 24/104 (23%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 280 ETSSRDK---RSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFE 336
E R+K R +F+G L ++ E ++ ++ G + ++RD + +GFG+V F
Sbjct: 11 ERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFS 70
Query: 337 NTDSVHLALKLNNSELMGRKLRVMRSVNKEKFKQQNSNPRLKNV 380
+ V A+ + GR + R+V +E+ + ++ +K +
Sbjct: 71 SMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKL 114
>gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Homo
sapiens]
Length = 631
Score = 57.0 bits (136), Expect = 3e-08
Identities = 64/261 (24%), Positives = 124/261 (47%), Gaps = 39/261 (14%)
Query: 153 ADRKILDDTEDTVVSQRKKIQI--NQEEERLKNERT--VFVGNLPVTCNKKKLKSFFKEY 208
AD + DT + V + K I+I +Q + L+ VF+ NL + + K L F +
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 209 GQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNINAYVVFKEESAATQAL-KRNGAQI 267
G I S + + + SK A +V F+ + AA +A+ K NG +
Sbjct: 123 GNILSCK----VVCDENGSKGYA---------------FVHFETQEAADKAIEKMNGMLL 163
Query: 268 ADG------FRIRVDLASETSSRDKR--SVFVGNLPYKVEESAIEKHFLDCGSIMAVRIV 319
D F+ R + +E ++ K +V++ N +V++ ++++ F G ++V+++
Sbjct: 164 NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVM 223
Query: 320 RDKMTGIGKGFGYVLFENTDSVHLAL-KLNNSELMGRKLRVMRSVNK----EKFKQQNSN 374
RD G KGFG+V +E + + A+ ++N E+ G+ + V R+ K + K++
Sbjct: 224 RDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQ 282
Query: 375 PRLKNVSKPKQGLNFTSKTAE 395
+ + +S+ QG+N K +
Sbjct: 283 LKQERISR-YQGVNLYIKNLD 302
Score = 48.1 bits (113), Expect = 1e-05
Identities = 54/253 (21%), Positives = 104/253 (41%), Gaps = 21/253 (8%)
Query: 137 QKQGQKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQEEE---RLKNERTVFVGNLP 193
Q+ K G+ + DRK+ R K + +E E + K V++ N
Sbjct: 148 QEAADKAIEKMNGMLLNDRKVFVG--------RFKSRKEREAELGAKAKEFTNVYIKNFG 199
Query: 194 VTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNINAYVVFKEE 253
+ + LK F ++G+ SV+ ++ SK + + H D + KE
Sbjct: 200 EEVDDESLKELFSQFGKTLSVK---VMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 254 SAATQALKRNGAQIADGFRIRVDLASETSSRDKR----SVFVGNLPYKVEESAIEKHFLD 309
S + R ++ ++ R R ++++ NL +++ + K F
Sbjct: 257 SGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSP 316
Query: 310 CGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLNNSELMGRK-LRVMRSVNKEKF 368
GSI + +++ + G KGFG+V F + + A+ N ++G K L V + KE+
Sbjct: 317 FGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Query: 369 KQQNSNPRLKNVS 381
K +N ++ V+
Sbjct: 375 KAHLTNQYMQRVA 387
Score = 47.8 bits (112), Expect = 2e-05
Identities = 29/103 (28%), Positives = 53/103 (51%), Gaps = 2/103 (1%)
Query: 282 SSRDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSV 341
SS S++VG+L V E+ + + F G ++++R+ RD +T G+ YV F+
Sbjct: 6 SSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 342 HLALKLNNSELM-GRKLRVMRSVNKEKFKQQN-SNPRLKNVSK 382
AL N +++ G+ +R+M S ++ N +KN+ K
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDK 108
Score = 44.7 bits (104), Expect = 2e-04
Identities = 35/126 (27%), Positives = 64/126 (50%), Gaps = 6/126 (4%)
Query: 246 AYVVFKEESAATQALKRNGAQIADGFRIRVDLASETSSRDKR---SVFVGNLPYKVEESA 302
AYV F++ + A +AL + G IR+ + S K +VF+ NL ++ A
Sbjct: 55 AYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKA 114
Query: 303 IEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLAL-KLNNSELMGRKLRVMR 361
+ F G+I++ ++V D+ KG+ +V FE ++ A+ K+N L RK+ V R
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGR 172
Query: 362 SVNKEK 367
++++
Sbjct: 173 FKSRKE 178
>gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo
sapiens]
Length = 644
Score = 57.0 bits (136), Expect = 3e-08
Identities = 64/261 (24%), Positives = 124/261 (47%), Gaps = 39/261 (14%)
Query: 153 ADRKILDDTEDTVVSQRKKIQI--NQEEERLKNERT--VFVGNLPVTCNKKKLKSFFKEY 208
AD + DT + V + K I+I +Q + L+ VF+ NL + + K L F +
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 209 GQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNINAYVVFKEESAATQAL-KRNGAQI 267
G I S + + + SK A +V F+ + AA +A+ K NG +
Sbjct: 123 GNILSCK----VVCDENGSKGYA---------------FVHFETQEAADKAIEKMNGMLL 163
Query: 268 ADG------FRIRVDLASETSSRDKR--SVFVGNLPYKVEESAIEKHFLDCGSIMAVRIV 319
D F+ R + +E ++ K +V++ N +V++ ++++ F G ++V+++
Sbjct: 164 NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVM 223
Query: 320 RDKMTGIGKGFGYVLFENTDSVHLAL-KLNNSELMGRKLRVMRSVNK----EKFKQQNSN 374
RD G KGFG+V +E + + A+ ++N E+ G+ + V R+ K + K++
Sbjct: 224 RDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQ 282
Query: 375 PRLKNVSKPKQGLNFTSKTAE 395
+ + +S+ QG+N K +
Sbjct: 283 LKQERISR-YQGVNLYIKNLD 302
Score = 48.1 bits (113), Expect = 1e-05
Identities = 54/253 (21%), Positives = 104/253 (41%), Gaps = 21/253 (8%)
Query: 137 QKQGQKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQEEE---RLKNERTVFVGNLP 193
Q+ K G+ + DRK+ R K + +E E + K V++ N
Sbjct: 148 QEAADKAIEKMNGMLLNDRKVFVG--------RFKSRKEREAELGAKAKEFTNVYIKNFG 199
Query: 194 VTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNINAYVVFKEE 253
+ + LK F ++G+ SV+ ++ SK + + H D + KE
Sbjct: 200 EEVDDESLKELFSQFGKTLSVK---VMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 254 SAATQALKRNGAQIADGFRIRVDLASETSSRDKR----SVFVGNLPYKVEESAIEKHFLD 309
S + R ++ ++ R R ++++ NL +++ + K F
Sbjct: 257 SGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSP 316
Query: 310 CGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLNNSELMGRK-LRVMRSVNKEKF 368
GSI + +++ + G KGFG+V F + + A+ N ++G K L V + KE+
Sbjct: 317 FGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Query: 369 KQQNSNPRLKNVS 381
K +N ++ V+
Sbjct: 375 KAHLTNQYMQRVA 387
Score = 47.8 bits (112), Expect = 2e-05
Identities = 29/103 (28%), Positives = 53/103 (51%), Gaps = 2/103 (1%)
Query: 282 SSRDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSV 341
SS S++VG+L V E+ + + F G ++++R+ RD +T G+ YV F+
Sbjct: 6 SSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 342 HLALKLNNSELM-GRKLRVMRSVNKEKFKQQN-SNPRLKNVSK 382
AL N +++ G+ +R+M S ++ N +KN+ K
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDK 108
Score = 44.7 bits (104), Expect = 2e-04
Identities = 35/126 (27%), Positives = 64/126 (50%), Gaps = 6/126 (4%)
Query: 246 AYVVFKEESAATQALKRNGAQIADGFRIRVDLASETSSRDKR---SVFVGNLPYKVEESA 302
AYV F++ + A +AL + G IR+ + S K +VF+ NL ++ A
Sbjct: 55 AYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKA 114
Query: 303 IEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLAL-KLNNSELMGRKLRVMR 361
+ F G+I++ ++V D+ KG+ +V FE ++ A+ K+N L RK+ V R
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGR 172
Query: 362 SVNKEK 367
++++
Sbjct: 173 FKSRKE 178
>gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Homo
sapiens]
Length = 660
Score = 57.0 bits (136), Expect = 3e-08
Identities = 64/261 (24%), Positives = 124/261 (47%), Gaps = 39/261 (14%)
Query: 153 ADRKILDDTEDTVVSQRKKIQI--NQEEERLKNERT--VFVGNLPVTCNKKKLKSFFKEY 208
AD + DT + V + K I+I +Q + L+ VF+ NL + + K L F +
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 209 GQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNINAYVVFKEESAATQAL-KRNGAQI 267
G I S + + + SK A +V F+ + AA +A+ K NG +
Sbjct: 123 GNILSCK----VVCDENGSKGYA---------------FVHFETQEAADKAIEKMNGMLL 163
Query: 268 ADG------FRIRVDLASETSSRDKR--SVFVGNLPYKVEESAIEKHFLDCGSIMAVRIV 319
D F+ R + +E ++ K +V++ N +V++ ++++ F G ++V+++
Sbjct: 164 NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVM 223
Query: 320 RDKMTGIGKGFGYVLFENTDSVHLAL-KLNNSELMGRKLRVMRSVNK----EKFKQQNSN 374
RD G KGFG+V +E + + A+ ++N E+ G+ + V R+ K + K++
Sbjct: 224 RDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQ 282
Query: 375 PRLKNVSKPKQGLNFTSKTAE 395
+ + +S+ QG+N K +
Sbjct: 283 LKQERISR-YQGVNLYIKNLD 302
Score = 48.1 bits (113), Expect = 1e-05
Identities = 54/253 (21%), Positives = 104/253 (41%), Gaps = 21/253 (8%)
Query: 137 QKQGQKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQEEE---RLKNERTVFVGNLP 193
Q+ K G+ + DRK+ R K + +E E + K V++ N
Sbjct: 148 QEAADKAIEKMNGMLLNDRKVFVG--------RFKSRKEREAELGAKAKEFTNVYIKNFG 199
Query: 194 VTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNINAYVVFKEE 253
+ + LK F ++G+ SV+ ++ SK + + H D + KE
Sbjct: 200 EEVDDESLKELFSQFGKTLSVK---VMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 254 SAATQALKRNGAQIADGFRIRVDLASETSSRDKR----SVFVGNLPYKVEESAIEKHFLD 309
S + R ++ ++ R R ++++ NL +++ + K F
Sbjct: 257 SGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSP 316
Query: 310 CGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLNNSELMGRK-LRVMRSVNKEKF 368
GSI + +++ + G KGFG+V F + + A+ N ++G K L V + KE+
Sbjct: 317 FGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Query: 369 KQQNSNPRLKNVS 381
K +N ++ V+
Sbjct: 375 KAHLTNQYMQRVA 387
Score = 47.8 bits (112), Expect = 2e-05
Identities = 29/103 (28%), Positives = 53/103 (51%), Gaps = 2/103 (1%)
Query: 282 SSRDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSV 341
SS S++VG+L V E+ + + F G ++++R+ RD +T G+ YV F+
Sbjct: 6 SSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 342 HLALKLNNSELM-GRKLRVMRSVNKEKFKQQN-SNPRLKNVSK 382
AL N +++ G+ +R+M S ++ N +KN+ K
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDK 108
Score = 44.7 bits (104), Expect = 2e-04
Identities = 35/126 (27%), Positives = 64/126 (50%), Gaps = 6/126 (4%)
Query: 246 AYVVFKEESAATQALKRNGAQIADGFRIRVDLASETSSRDKR---SVFVGNLPYKVEESA 302
AYV F++ + A +AL + G IR+ + S K +VF+ NL ++ A
Sbjct: 55 AYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKA 114
Query: 303 IEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLAL-KLNNSELMGRKLRVMR 361
+ F G+I++ ++V D+ KG+ +V FE ++ A+ K+N L RK+ V R
Sbjct: 115 LYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGR 172
Query: 362 SVNKEK 367
++++
Sbjct: 173 FKSRKE 178
>gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo
sapiens]
Length = 305
Score = 55.8 bits (133), Expect = 7e-08
Identities = 41/180 (22%), Positives = 81/180 (45%), Gaps = 11/180 (6%)
Query: 187 VFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNINA 246
+F+G L V ++ L+ F+ +G + + +K+ + + + +A
Sbjct: 9 LFIGGLNVQTSESGLRGHFEAFGTLTDC-----VVVVNPQTKRSRCFGFVTYSNVEEADA 63
Query: 247 YVVFKEESAATQALKRNGAQIADGFRIRVDLASETSSRDKRSVFVGNLPYKVEESAIEKH 306
+ +A+ A+ N ++ R D A + + +FVG L V E + +H
Sbjct: 64 AM-----AASPHAVDGNTVELKRAVS-REDSARPGAHAKVKKLFVGGLKGDVAEGDLIEH 117
Query: 307 FLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLNNSELMGRKLRVMRSVNKE 366
F G++ I+ DK +G +GFG+V F+N D+ A + + G ++ V ++V KE
Sbjct: 118 FSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKE 177
Score = 44.3 bits (103), Expect = 2e-04
Identities = 30/135 (22%), Positives = 61/135 (45%), Gaps = 8/135 (5%)
Query: 289 VFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLN 348
+F+G L + ES + HF G++ +V + T + FG+V + N + A+ +
Sbjct: 9 LFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAAS 68
Query: 349 NSELMGRKLRVMRSVNKEKFKQQNSNPRLKNVSKPKQGLNFTSKTAEG----HPKSLFIG 404
+ G + + R+V++E + ++ ++K + AEG H
Sbjct: 69 PHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVG----GLKGDVAEGDLIEHFSQFGTV 124
Query: 405 EKAVLLKTKKKGQKK 419
EKA ++ K+ G+K+
Sbjct: 125 EKAEIIADKQSGKKR 139
>gi|51243065 zinc finger CCHC-type and RNA binding motif 1 [Homo
sapiens]
Length = 217
Score = 55.1 bits (131), Expect = 1e-07
Identities = 38/146 (26%), Positives = 76/146 (52%), Gaps = 11/146 (7%)
Query: 286 KRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLAL 345
K +V+V NLP+ + + + + F G ++ V I++DK T KG ++LF + DS
Sbjct: 9 KSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCT 68
Query: 346 K-LNNSELMGRKLRVMRSVNK----EKFKQQNSNPRLKNVSKPKQGLNFTSKTAEGHPKS 400
+ +NN +L GR ++ +++ E +++N + K + G + PK+
Sbjct: 69 RAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESG-----HLSYACPKN 123
Query: 401 LFIGEKAVLLKTKKKGQKKSGRPKKQ 426
+ +GE+ K +KK +KK+ P+++
Sbjct: 124 M-LGEREPPKKKEKKKKKKAPEPEEE 148
>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
Length = 378
Score = 54.7 bits (130), Expect = 2e-07
Identities = 43/208 (20%), Positives = 86/208 (41%), Gaps = 37/208 (17%)
Query: 187 VFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNINA 246
+FVG L + ++ L+S+F +YG++ I + +Q
Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVD-----------------CVIMKDKTTNQSRGFG 54
Query: 247 YVVFKEESAATQALKRNGAQIADGFRIRVDLASETSSRDKRS------------------ 288
+V FK+ + L + DG I + + +R+
Sbjct: 55 FVKFKDPNCVGTVLASRPHTL-DGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSN 113
Query: 289 -VFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKL 347
+FVG +P+ E+ + ++F G + V ++ D +GFG++ FE+ SV A+ +
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 173
Query: 348 NNSELMGRKLRVMRSVNKEKFKQQNSNP 375
+ ++MG+K+ V R+ ++ Q P
Sbjct: 174 HFHDIMGKKVEVKRAEPRDSKSQAPGQP 201
Score = 42.7 bits (99), Expect = 6e-04
Identities = 26/116 (22%), Positives = 52/116 (44%), Gaps = 9/116 (7%)
Query: 289 VFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLN 348
+FVG L + + + +F G ++ I++DK T +GFG+V F++ + V L
Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 71
Query: 349 NSELMGRKLRVMRSVNKEKFKQQNSNPRLKNVSKPKQGLNFTSKTAEGHPKSLFIG 404
L G R+++ + + P ++PK+G ++ +F+G
Sbjct: 72 PHTLDG------RNIDPKPCTPRGMQPER---TRPKEGWQKGPRSDNSKSNKIFVG 118
Score = 31.6 bits (70), Expect = 1.5
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 176 QEEERLKNERT--VFVGNLPVTCNKKKLKSFFKEYGQIESV 214
Q+ R N ++ +FVG +P C + +L+ +FK++G + V
Sbjct: 102 QKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEV 142
>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
Length = 407
Score = 54.7 bits (130), Expect = 2e-07
Identities = 43/208 (20%), Positives = 86/208 (41%), Gaps = 37/208 (17%)
Query: 187 VFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNINA 246
+FVG L + ++ L+S+F +YG++ I + +Q
Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVD-----------------CVIMKDKTTNQSRGFG 54
Query: 247 YVVFKEESAATQALKRNGAQIADGFRIRVDLASETSSRDKRS------------------ 288
+V FK+ + L + DG I + + +R+
Sbjct: 55 FVKFKDPNCVGTVLASRPHTL-DGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSN 113
Query: 289 -VFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKL 347
+FVG +P+ E+ + ++F G + V ++ D +GFG++ FE+ SV A+ +
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 173
Query: 348 NNSELMGRKLRVMRSVNKEKFKQQNSNP 375
+ ++MG+K+ V R+ ++ Q P
Sbjct: 174 HFHDIMGKKVEVKRAEPRDSKSQAPGQP 201
Score = 42.7 bits (99), Expect = 6e-04
Identities = 26/116 (22%), Positives = 52/116 (44%), Gaps = 9/116 (7%)
Query: 289 VFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLN 348
+FVG L + + + +F G ++ I++DK T +GFG+V F++ + V L
Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 71
Query: 349 NSELMGRKLRVMRSVNKEKFKQQNSNPRLKNVSKPKQGLNFTSKTAEGHPKSLFIG 404
L G R+++ + + P ++PK+G ++ +F+G
Sbjct: 72 PHTLDG------RNIDPKPCTPRGMQPER---TRPKEGWQKGPRSDNSKSNKIFVG 118
Score = 31.6 bits (70), Expect = 1.5
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 176 QEEERLKNERT--VFVGNLPVTCNKKKLKSFFKEYGQIESV 214
Q+ R N ++ +FVG +P C + +L+ +FK++G + V
Sbjct: 102 QKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEV 142
>gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform b
[Homo sapiens]
Length = 285
Score = 54.7 bits (130), Expect = 2e-07
Identities = 44/193 (22%), Positives = 82/193 (42%), Gaps = 21/193 (10%)
Query: 182 KNERT---VFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIH 238
KNE +FVG L +KK LK +F ++G++ IK +
Sbjct: 64 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVD-----------------CTIKMDPN 106
Query: 239 PDQKNINAYVVFKEESAATQALKRNGAQIADGFRIRVDLASETSSRDKRSVFVGNLPYKV 298
+ +++FK+ ++ + L + ++ DG I A + +FVG L +
Sbjct: 107 TGRSRGFGFILFKDAASVEKVLDQKEHRL-DGRVIDPKKAMAMKKDPVKKIFVGGLNPEA 165
Query: 299 EESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLNNSELMGRKLR 358
E I ++F + G I A+ + D +GF ++ F+ + V L+ + G K
Sbjct: 166 TEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCE 225
Query: 359 VMRSVNKEKFKQQ 371
+ + KE ++QQ
Sbjct: 226 IKVAQPKEVYQQQ 238
Score = 45.4 bits (106), Expect = 1e-04
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 7/114 (6%)
Query: 254 SAATQALKRNGAQIADGFRIRVDLASETSSRDKRSVFVGNLPYKVEESAIEKHFLDCGSI 313
+AA + +NGA+ G +I E D +FVG L + + ++ +F G +
Sbjct: 44 TAAPPSGNQNGAE---GDQINASKNEE----DAGKMFVGGLSWDTSKKDLKDYFTKFGEV 96
Query: 314 MAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLNNSELMGRKLRVMRSVNKEK 367
+ I D TG +GFG++LF++ SV L L GR + +++ +K
Sbjct: 97 VDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKK 150
>gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform a
[Homo sapiens]
Length = 332
Score = 54.7 bits (130), Expect = 2e-07
Identities = 44/193 (22%), Positives = 82/193 (42%), Gaps = 21/193 (10%)
Query: 182 KNERT---VFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIH 238
KNE +FVG L +KK LK +F ++G++ IK +
Sbjct: 64 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVD-----------------CTIKMDPN 106
Query: 239 PDQKNINAYVVFKEESAATQALKRNGAQIADGFRIRVDLASETSSRDKRSVFVGNLPYKV 298
+ +++FK+ ++ + L + ++ DG I A + +FVG L +
Sbjct: 107 TGRSRGFGFILFKDAASVEKVLDQKEHRL-DGRVIDPKKAMAMKKDPVKKIFVGGLNPEA 165
Query: 299 EESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLNNSELMGRKLR 358
E I ++F + G I A+ + D +GF ++ F+ + V L+ + G K
Sbjct: 166 TEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCE 225
Query: 359 VMRSVNKEKFKQQ 371
+ + KE ++QQ
Sbjct: 226 IKVAQPKEVYQQQ 238
Score = 45.4 bits (106), Expect = 1e-04
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 7/114 (6%)
Query: 254 SAATQALKRNGAQIADGFRIRVDLASETSSRDKRSVFVGNLPYKVEESAIEKHFLDCGSI 313
+AA + +NGA+ G +I E D +FVG L + + ++ +F G +
Sbjct: 44 TAAPPSGNQNGAE---GDQINASKNEE----DAGKMFVGGLSWDTSKKDLKDYFTKFGEV 96
Query: 314 MAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLNNSELMGRKLRVMRSVNKEK 367
+ I D TG +GFG++LF++ SV L L GR + +++ +K
Sbjct: 97 VDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKK 150
>gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b
[Homo sapiens]
Length = 336
Score = 54.3 bits (129), Expect = 2e-07
Identities = 49/210 (23%), Positives = 94/210 (44%), Gaps = 30/210 (14%)
Query: 167 SQRKKIQINQEEERLKNERTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTL 226
S+ KI ++ EE +E +F+G L KK LK +F ++G++ + L P G
Sbjct: 63 SEGAKIDASKNEE---DEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLK-LDPITG-- 116
Query: 227 SKKLAAIKRKIHPDQKNINAYVVFKEESAATQAL-----KRNGAQIADGFRIRVDLASET 281
+ +V+FKE + + + K NG ++ D R + A +T
Sbjct: 117 --------------RSRGFGFVLFKESESVDKVMDQKEHKLNG-KVIDPKRAK---AMKT 158
Query: 282 SSRDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSV 341
K+ +FVG L E I ++F G + ++ + D T +GF ++ F+ + V
Sbjct: 159 KEPVKK-IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPV 217
Query: 342 HLALKLNNSELMGRKLRVMRSVNKEKFKQQ 371
++ + K + +++KE+++QQ
Sbjct: 218 KKIMEKKYHNVGLSKCEIKVAMSKEQYQQQ 247
>gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d
[Homo sapiens]
Length = 287
Score = 54.3 bits (129), Expect = 2e-07
Identities = 49/210 (23%), Positives = 94/210 (44%), Gaps = 30/210 (14%)
Query: 167 SQRKKIQINQEEERLKNERTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTL 226
S+ KI ++ EE +E +F+G L KK LK +F ++G++ + L P G
Sbjct: 63 SEGAKIDASKNEE---DEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLK-LDPITG-- 116
Query: 227 SKKLAAIKRKIHPDQKNINAYVVFKEESAATQAL-----KRNGAQIADGFRIRVDLASET 281
+ +V+FKE + + + K NG ++ D R + A +T
Sbjct: 117 --------------RSRGFGFVLFKESESVDKVMDQKEHKLNG-KVIDPKRAK---AMKT 158
Query: 282 SSRDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSV 341
K+ +FVG L E I ++F G + ++ + D T +GF ++ F+ + V
Sbjct: 159 KEPVKK-IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPV 217
Query: 342 HLALKLNNSELMGRKLRVMRSVNKEKFKQQ 371
++ + K + +++KE+++QQ
Sbjct: 218 KKIMEKKYHNVGLSKCEIKVAMSKEQYQQQ 247
>gi|50053795 eukaryotic translation initiation factor 4B [Homo
sapiens]
Length = 611
Score = 54.3 bits (129), Expect = 2e-07
Identities = 38/109 (34%), Positives = 59/109 (54%), Gaps = 3/109 (2%)
Query: 288 SVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIG-KGFGYVLFENTDSVHLALK 346
+ F+GNLPY V E +I++ F +I AVR+ R+ KGFGY FE+ DS+ AL
Sbjct: 97 TAFLGNLPYDVTEESIKEFFRGL-NISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALS 155
Query: 347 LNNSELMGRKLRV-MRSVNKEKFKQQNSNPRLKNVSKPKQGLNFTSKTA 394
LN L R++RV + ++K + S R +N K ++ ++ A
Sbjct: 156 LNEESLGNRRIRVDVADQAQDKDRDDRSFGRDRNRDSDKTDTDWRARPA 204
Score = 35.0 bits (79), Expect = 0.13
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 18/101 (17%)
Query: 186 TVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNIN 245
T F+GNLP ++ +K FF+ I +VR +P E + +P++
Sbjct: 97 TAFLGNLPYDVTEESIKEFFRGL-NISAVR----LPREPS------------NPERLKGF 139
Query: 246 AYVVFKEESAATQALKRNGAQIADGFRIRVDLASETSSRDK 286
Y F++ + AL N + + RIRVD+A + +D+
Sbjct: 140 GYAEFEDLDSLLSALSLNEESLGNR-RIRVDVADQAQDKDR 179
>gi|116734698 RNA binding motif protein 23 isoform 3 [Homo sapiens]
Length = 405
Score = 54.3 bits (129), Expect = 2e-07
Identities = 61/302 (20%), Positives = 114/302 (37%), Gaps = 43/302 (14%)
Query: 83 KRNEEEESTSQIERPLSQEPAKKVKAKKKHTNAEKKLADRESALASADLEEEIHQKQGQK 142
K+ E+E+ ++++ T+ + + + D + +
Sbjct: 19 KKEEDEQQRKEVKKDYPSNTTSSTSNSGNETSGSSTIGETSNRSRDRDRYRRRNSRSRSP 78
Query: 143 RKNSQPGVKVADRKILDDT-------EDTVVSQRKKIQINQEEERLKNE----RTVFVGN 191
+ + + DR+ ++ ED V + + + + L E RTVF
Sbjct: 79 GRQCRHRSRSWDRRHGSESRSRDHRREDRVHYRSPPLATGEPVDNLSPEERDARTVFCMQ 138
Query: 192 LPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNINAYVVFK 251
L + L+ FF G++ VR S S++ I AYV F
Sbjct: 139 LAARIRPRDLEDFFSAVGKVRDVRIIS-----DRNSRRSKGI------------AYVEFC 181
Query: 252 EESAATQALKRNGAQIADGFRIRVDLASETSSR-------------DKRSVFVGNLPYKV 298
E + A+ G ++ G I V + +R ++VG+L + +
Sbjct: 182 EIQSVPLAIGLTGQRLL-GVPIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNI 240
Query: 299 EESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLAL-KLNNSELMGRKL 357
E + F G I + +++D TG KG+G++ F +++ AL +LN EL GR +
Sbjct: 241 TEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPM 300
Query: 358 RV 359
RV
Sbjct: 301 RV 302
Score = 45.1 bits (105), Expect = 1e-04
Identities = 27/79 (34%), Positives = 38/79 (48%)
Query: 284 RDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHL 343
RD R+VF L ++ +E F G + VRI+ D+ + KG YV F SV L
Sbjct: 129 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPL 188
Query: 344 ALKLNNSELMGRKLRVMRS 362
A+ L L+G + V S
Sbjct: 189 AIGLTGQRLLGVPIIVQAS 207
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.129 0.347
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,479,881
Number of Sequences: 37866
Number of extensions: 705580
Number of successful extensions: 5286
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 402
Number of HSP's that attempted gapping in prelim test: 3731
Number of HSP's gapped (non-prelim): 1598
length of query: 430
length of database: 18,247,518
effective HSP length: 105
effective length of query: 325
effective length of database: 14,271,588
effective search space: 4638266100
effective search space used: 4638266100
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.